mRNA_H-elongata_contig48028.11940.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48028.11940.1
Unique NamemRNA_H-elongata_contig48028.11940.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig48028.11940.1 vs. uniprot
Match: D8LFP4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP4_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 6.860e-29
Identity = 58/83 (69.88%), Postives = 67/83 (80.72%), Query Frame = 3
Query:    3 ERDFSDAGRMMTSSRSSTDAKYVDMILFLHGNLDLIPEDIAELPANGVNGAQSKISGRLSNPLPELQGLAGAFDPVDLTEKEE 251
            ERD   AGRMMTSSRS+ DAKYV+M+LFLHGN+DL+PE I ELPA+GVNG Q+KI GRLSNP+ EL  L G F PVDLT  +E
Sbjct:  681 ERDLGSAGRMMTSSRSTGDAKYVEMVLFLHGNVDLLPEIIPELPADGVNGVQTKIPGRLSNPMLELHALDGEFGPVDLTNDDE 763          
BLAST of mRNA_H-elongata_contig48028.11940.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 6.780e-24
Identity = 55/83 (66.27%), Postives = 66/83 (79.52%), Query Frame = 3
Query:    3 ERDFSDAGRMMTSSRSSTDAK-YVDMILFLHGNLDLIPEDIAELPANGVNGAQSKISGRLSNPLPELQGLAGAFDPVDLTEKE 248
            ERDFS+AGRMMTSSR + D+  YV+MILFLHGNLDLIPEDI +L    V  A+SKI GRL+NP+  L+ L GAF PVDLT++E
Sbjct:   27 ERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDITKL-TEAV--ARSKIPGRLANPVEGLEQLDGAFAPVDLTDEE 106          
BLAST of mRNA_H-elongata_contig48028.11940.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 9.300e-24
Identity = 53/82 (64.63%), Postives = 66/82 (80.49%), Query Frame = 3
Query:    3 ERDFSDAGRMMTSSRSSTDAKYVDMILFLHGNLDLIPEDIAELPANGVNGAQSKISGRLSNPLPELQGLAGAFDPVDLTEKE 248
            ERDFS+AGRMMTSSRS+ D+KYV+MI+FLHGNLDLIPEDI +L       A++KI GRL+NP+  L+ L G F PVDLT++E
Sbjct:  639 ERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKLTEAA---ARTKIPGRLANPVERLEQLDGVFAPVDLTDEE 717          
BLAST of mRNA_H-elongata_contig48028.11940.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 2.310e-23
Identity = 55/82 (67.07%), Postives = 67/82 (81.71%), Query Frame = 3
Query:    3 ERDFSDAGRMMTSSRSSTDAKYVDMILFLHGNLDLIPEDIAELPANGVNGAQSKISGRLSNPLPELQGLAGAFDPVDLTEKE 248
            E DFS+AGRMMTSSRS+ D+KYV+MILFLHGNLDLIPEDI +L    V  A++KI GRL+NP+  L+ L GAF PVDLT++E
Sbjct:  412 EHDFSNAGRMMTSSRSTMDSKYVEMILFLHGNLDLIPEDITKL-TEAV--ARTKIPGRLANPVEGLEQLDGAFAPVDLTDEE 490          
BLAST of mRNA_H-elongata_contig48028.11940.1 vs. uniprot
Match: A0A6H5KW12_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW12_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.750e-23
Identity = 54/83 (65.06%), Postives = 65/83 (78.31%), Query Frame = 3
Query:    3 ERDFSDAGRMMTSSRSSTDAKY-VDMILFLHGNLDLIPEDIAELPANGVNGAQSKISGRLSNPLPELQGLAGAFDPVDLTEKE 248
            ERDFS+AGRMMTSSRS+ D+KY V+MILFLHGNLDLIPEDI  L    V  A++   GRL+NP+  L+ L GAF PVDLT++E
Sbjct:   27 ERDFSNAGRMMTSSRSAMDSKYYVEMILFLHGNLDLIPEDITTL-TEAV--ARTMFPGRLANPVEGLKQLDGAFTPVDLTDEE 106          
BLAST of mRNA_H-elongata_contig48028.11940.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.110e-22
Identity = 56/90 (62.22%), Postives = 63/90 (70.00%), Query Frame = 3
Query:    3 ERDFSDAGRMMTSSRSSTDAKYVDMILFLHGNLDLIPEDIAELPANGVNGAQSKISGRLSNPLPELQGLAGAFDPVDLTEKEEEAVSGDG 272
            ERDF+DA  MM SSRS+ DAKYV+M+LFLHGNLDLIPE I EL    V   Q+KI GRLSNP+PEL GL G    VDLT  E     G+G
