mRNA_H-elongata_contig48140.11955.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig48140.11955.1 vs. uniprot
Match: A0A6H5L446_9PHAE (UDENN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L446_9PHAE) HSP 1 Score: 181 bits (458), Expect = 3.370e-50 Identity = 99/133 (74.44%), Postives = 111/133 (83.46%), Query Frame = 1
Query: 1 QVSIHCPAFLRAPLEVTSAPLEAWATAVLFASVPEATILRAVDVLLLEKTLVVCGRDIGMVSITATALLSLLDPFKWEGVFVPVVPLKMMDVLDSPVPALVGVQAPFEAPLVNPLGYALDSVVVLDLDARPAS 399
+VS++CPAFLRAPLE+T LE W+TAVLF V E TILRA+D+LLLEKTLVVCGRDIG+VS+ ATALLSLLDPFKWEGVFVPVVPL +MDVLDSPVPALVGVQAP ++PL A D V VLDLDA AS
Sbjct: 653 KVSLYCPAFLRAPLELTPPSLELWSTAVLFGCVSERTILRALDLLLLEKTLVVCGRDIGIVSMAATALLSLLDPFKWEGVFVPVVPLALMDVLDSPVPALVGVQAP-----LDPLSSAADGVAVLDLDANNAS 780
BLAST of mRNA_H-elongata_contig48140.11955.1 vs. uniprot
Match: A0A4D9CNF6_9STRA (UDENN domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CNF6_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 8.160e-21 Identity = 51/106 (48.11%), Postives = 73/106 (68.87%), Query Frame = 1
Query: 40 LEVTSAPLEAWATAVLFASVPEATILRAVDVLLLEKTLVVCGRDIGMVSITATALLSLLDPFKWEGVFVPVVPLKMMDVLDSPVPALVGVQAPFEAPLVNPLGYAL 357
L++ PL+ W AVLF+ V I++ V++LLLE++LVV G D G+VS +TA +SLL PFKW+GVF+P++P + D+L SPVP ++GVQ PF+ P AL
Sbjct: 500 LDLPLVPLQDWTVAVLFSHVSVDVIIKCVNLLLLEQSLVVIGEDQGLVSAISTAFVSLLQPFKWDGVFIPLLPTALSDILQSPVPFVLGVQPPFDPTRSTPHAAAL 605
BLAST of mRNA_H-elongata_contig48140.11955.1 vs. uniprot
Match: A0A482S8K5_9ARCH (DENN domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S8K5_9ARCH) HSP 1 Score: 75.1 bits (183), Expect = 2.990e-13 Identity = 42/106 (39.62%), Postives = 66/106 (62.26%), Query Frame = 1
Query: 4 VSIHCPAFL-RAPLEVTSAPLEAWATAVLFASVPEATILRAVDVLLLEKTLVVCGRDIGMVSITATALLSLLDPFKWEGVFVPVVPLKMMDVLDSPVPALVGVQAP 318
V++ P+++ + T A ++ WA AVL +P I+ +LLLEK+L++ G D +VSI T L LL P+KW G+FVP++P +VL++PVP +VG+ P
Sbjct: 47 VNLSFPSYMDNLVVSKTQATIDMWAVAVLTYFIPTDVIVHIHLMLLLEKSLIILGSDAALVSILCTGFLHLLAPYKWTGIFVPLLPPLAQEVLEAPVPFIVGMYTP 152
BLAST of mRNA_H-elongata_contig48140.11955.1 vs. uniprot
Match: A0A7S3GU22_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GU22_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 1.100e-11 Identity = 36/102 (35.29%), Postives = 63/102 (61.76%), Query Frame = 1
Query: 10 IHCPAFL---RAPLEVTSAPLEAWATAVLFASVPEATILRAVDVLLLEKTLVVCGRDIGMVSITATALLSLLDPFKWEGVFVPVVPLKMMDVLDSPVPALVG 306
I CP ++ + L+ E W AVLF + I + +++LL+EK+L++ G++ G+V+ A+++L+ PF WEG+FVP+VP ++ +PVP +VG
Sbjct: 14 IRCPGYIEDFKVDLKALLTTKE-WTCAVLFTHLSSQIIFKIINLLLMEKSLIIHGKNAGIVTTITMAVINLISPFLWEGIFVPLVPDNARELFGAPVPLIVG 114
BLAST of mRNA_H-elongata_contig48140.11955.1 vs. uniprot
Match: A0A7S3GQI8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GQI8_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 1.630e-11 Identity = 36/85 (42.35%), Postives = 55/85 (64.71%), Query Frame = 1
Query: 61 LEAWATAVLFASVPEATILRAVDVLLLEKTLVVCGRDIGMVSITATALLSLLDPFKWEGVFVPVVPLKMMDVLDSPVPALVGVQA 315
L+ W A+L A +P I++ + LL E++L+V G D GMV+ +A LL PF WEG+ VP++P+ + LD+PVP ++GV A
Sbjct: 707 LKEWTVAILIALLPSELIVKILSQLLQEQSLLVYGSDAGMVTAVVSAFTLLLQPFSWEGIHVPLLPMAAYEALDAPVPFVIGVVA 791
BLAST of mRNA_H-elongata_contig48140.11955.1 vs. uniprot
Match: A0A6J1JNC5_CUCMA (uncharacterized protein LOC111488447 isoform X1 n=9 Tax=Cucurbita TaxID=3660 RepID=A0A6J1JNC5_CUCMA) HSP 1 Score: 69.3 bits (168), Expect = 4.040e-11 Identity = 35/82 (42.68%), Postives = 58/82 (70.73%), Query Frame = 1
Query: 61 LEAWATAVLFASVPEATILRAVDVLLLEKTLVVCGRDIGMVSITATALLSLLDPFKWEGVFVPVVPLKMMDVLDSPVPALVG 306
L W TA L ++ T+L+ V V+LLEK ++V ++G++S T +L+ ++ PF+W+ +F+PV+P KM D+LD+PVP +VG
