mRNA_H-elongata_contig48028.11940.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig48028.11940.1 vs. uniprot
Match: D8LFP4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP4_ECTSI) HSP 1 Score: 118 bits (295), Expect = 6.860e-29 Identity = 58/83 (69.88%), Postives = 67/83 (80.72%), Query Frame = 3
Query: 3 ERDFSDAGRMMTSSRSSTDAKYVDMILFLHGNLDLIPEDIAELPANGVNGAQSKISGRLSNPLPELQGLAGAFDPVDLTEKEE 251
ERD AGRMMTSSRS+ DAKYV+M+LFLHGN+DL+PE I ELPA+GVNG Q+KI GRLSNP+ EL L G F PVDLT +E
Sbjct: 681 ERDLGSAGRMMTSSRSTGDAKYVEMVLFLHGNVDLLPEIIPELPADGVNGVQTKIPGRLSNPMLELHALDGEFGPVDLTNDDE 763
BLAST of mRNA_H-elongata_contig48028.11940.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 6.780e-24 Identity = 55/83 (66.27%), Postives = 66/83 (79.52%), Query Frame = 3
Query: 3 ERDFSDAGRMMTSSRSSTDAK-YVDMILFLHGNLDLIPEDIAELPANGVNGAQSKISGRLSNPLPELQGLAGAFDPVDLTEKE 248
ERDFS+AGRMMTSSR + D+ YV+MILFLHGNLDLIPEDI +L V A+SKI GRL+NP+ L+ L GAF PVDLT++E
Sbjct: 27 ERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDITKL-TEAV--ARSKIPGRLANPVEGLEQLDGAFAPVDLTDEE 106
BLAST of mRNA_H-elongata_contig48028.11940.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE) HSP 1 Score: 103 bits (257), Expect = 9.300e-24 Identity = 53/82 (64.63%), Postives = 66/82 (80.49%), Query Frame = 3
Query: 3 ERDFSDAGRMMTSSRSSTDAKYVDMILFLHGNLDLIPEDIAELPANGVNGAQSKISGRLSNPLPELQGLAGAFDPVDLTEKE 248
ERDFS+AGRMMTSSRS+ D+KYV+MI+FLHGNLDLIPEDI +L A++KI GRL+NP+ L+ L G F PVDLT++E
Sbjct: 639 ERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKLTEAA---ARTKIPGRLANPVERLEQLDGVFAPVDLTDEE 717
BLAST of mRNA_H-elongata_contig48028.11940.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE) HSP 1 Score: 102 bits (253), Expect = 2.310e-23 Identity = 55/82 (67.07%), Postives = 67/82 (81.71%), Query Frame = 3
Query: 3 ERDFSDAGRMMTSSRSSTDAKYVDMILFLHGNLDLIPEDIAELPANGVNGAQSKISGRLSNPLPELQGLAGAFDPVDLTEKE 248
E DFS+AGRMMTSSRS+ D+KYV+MILFLHGNLDLIPEDI +L V A++KI GRL+NP+ L+ L GAF PVDLT++E
Sbjct: 412 EHDFSNAGRMMTSSRSTMDSKYVEMILFLHGNLDLIPEDITKL-TEAV--ARTKIPGRLANPVEGLEQLDGAFAPVDLTDEE 490
BLAST of mRNA_H-elongata_contig48028.11940.1 vs. uniprot
Match: A0A6H5KW12_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW12_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 2.750e-23 Identity = 54/83 (65.06%), Postives = 65/83 (78.31%), Query Frame = 3
Query: 3 ERDFSDAGRMMTSSRSSTDAKY-VDMILFLHGNLDLIPEDIAELPANGVNGAQSKISGRLSNPLPELQGLAGAFDPVDLTEKE 248
ERDFS+AGRMMTSSRS+ D+KY V+MILFLHGNLDLIPEDI L V A++ GRL+NP+ L+ L GAF PVDLT++E
Sbjct: 27 ERDFSNAGRMMTSSRSAMDSKYYVEMILFLHGNLDLIPEDITTL-TEAV--ARTMFPGRLANPVEGLKQLDGAFTPVDLTDEE 106
BLAST of mRNA_H-elongata_contig48028.11940.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI) HSP 1 Score: 100 bits (249), Expect = 1.110e-22 Identity = 56/90 (62.22%), Postives = 63/90 (70.00%), Query Frame = 3
Query: 3 ERDFSDAGRMMTSSRSSTDAKYVDMILFLHGNLDLIPEDIAELPANGVNGAQSKISGRLSNPLPELQGLAGAFDPVDLTEKEEEAVSGDG 272
ERDF+DA MM SSRS+ DAKYV+M+LFLHGNLDLIPE I EL V Q+KI GRLSNP+PEL GL G VDLT E G+G