Sbjct:  579 ERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPELRDEDV---QAKIPGRLSNPIPELHGLDGTLGLVDLTNDEGGVGPGEG 665          
BLAST of mRNA_H-elongata_contig48028.11940.1 vs. uniprot
Match: A0A6H5JML0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML0_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 7.600e-20
Identity = 47/79 (59.49%), Postives = 61/79 (77.22%), Query Frame = 3
Query:   12 FSDAGRMMTSSRSSTDAKYVDMILFLHGNLDLIPEDIAELPANGVNGAQSKISGRLSNPLPELQGLAGAFDPVDLTEKE 248
            FS+AGRM TSSRS+ D+ YV+MI+FLHGNL+LIPEDI +L       A++K  GRL+NP+  L+ L GAF PVDLT++E
Sbjct:  178 FSNAGRMTTSSRSTMDSTYVEMIMFLHGNLNLIPEDITKLTEVV---ARTKFPGRLANPVDGLEPLDGAFAPVDLTDEE 253          
BLAST of mRNA_H-elongata_contig48028.11940.1 vs. uniprot
Match: A0A6H5KGU9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU9_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.430e-18
Identity = 40/65 (61.54%), Postives = 52/65 (80.00%), Query Frame = 3
Query:   60 AKYVDMILFLHGNLDLIPEDIAELPANGVNGAQSK-ISGRLSNPLPELQGLAGAFDPVDLTEKEE 251
            A YV+MILFLHGNLDLIP+DI  LP +G + A +K + GRL NP P+L+ ++GAF PVDLTE++E
Sbjct:   65 AAYVEMILFLHGNLDLIPDDIPALPTDGPDSATNKHMPGRLKNPNPKLERISGAFGPVDLTEEDE 129          
BLAST of mRNA_H-elongata_contig48028.11940.1 vs. uniprot
Match: A0A6H5KEK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK6_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.160e-16
Identity = 44/84 (52.38%), Postives = 55/84 (65.48%), Query Frame = 3
Query:   21 AGRMMTSSRSSTDAKYVDMILFLHGNLDLIPEDIAELPANGVNGAQSKISGRLSNPLPELQGLAGAFDPVDLTEKEEEAVSGDG 272
            A R+   + ++ DAKYV+M+LFLHG LDL PE I EL    ++   +KI GRLSNP+PEL GL G   PVDLT  EE    G+G
Sbjct:  363 AARVDFGAPAAGDAKYVEMVLFLHGKLDLFPEQIPELRDEDIH---AKIPGRLSNPVPELHGLDGTLGPVDLTHDEEGVGPGEG 443          
BLAST of mRNA_H-elongata_contig48028.11940.1 vs. uniprot
Match: A0A6H5L5L6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.660e-14
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 3
Query:    3 ERDFSDAGRMMTSSRSSTDAKYVDMILFLHGNLDLIPEDI 122
            E DF DAGR+MTSSRS+TDAKYV+MILFLHGNLDLIPEDI
Sbjct:   69 EGDFGDAGRIMTSSRSTTDAKYVEMILFLHGNLDLIPEDI 108          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48028.11940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LFP4_ECTSI6.860e-2969.88Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KCJ3_9PHAE6.780e-2466.27Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE9.300e-2464.63Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JNY1_9PHAE2.310e-2367.07Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KW12_9PHAE2.750e-2365.06Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LBK4_ECTSI1.110e-2262.22Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JML0_9PHAE7.600e-2059.49Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KGU9_9PHAE2.430e-1861.54Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KEK6_9PHAE1.160e-1652.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5L6_9PHAE2.660e-1487.50Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48028contigH-elongata_contig48028:1187..1472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size286
Cds size249
