mRNA_H-elongata_contig47925.11928.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig47925.11928.1
Unique Name	mRNA_H-elongata_contig47925.11928.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

[Close]

BLAST of mRNA_H-elongata_contig47925.11928.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 4.990e-35
Identity = 70/109 (64.22%), Postives = 81/109 (74.31%), Query Frame = 1

Query:   10 CCIFSGDDDNGSPDPLALLNDDDDLSPEDEMLKMSIPDGFILQACPPPALDQLIVKRGVLVKLGLGWFVEVITRRSHPLSGKKYDYRVILYDDESMRTMKLPLASYSTD 336
            C    GDD+  S DPL  L+DDD L   +E L+M IPDGF LQA PP ALDQ +VKRGVLVKLGLGWF  VI+RR+HP S  +YDYRV+L+ D S R+MKLPL SYSTD
Sbjct: 1847 CDESDGDDEKQSEDPLTQLHDDDQLCAGEESLEMDIPDGFQLQASPPSALDQSLVKRGVLVKLGLGWFGGVISRRAHPASRDEYDYRVVLHSDGSTRSMKLPLESYSTD 1955

[Close]

BLAST of mRNA_H-elongata_contig47925.11928.1 vs. uniprot
Match: A0A6H5KY33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY33_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 2.180e-33
Identity = 59/78 (75.64%), Postives = 67/78 (85.90%), Query Frame = 1

Query:   49 DPLALLNDDDDLSPEDEMLKMSIPDGFILQACPPPALDQLIVKRGVLVKLGLGWFVEVITRRSHPLSGKKYDYRVILY 282
            DPL  L+DDD+LSPE+E LKM IPDGF LQA PPPALDQ IVKRGVLVKLGLGWF  V++RRSHP S ++YDYRVIL+
Sbjct:   15 DPLTQLDDDDELSPEEETLKMDIPDGFRLQASPPPALDQSIVKRGVLVKLGLGWFGGVLSRRSHPASRQEYDYRVILH 92

[Close]

BLAST of mRNA_H-elongata_contig47925.11928.1 vs. uniprot
Match: A0A6H5JAW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW0_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.230e-27
Identity = 56/77 (72.73%), Postives = 62/77 (80.52%), Query Frame = 1

Query:  109 MSIPDGFILQACPPPALDQLIVKRGVLVKLGLGWFVEVITRRSHPLSGKKYDYRVILYD-DESMRTMKLPLASYSTD 336
            M IPDGF LQA PPP LDQ IVKRGVLVKLGL WF  VI+RRSHP S ++YDYRVIL+  DES R+MK+PL S STD
Sbjct:    1 MDIPDGFRLQASPPPTLDQSIVKRGVLVKLGLYWFGGVISRRSHPASRQEYDYRVILHCCDESTRSMKMPLESCSTD 77

[Close]

BLAST of mRNA_H-elongata_contig47925.11928.1 vs. uniprot
Match: A0A6H5JNC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNC1_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.280e-26
Identity = 52/67 (77.61%), Postives = 56/67 (83.58%), Query Frame = 1

Query:   49 DPLALLNDDDDLSPEDEMLKMSIPDGFILQACPPPALDQLIVKRGVLVKLGLGWFVEVITRRSHPLS 249
            DPL  L+DDD+LSPE+E LKM IPDGF LQA PPPALDQ IVKRGVLVK GLGWF  VI+RRSHP S
Sbjct:   68 DPLTQLDDDDELSPEEETLKMDIPDGFRLQASPPPALDQSIVKRGVLVKFGLGWFGGVISRRSHPAS 134

[Close]

BLAST of mRNA_H-elongata_contig47925.11928.1 vs. uniprot
Match: A0A6H5LD01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD01_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.020e-26
Identity = 53/76 (69.74%), Postives = 61/76 (80.26%), Query Frame = 1

Query:  109 MSIPDGFILQACPPPALDQLIVKRGVLVKLGLGWFVEVITRRSHPLSGKKYDYRVILYDDESMRTMKLPLASYSTD 336
            M IPD F LQA PPPAL+Q IVKRG LV+LGLGWF  VI+RRSHP S ++ DYRVIL+  ES R+MK+PL SYSTD
Sbjct:    1 MDIPDRFRLQASPPPALNQSIVKRGSLVQLGLGWFGGVISRRSHPGSRQENDYRVILHCTESTRSMKMPLESYSTD 76

[Close]

BLAST of mRNA_H-elongata_contig47925.11928.1 vs. uniprot
Match: A0A6H5JUF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUF4_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 6.840e-26
Identity = 59/95 (62.11%), Postives = 69/95 (72.63%), Query Frame = 1

