mRNA_H-elongata_contig483.11977.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig483.11977.1
Unique NamemRNA_H-elongata_contig483.11977.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig483.11977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig483contigH-elongata_contig483:16913..18137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size882
Cds size633
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig483.11977.1prot_H-elongata_contig483.11977.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig483 16948..17923 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930795.7949169-UTR-H-elongata_contig483:16912..169471622930795.7949169-UTR-H-elongata_contig483:16912..16947Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig483 16913..16947 -
1691679573.8519495-UTR-H-elongata_contig483:16912..169471691679573.8519495-UTR-H-elongata_contig483:16912..16947Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig483 16913..16947 -
1622930795.8571243-UTR-H-elongata_contig483:17923..181371622930795.8571243-UTR-H-elongata_contig483:17923..18137Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig483 17924..18137 -
1691679573.8852577-UTR-H-elongata_contig483:17923..181371691679573.8852577-UTR-H-elongata_contig483:17923..18137Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig483 17924..18137 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930795.816098-CDS-H-elongata_contig483:16947..173831622930795.816098-CDS-H-elongata_contig483:16947..17383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig483 16948..17383 -
1691679573.8618336-CDS-H-elongata_contig483:16947..173831691679573.8618336-CDS-H-elongata_contig483:16947..17383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig483 16948..17383 -
1622930795.8373818-CDS-H-elongata_contig483:17726..179231622930795.8373818-CDS-H-elongata_contig483:17726..17923Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig483 17727..17923 -
1691679573.872702-CDS-H-elongata_contig483:17726..179231691679573.872702-CDS-H-elongata_contig483:17726..17923Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig483 17727..17923 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig483.11977.1

>prot_H-elongata_contig483.11977.1 ID=prot_H-elongata_contig483.11977.1|Name=mRNA_H-elongata_contig483.11977.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=211bp
MLLLFGEDFNPPGDDGDGDGDHEDSEGDDKGGNNDRDSGKGKGRVPKSSR
KTRRQKHRASEDTITSQISSLAHSAVKDQKASRADKAKYHREKIDPLGRQ
WVRGQQALKEQRAEDERIRKEERKEAACVRKEEIDENARAVKEKRDENAR
VGKKKRDENARVRKEEKKVRDHEFRIMLLEMRHPVQGSSGLSLRGRPSPS
FLFFVRRTPL*
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mRNA from alignment at H-elongata_contig483:16913..18137-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig483.11977.1 ID=mRNA_H-elongata_contig483.11977.1|Name=mRNA_H-elongata_contig483.11977.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1225bp|location=Sequence derived from alignment at H-elongata_contig483:16913..18137- (Himanthalia elongata Himel1 dioecious)