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48028.11940.1prot_H-elongata_contig48028.11940.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48028 1216..1464 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930792.039685-UTR-H-elongata_contig48028:1186..12151622930792.039685-UTR-H-elongata_contig48028:1186..1215Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48028 1187..1215 +
1691679572.248729-UTR-H-elongata_contig48028:1186..12151691679572.248729-UTR-H-elongata_contig48028:1186..1215Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48028 1187..1215 +
1622930792.071877-UTR-H-elongata_contig48028:1464..14721622930792.071877-UTR-H-elongata_contig48028:1464..1472Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48028 1465..1472 +
1691679572.274865-UTR-H-elongata_contig48028:1464..14721691679572.274865-UTR-H-elongata_contig48028:1464..1472Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48028 1465..1472 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930792.0559528-CDS-H-elongata_contig48028:1215..14641622930792.0559528-CDS-H-elongata_contig48028:1215..1464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48028 1216..1464 +
1691679572.2632387-CDS-H-elongata_contig48028:1215..14641691679572.2632387-CDS-H-elongata_contig48028:1215..1464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48028 1216..1464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48028.11940.1

>prot_H-elongata_contig48028.11940.1 ID=prot_H-elongata_contig48028.11940.1|Name=mRNA_H-elongata_contig48028.11940.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
MMTSSRSSTDAKYVDMILFLHGNLDLIPEDIAELPANGVNGAQSKISGRL
SNPLPELQGLAGAFDPVDLTEKEEEAVSGDGY*
back to top

mRNA from alignment at H-elongata_contig48028:1187..1472+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48028.11940.1 ID=mRNA_H-elongata_contig48028.11940.1|Name=mRNA_H-elongata_contig48028.11940.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=286bp|location=Sequence derived from alignment at H-elongata_contig48028:1187..1472+ (Himanthalia elongata Himel1 dioecious)
TCGAGCGCGATTTCAGCGATGCTGGGCGCATGATGACGTCATCGAGAAGC TCCACCGATGCCAAGTACGTGGACATGATCCTTTTTCTGCACGGCAACCT GGACCTCATTCCCGAGGACATTGCAGAGCTGCCAGCCAACGGGGTCAACG GTGCGCAAAGCAAGATTTCCGGGCGGTTGTCCAACCCGCTGCCGGAGCTG CAAGGGCTAGCCGGTGCATTTGACCCAGTGGACCTAACCGAGAAGGAGGA GGAGGCTGTATCGGGAGATGGCTACTAAATCCAGGC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig48028:1187..1472+

>mRNA_H-elongata_contig48028.11940.1 ID=mRNA_H-elongata_contig48028.11940.1|Name=mRNA_H-elongata_contig48028.11940.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig48028:1187..1472+ (Himanthalia elongata Himel1 dioecious)
ATGATGACGTCATCGAGAAGCTCCACCGATGCCAAGTACGTGGACATGAT
CCTTTTTCTGCACGGCAACCTGGACCTCATTCCCGAGGACATTGCAGAGC
TGCCAGCCAACGGGGTCAACGGTGCGCAAAGCAAGATTTCCGGGCGGTTG
TCCAACCCGCTGCCGGAGCTGCAAGGGCTAGCCGGTGCATTTGACCCAGT
GGACCTAACCGAGAAGGAGGAGGAGGCTGTATCGGGAGATGGCTACTAAA
TGATGACGTCATCGAGAAGCTCCACCGATGCCAAGTACGTGGACATGATC
CTTTTTCTGCACGGCAACCTGGACCTCATTCCCGAGGACATTGCAGAGCT
GCCAGCCAACGGGGTCAACGGTGCGCAAAGCAAGATTTCCGGGCGGTTGT
CCAACCCGCTGCCGGAGCTGCAAGGGCTAGCCGGTGCATTTGACCCAGTG
GACCTAACCGAGAAGGAGGAGGAGGCTGTATCGGGAGATGGCTACTAA
back to top