Query:   52 PLALLNDDDDLSPEDEMLKMSIPDGFILQACPPPALDQLIVKRGVLVKLGLGWFVEVITRRSHPLSGKKYDYRVILYDDESMRTMKLPLASYSTD 336
            PL  L+ D +LSPE+E LKM I +GF LQA PPPALDQ IVKRGVL+KLGLGWF            G +YDYRVIL+ DES R+MK+PL SYST+
Sbjct:   75 PLTQLDADGELSPEEETLKMDILNGFRLQASPPPALDQSIVKRGVLLKLGLGWF------------GGEYDYRVILHCDESTRSMKMPLESYSTE 157

[Close]

BLAST of mRNA_H-elongata_contig47925.11928.1 vs. uniprot
Match: A0A6H5L5J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J8_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.240e-22
Identity = 49/97 (50.52%), Postives = 68/97 (70.10%), Query Frame = 1

Query:   37 NGSPDPLALLNDDDDLSPEDEMLKMSIPDGFILQACPPPALDQLIVKRGVLVKLGLGWFVEVITRRSHPLSGKKYDYRVILYDDESMRTMKLPLASY 327
            +G  + L+L++DDD +  +DE+  M IPDGF +QAC P A+D  +++RGVLV+LG+GWF  VITR+S   +   YDYRV L  D+S  +MKLPL  Y
Sbjct:  243 SGQMEELSLVDDDDSMESDDEIHAMEIPDGFCIQACTPAAIDSSLLQRGVLVRLGMGWFGGVITRKSQERTRHLYDYRVHLDLDQSTSSMKLPLEMY 339

[Close]

BLAST of mRNA_H-elongata_contig47925.11928.1 vs. uniprot
Match: A0A6H5KUT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT4_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 2.700e-22
Identity = 50/94 (53.19%), Postives = 66/94 (70.21%), Query Frame = 1

Query:   37 NGSPDPLALLNDDDDLSPEDEMLKMSIPDGFILQACPPPALDQLIVKRGVLVKLGLGWFVEVITRRSHPLSGKKYDYRVILYDDESMRTMKLPL 318
            +G  + L+L++DDD +  +DE+L M IPDGF +QA  P ALD    +RGVLV+LG+GWF  VITR+S   +   YDYRV L  D+S R+MKLPL
Sbjct:  120 SGQMNELSLVDDDDSMESDDEILAMEIPDGFRIQASTPAALDSSSPQRGVLVRLGMGWFGRVITRQSQERTRHLYDYRVHLDLDQSTRSMKLPL 213

[Close]

BLAST of mRNA_H-elongata_contig47925.11928.1 vs. uniprot
Match: A0A6H5KHL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHL7_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 7.800e-22
Identity = 48/96 (50.00%), Postives = 65/96 (67.71%), Query Frame = 1

Query:   49 DPLALLNDDDDLSPEDEMLKMSIPDGFILQACPPPALDQLIVKRGVLVKLGLGWFVEVITRRSHPLSGKKYDYRVILYDDESMRTMKLPLASYSTD 336
            D L+ ++DDD +  +DE+  M IPDGF +QA  P ALD L+++RG+LV+LG+GWF  +ITR+S   +   YDYRV L  D+S R MKL L  Y  D
Sbjct:    2 DELSHVDDDDSMESDDEIRAMEIPDGFRIQASTPAALDNLLLQRGLLVRLGMGWFGGLITRQSQERTRHLYDYRVHLDLDQSTRGMKLQLEMYKGD 97

[Close]

BLAST of mRNA_H-elongata_contig47925.11928.1 vs. uniprot
Match: A0A6H5K4S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S7_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 2.510e-21
Identity = 56/115 (48.70%), Postives = 74/115 (64.35%), Query Frame = 1

Query:   16 IFSGDDDNGS-----PDPLALLNDDDDLSP---EDEMLKMSIPDGFILQACPPPALDQLIVKRGVLVKLGLGWFVEVITRRSHPLSGKKYDYRVILYDDESMRTMKLPLASYSTD 336
            + S D+D+G       D LALL+DDD + P   EDE+  M IP GF +Q   P ALD+L+++RGVLV+LG+GWF  +IT++S   +   YDY V L  D+S R MKLPL  YS D
Sbjct:  149 VDSSDEDDGDISQPQTDELALLDDDDSMEPQDPEDEIQGMEIPAGFRIQEAKPVALDRLLLRRGVLVRLGMGWFGGLITQQSQKDTRHLYDYCVQLELDQSTRKMKLPLDKYSGD 263