GGGAGTCAAGTTTTAATCGGTCACTCGAGATGGTCAAGGAGACTGGTAGC
AGGGAGGACAACGGGAAGGATACTGTTATCTGGAGCCAGTTAGAGTTTGT
GGGGATACCGGAGGCGTCTCTCCTAACCCTCTGCACCCACTACGACGCTG
ACCTGGACCATCTAAGGTTCGTGACTACCGCCTCGGCCTTCAAACTGTAC
ACTGAAGGGTGGCCATGCTCCTGCTGTTCGGTGAAGATTTCAATCCTCCG
GGCGACGACGGGGACGGTGATGGCGACCATGAGGACAGCGAGGGCGACGA
TAAAGGCGGAAACAACGACAGGGACAGTGGCAAAGGTAAGGGGCGTGTGC
CCAAGTCCAGCAGGAAGACCCGTAGGCAGAAGCACAGGGCCAGCGAAGAT
ACCATCACCAGGTGAGCATTTTCGGGAGTGGATAGACCAAAATGGATGTG
GAAGATTGGGGGAGGTGGTCAAGTGGTGCAGGAGTCGGAGACTGTACAGA
CGCAGGGGTAATAGCAGACGAGGCAGCATGCCCACGGGGGGGGGGAGCAG
GGCCGGGGGGGGGAAGGTTGCATTCATTTGCAAACATTTAAAGAACGGCG
CATTTTTTACAATACGTTGGTGAGTCTCACAAAATTATTTCTTGGCAGAA
TTCGAGGAAAATTATGGGCTTCCGGCTGACTCTTCGCTGCCCCCCCCCGC
ACTTCCCCACCCTGTGGTCTTTGTGTGGTATTTTAATATTTTATGCCTCT
ACAGCCAAATCAGCTCTCTGGCACACTCGGCGGTCAAGGATCAGAAAGCC
AGTCGGGCCGACAAGGCCAAATACCACCGGGAGAAGATCGATCCACTTGG
GCGACAATGGGTTAGGGGGCAGCAGGCGCTGAAGGAACAGCGGGCGGAGG
ATGAACGTATAAGGAAGGAAGAAAGGAAGGAAGCCGCGTGCGTGAGGAAG
GAGGAAATAGATGAGAATGCACGCGCGGTGAAGGAGAAAAGAGATGAGAA
TGCACGCGTGGGGAAAAAGAAAAGAGACGAGAATGCACGCGTGAGAAAGG
AGGAAAAGAAAGTGCGCGATCACGAGTTTCGGATAATGCTCCTGGAAATG
AGGCACCCGGTACAAGGGTCAAGTGGACTGAGCCTGAGGGGTAGGCCGTC
GCCCTCTTTCTTGTTTTTTGTCAGACGCACCCCTCTTTGACATTGGTTGT
CTCCCCCCCTTCCTCTCCCTTATAT
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Coding sequence (CDS) from alignment at H-elongata_contig483:16913..18137-

>mRNA_H-elongata_contig483.11977.1 ID=mRNA_H-elongata_contig483.11977.1|Name=mRNA_H-elongata_contig483.11977.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1266bp|location=Sequence derived from alignment at H-elongata_contig483:16913..18137- (Himanthalia elongata Himel1 dioecious)
ATGCTCCTGCTGTTCGGTGAAGATTTCAATCCTCCGGGCGACGACGGGGA
CGGTGATGGCGACCATGAGGACAGCGAGGGCGACGATAAAGGCGGAAACA
ACGACAGGGACAGTGGCAAAGGTAAGGGGCGTGTGCCCAAGTCCAGCAGG
AAGACCCGTAGGCAGAAGCACAGGGCCAGCGAAGATACCATCACCAGATG
CTCCTGCTGTTCGGTGAAGATTTCAATCCTCCGGGCGACGACGGGGACGG
TGATGGCGACCATGAGGACAGCGAGGGCGACGATAAAGGCGGAAACAACG
ACAGGGACAGTGGCAAAGGTAAGGGGCGTGTGCCCAAGTCCAGCAGGAAG
ACCCGTAGGCAGAAGCACAGGGCCAGCGAAGATACCATCACCAGCCAAAT
CAGCTCTCTGGCACACTCGGCGGTCAAGGATCAGAAAGCCAGTCGGGCCG
ACAAGGCCAAATACCACCGGGAGAAGATCGATCCACTTGGGCGACAATGG
GTTAGGGGGCAGCAGGCGCTGAAGGAACAGCGGGCGGAGGATGAACGTAT
AAGGAAGGAAGAAAGGAAGGAAGCCGCGTGCGTGAGGAAGGAGGAAATAG
ATGAGAATGCACGCGCGGTGAAGGAGAAAAGAGATGAGAATGCACGCGTG
GGGAAAAAGAAAAGAGACGAGAATGCACGCGTGAGAAAGGAGGAAAAGAA
AGTGCGCGATCACGAGTTTCGGATAATGCTCCTGGAAATGAGGCACCCGG
TACAAGGGTCAAGTGGACTGAGCCTGAGGGGTAGGCCGTCGCCCTCTTTC
TTGTTTTTTGTCAGACGCACCCCTCTTTGACCAAATCAGCTCTCTGGCAC
ACTCGGCGGTCAAGGATCAGAAAGCCAGTCGGGCCGACAAGGCCAAATAC
CACCGGGAGAAGATCGATCCACTTGGGCGACAATGGGTTAGGGGGCAGCA
GGCGCTGAAGGAACAGCGGGCGGAGGATGAACGTATAAGGAAGGAAGAAA
GGAAGGAAGCCGCGTGCGTGAGGAAGGAGGAAATAGATGAGAATGCACGC
GCGGTGAAGGAGAAAAGAGATGAGAATGCACGCGTGGGGAAAAAGAAAAG
AGACGAGAATGCACGCGTGAGAAAGGAGGAAAAGAAAGTGCGCGATCACG
AGTTTCGGATAATGCTCCTGGAAATGAGGCACCCGGTACAAGGGTCAAGT
GGACTGAGCCTGAGGGGTAGGCCGTCGCCCTCTTTCTTGTTTTTTGTCAG
ACGCACCCCTCTTTGA
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