Sbjct: 563 LSIWTTATLCRALSLETVLQLVAVILLEKQVIVVCPNLGLLSATVLSLVPMICPFQWQSLFLPVLPGKMFDLLDAPVPFIVG 644
BLAST of mRNA_H-elongata_contig48140.11955.1 vs. uniprot
Match: A0A484NLS7_9ASTE (UDENN domain-containing protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484NLS7_9ASTE) HSP 1 Score: 68.2 bits (165), Expect = 1.020e-10 Identity = 34/87 (39.08%), Postives = 60/87 (68.97%), Query Frame = 1
Query: 52 SAPLEAWATAVLFASVPEATILRAVDVLLLEKTLVVCGRDIGMVSITATALLSLLDPFKWEGVFVPVVPLKMMDVLDSPVPALVGVQ 312
+A L W TA ++ TIL + +LLEK +V+ ++G++S +L+ ++ PF+W+ +F+P++PLKM+D+LD+PVP +VG+Q
Sbjct: 590 AAALSVWTTAATCRALSLETILTMITGVLLEKQVVLICPNLGVLSALVLSLIPIIRPFQWQSLFLPILPLKMLDLLDAPVPFIVGLQ 676
BLAST of mRNA_H-elongata_contig48140.11955.1 vs. uniprot
Match: UPI000901FF5B (uncharacterized protein LOC109173826 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI000901FF5B) HSP 1 Score: 67.4 bits (163), Expect = 1.900e-10 Identity = 34/84 (40.48%), Postives = 58/84 (69.05%), Query Frame = 1
Query: 61 LEAWATAVLFASVPEATILRAVDVLLLEKTLVVCGRDIGMVSITATALLSLLDPFKWEGVFVPVVPLKMMDVLDSPVPALVGVQ 312
L W TA + ++ TIL V +LLEK +VV ++G++S +L+ ++ PF+W+ +F+P++P KM+D+LD+PVP +VG+Q
Sbjct: 578 LSVWTTATICRALSLETILALVTGVLLEKQVVVICPNLGILSALVLSLIPIIRPFQWQSLFLPILPRKMLDLLDAPVPFIVGLQ 661
BLAST of mRNA_H-elongata_contig48140.11955.1 vs. uniprot
Match: UPI0008FEBA2E (uncharacterized protein LOC101261930 isoform X2 n=1 Tax=Solanum lycopersicum TaxID=4081 RepID=UPI0008FEBA2E) HSP 1 Score: 67.4 bits (163), Expect = 1.900e-10 Identity = 34/84 (40.48%), Postives = 57/84 (67.86%), Query Frame = 1
Query: 61 LEAWATAVLFASVPEATILRAVDVLLLEKTLVVCGRDIGMVSITATALLSLLDPFKWEGVFVPVVPLKMMDVLDSPVPALVGVQ 312
L W TA + S+ TIL + +LLEK +V+ ++G++S +L+ ++ PF+W+ +F+P++P KMMD LD+PVP +VG+Q
Sbjct: 591 LSLWTTATICRSLSIETILALITGVLLEKQVVIVCPNLGVLSAVVLSLIPIIRPFQWQSLFLPILPGKMMDFLDAPVPFIVGLQ 674
BLAST of mRNA_H-elongata_contig48140.11955.1 vs. uniprot
Match: A0A7S1YZ68_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YZ68_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 2.660e-10 Identity = 50/132 (37.88%), Postives = 73/132 (55.30%), Query Frame = 1
Query: 1 QVSIHCPAFLRAPLEVTSAPLEAWATAVLFASVPEATILRAVDVLLLEKTLVVCGRDIGMVSITATALLSLLDPFKWEGVFVPVVPLKMMDVLDSPVPALVGVQAPF----EAPLVNPLGYALDSVVVLDLD 384
QVSI PA R PL ++ LFAS+ IL + LL E + +C + ++ AL SLL PF W+G+++P++P M+DVLD+PVP LVG+ + + +AP P+G VV +DLD
Sbjct: 503 QVSIVRPAANRLPLV-------GFSYHPLFASLSVGNILVVLGCLLKETRVAICSQHYALLGPVCEALTSLLFPFVWQGMYIPIMPYSMLDVLDAPVPFLVGLHSRYLKDVQAP-ARPIG-----VVFVDLD 621 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48140.11955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig48140.11955.1 >prot_H-elongata_contig48140.11955.1 ID=prot_H-elongata_contig48140.11955.1|Name=mRNA_H-elongata_contig48140.11955.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp QVSIHCPAFLRAPLEVTSAPLEAWATAVLFASVPEATILRAVDVLLLEKTback to top mRNA from alignment at H-elongata_contig48140:190..2578- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig48140.11955.1 ID=mRNA_H-elongata_contig48140.11955.1|Name=mRNA_H-elongata_contig48140.11955.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2389bp|location=Sequence derived from alignment at H-elongata_contig48140:190..2578- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig48140:190..2578- >mRNA_H-elongata_contig48140.11955.1 ID=mRNA_H-elongata_contig48140.11955.1|Name=mRNA_H-elongata_contig48140.11955.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig48140:190..2578- (Himanthalia elongata Himel1 dioecious)back to top |