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig47925.11928.1 vs. uniprot

BLAST of mRNA_H-elongata_contig47925.11928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JH58_9PHAE	4.990e-35	64.22	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5KY33_9PHAE	2.180e-33	75.64	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JAW0_9PHAE	1.230e-27	72.73	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JNC1_9PHAE	1.280e-26	77.61	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5LD01_9PHAE	2.020e-26	69.74	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JUF4_9PHAE	6.840e-26	62.11	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L5J8_9PHAE	1.240e-22	50.52	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KUT4_9PHAE	2.700e-22	53.19	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KHL7_9PHAE	7.800e-22	50.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K4S7_9PHAE	2.510e-21	48.70	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig47925	contig	H-elongata_contig47925:3820..4155 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	89.7
Seed ortholog evalue	9.1e-16
Seed eggNOG ortholog	2880.D7FI08
EggNOG OGs	2DCSR@1,2S5KN@2759
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Exons	1
Model size	336
Cds size	336
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930790.3625762-CDS-H-elongata_contig47925:3819..4155	1622930790.3625762-CDS-H-elongata_contig47925:3819..4155	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig47925 3820..4155 +
1691679571.4352195-CDS-H-elongata_contig47925:3819..4155	1691679571.4352195-CDS-H-elongata_contig47925:3819..4155	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig47925 3820..4155 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig47925.11928.1	prot_H-elongata_contig47925.11928.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig47925 3820..4155 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig47925:3820..4155+
coding sequence from alignment at H-elongata_contig47925:3820..4155+

protein sequence of mRNA_H-elongata_contig47925.11928.1

>prot_H-elongata_contig47925.11928.1 ID=prot_H-elongata_contig47925.11928.1|Name=mRNA_H-elongata_contig47925.11928.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
MPLCCIFSGDDDNGSPDPLALLNDDDDLSPEDEMLKMSIPDGFILQACPP
PALDQLIVKRGVLVKLGLGWFVEVITRRSHPLSGKKYDYRVILYDDESMR
TMKLPLASYSTD

mRNA from alignment at H-elongata_contig47925:3820..4155+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig47925.11928.1 ID=mRNA_H-elongata_contig47925.11928.1|Name=mRNA_H-elongata_contig47925.11928.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=336bp|location=Sequence derived from alignment at H-elongata_contig47925:3820..4155+ (Himanthalia elongata Himel1 dioecious)
ATGCCCCTCTGTTGTATATTTTCAGGGGACGACGACAACGGAAGTCCAGA
CCCGCTCGCCCTGCTCAACGATGATGACGACTTGTCGCCCGAGGACGAAA
TGCTGAAGATGAGCATTCCGGACGGGTTTATACTTCAGGCGTGCCCACCG
CCGGCCCTCGATCAGTTGATAGTGAAGCGTGGGGTCCTCGTGAAACTCGG
ACTGGGTTGGTTTGTCGAGGTGATAACTCGCAGATCTCATCCCCTTTCAG
GGAAGAAGTACGACTACCGGGTCATCCTTTACGATGATGAAAGCATGCGT
ACCATGAAGTTGCCGTTGGCGTCGTACAGTACGGAT

Coding sequence (CDS) from alignment at H-elongata_contig47925:3820..4155+

>mRNA_H-elongata_contig47925.11928.1 ID=mRNA_H-elongata_contig47925.11928.1|Name=mRNA_H-elongata_contig47925.11928.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig47925:3820..4155+ (Himanthalia elongata Himel1 dioecious)
ATGCCCCTCTGTTGTATATTTTCAGGGGACGACGACAACGGAAGTCCAGA
CCCGCTCGCCCTGCTCAACGATGATGACGACTTGTCGCCCGAGGACGAAA
TGCTGAAGATGAGCATTCCGGACGGGTTTATACTTCAGGCGTGCCCACCG
CCGGCCCTCGATCAGTTGATAGTGAAGCGTGGGGTCCTCGTGAAACTCGG
ACTGGGTTGGTTTGTCGAGGTGATAACTCGCAGATCTCATCCCCTTTCAG
GGAAGAAGTACGACTACCGGGTCATCCTTTACGATGATGAAAGCATGCGT
ACCATGAAGTTGCCGTTGGCGTCGTACAGTACGGATATGCCCCTCTGTTG
TATATTTTCAGGGGACGACGACAACGGAAGTCCAGACCCGCTCGCCCTGC
TCAACGATGATGACGACTTGTCGCCCGAGGACGAAATGCTGAAGATGAGC
ATTCCGGACGGGTTTATACTTCAGGCGTGCCCACCGCCGGCCCTCGATCA
GTTGATAGTGAAGCGTGGGGTCCTCGTGAAACTCGGACTGGGTTGGTTTG
TCGAGGTGATAACTCGCAGATCTCATCCCCTTTCAGGGAAGAAGTACGAC
TACCGGGTCATCCTTTACGATGATGAAAGCATGCGTACCATGAAGTTGCC
GTTGGCGTCGTACAGTACGGAT