mRNA_H-elongata_contig483.11978.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig483.11978.1
Unique NamemRNA_H-elongata_contig483.11978.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig483.11978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig483contigH-elongata_contig483:18939..19684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size746
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig483.11978.1prot_H-elongata_contig483.11978.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig483 19233..19640 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930795.9816043-UTR-H-elongata_contig483:18938..192321622930795.9816043-UTR-H-elongata_contig483:18938..19232Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig483 18939..19232 +
1691679573.9009151-UTR-H-elongata_contig483:18938..192321691679573.9009151-UTR-H-elongata_contig483:18938..19232Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig483 18939..19232 +
1622930796.0208094-UTR-H-elongata_contig483:19640..196841622930796.0208094-UTR-H-elongata_contig483:19640..19684Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig483 19641..19684 +
1691679573.9239037-UTR-H-elongata_contig483:19640..196841691679573.9239037-UTR-H-elongata_contig483:19640..19684Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig483 19641..19684 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930796.003432-CDS-H-elongata_contig483:19232..196401622930796.003432-CDS-H-elongata_contig483:19232..19640Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig483 19233..19640 +
1691679573.9098105-CDS-H-elongata_contig483:19232..196401691679573.9098105-CDS-H-elongata_contig483:19232..19640Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig483 19233..19640 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig483.11978.1

>prot_H-elongata_contig483.11978.1 ID=prot_H-elongata_contig483.11978.1|Name=mRNA_H-elongata_contig483.11978.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
MPSLHSASNPLWRSFCVSFLCLFGQISCRRAVPQHRSDKEKVYNLGGLPG
HIGARICMTFTHTTSIRPTIDTTASSQRKKRNTQFNFGFSTSMPCGNMLH
GLLLTLGKTAQSRGARRLRTWMPCPPPPGASQTQF*
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mRNA from alignment at H-elongata_contig483:18939..19684+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig483.11978.1 ID=mRNA_H-elongata_contig483.11978.1|Name=mRNA_H-elongata_contig483.11978.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=746bp|location=Sequence derived from alignment at H-elongata_contig483:18939..19684+ (Himanthalia elongata Himel1 dioecious)
CTCCGTGTACACCCCAGGGAAACGGCCAATATATTTGGAAGTAGACGGAC
ACCATGAGGCGAAAAAATAACAGATTGGTACGGGGGTCACCAATCTTTCC
ACGAAAACAAACACTGGGGCTACTATACCCCAGGTACTTACAAGTGGCTG
GAACTCCTCCTCGATCGGCGGAGGCGAGGAACCGGTCGCACTAGGTCCCT
CGACCACATTGTGGGGTCCCTCTTCCGCTTCAGGCAGTCGTTGAACATAC
TTTCTAGAACAACGCCCGTCTTACCTTGGAACAAGGGCCCGTAAATGCCC
TCCTTACACTCCGCATCGAACCCCTTGTGGCGTTCCTTCTGTGTGTCGTT
TTTGTGCCTTTTCGGCCAAATCTCGTGTCGCAGGGCTGTACCACAACATC
GCAGCGACAAGGAAAAGGTCTATAATCTGGGGGGCTTGCCGGGACATATT
GGAGCTCGCATATGCATGACCTTTACCCATACAACTAGCATTCGGCCCAC
AATCGACACGACTGCCTCATCTCAGAGGAAAAAGCGAAACACGCAATTCA
ACTTTGGGTTTAGTACAAGTATGCCATGTGGAAATATGCTTCATGGTTTA
CTTCTTACTTTAGGGAAAACAGCTCAAAGCAGGGGGGCTCGTAGATTACG
TACGTGGATGCCATGTCCCCCCCCCCCCGGAGCATCGCAAACCCAGTTTT
GACGTTGTTTTGCGGAAAGACTTAACTACTTGAGTTTAGTATAGGT
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Coding sequence (CDS) from alignment at H-elongata_contig483:18939..19684+

>mRNA_H-elongata_contig483.11978.1 ID=mRNA_H-elongata_contig483.11978.1|Name=mRNA_H-elongata_contig483.11978.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig483:18939..19684+ (Himanthalia elongata Himel1 dioecious)
ATGCCCTCCTTACACTCCGCATCGAACCCCTTGTGGCGTTCCTTCTGTGT
GTCGTTTTTGTGCCTTTTCGGCCAAATCTCGTGTCGCAGGGCTGTACCAC
AACATCGCAGCGACAAGGAAAAGGTCTATAATCTGGGGGGCTTGCCGGGA
CATATTGGAGCTCGCATATGCATGACCTTTACCCATACAACTAGCATTCG
GCCCACAATCGACACGACTGCCTCATCTCAGAGGAAAAAGCGAAACACGC
AATTCAACTTTGGGTTTAGTACAAGTATGCCATGTGGAAATATGCTTCAT
GGTTTACTTCTTACTTTAGGGAAAACAGCTCAAAGCAGGGGGGCTCGTAG
ATTACGTACGTGGATGCCATGTCCCCCCCCCCCCGGAGCATCGCAAACCC
AGTTTTGAATGCCCTCCTTACACTCCGCATCGAACCCCTTGTGGCGTTCC
TTCTGTGTGTCGTTTTTGTGCCTTTTCGGCCAAATCTCGTGTCGCAGGGC
TGTACCACAACATCGCAGCGACAAGGAAAAGGTCTATAATCTGGGGGGCT
TGCCGGGACATATTGGAGCTCGCATATGCATGACCTTTACCCATACAACT
AGCATTCGGCCCACAATCGACACGACTGCCTCATCTCAGAGGAAAAAGCG
AAACACGCAATTCAACTTTGGGTTTAGTACAAGTATGCCATGTGGAAATA
TGCTTCATGGTTTACTTCTTACTTTAGGGAAAACAGCTCAAAGCAGGGGG
GCTCGTAGATTACGTACGTGGATGCCATGTCCCCCCCCCCCCGGAGCATC
GCAAACCCAGTTTTGA
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