Sbjct: 579 ERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPELRDEDV---QAKIPGRLSNPIPELHGLDGTLGLVDLTNDEGGVGPGEG 665
BLAST of mRNA_H-elongata_contig48028.11940.1 vs. uniprot
Match: A0A6H5JML0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML0_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 7.600e-20 Identity = 47/79 (59.49%), Postives = 61/79 (77.22%), Query Frame = 3
Query: 12 FSDAGRMMTSSRSSTDAKYVDMILFLHGNLDLIPEDIAELPANGVNGAQSKISGRLSNPLPELQGLAGAFDPVDLTEKE 248
FS+AGRM TSSRS+ D+ YV+MI+FLHGNL+LIPEDI +L A++K GRL+NP+ L+ L GAF PVDLT++E
Sbjct: 178 FSNAGRMTTSSRSTMDSTYVEMIMFLHGNLNLIPEDITKLTEVV---ARTKFPGRLANPVDGLEPLDGAFAPVDLTDEE 253
BLAST of mRNA_H-elongata_contig48028.11940.1 vs. uniprot
Match: A0A6H5KGU9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU9_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 2.430e-18 Identity = 40/65 (61.54%), Postives = 52/65 (80.00%), Query Frame = 3
Query: 60 AKYVDMILFLHGNLDLIPEDIAELPANGVNGAQSK-ISGRLSNPLPELQGLAGAFDPVDLTEKEE 251
A YV+MILFLHGNLDLIP+DI LP +G + A +K + GRL NP P+L+ ++GAF PVDLTE++E
Sbjct: 65 AAYVEMILFLHGNLDLIPDDIPALPTDGPDSATNKHMPGRLKNPNPKLERISGAFGPVDLTEEDE 129
BLAST of mRNA_H-elongata_contig48028.11940.1 vs. uniprot
Match: A0A6H5KEK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK6_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 1.160e-16 Identity = 44/84 (52.38%), Postives = 55/84 (65.48%), Query Frame = 3
Query: 21 AGRMMTSSRSSTDAKYVDMILFLHGNLDLIPEDIAELPANGVNGAQSKISGRLSNPLPELQGLAGAFDPVDLTEKEEEAVSGDG 272
A R+ + ++ DAKYV+M+LFLHG LDL PE I EL ++ +KI GRLSNP+PEL GL G PVDLT EE G+G
Sbjct: 363 AARVDFGAPAAGDAKYVEMVLFLHGKLDLFPEQIPELRDEDIH---AKIPGRLSNPVPELHGLDGTLGPVDLTHDEEGVGPGEG 443
BLAST of mRNA_H-elongata_contig48028.11940.1 vs. uniprot
Match: A0A6H5L5L6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 2.660e-14 Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 3
Query: 3 ERDFSDAGRMMTSSRSSTDAKYVDMILFLHGNLDLIPEDI 122
E DF DAGR+MTSSRS+TDAKYV+MILFLHGNLDLIPEDI
Sbjct: 69 EGDFGDAGRIMTSSRSTTDAKYVEMILFLHGNLDLIPEDI 108 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48028.11940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig48028.11940.1 >prot_H-elongata_contig48028.11940.1 ID=prot_H-elongata_contig48028.11940.1|Name=mRNA_H-elongata_contig48028.11940.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp MMTSSRSSTDAKYVDMILFLHGNLDLIPEDIAELPANGVNGAQSKISGRLback to top mRNA from alignment at H-elongata_contig48028:1187..1472+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig48028.11940.1 ID=mRNA_H-elongata_contig48028.11940.1|Name=mRNA_H-elongata_contig48028.11940.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=286bp|location=Sequence derived from alignment at H-elongata_contig48028:1187..1472+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig48028:1187..1472+ >mRNA_H-elongata_contig48028.11940.1 ID=mRNA_H-elongata_contig48028.11940.1|Name=mRNA_H-elongata_contig48028.11940.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig48028:1187..1472+ (Himanthalia elongata Himel1 dioecious)back to top |