mRNA_H-elongata_contig47664.11903.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47664.11903.1
Unique NamemRNA_H-elongata_contig47664.11903.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig47664.11903.1 vs. uniprot
Match: D7FQ02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ02_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 4.260e-21
Identity = 60/79 (75.95%), Postives = 65/79 (82.28%), Query Frame = 1 
Query:    1 SGGPTKQGGERTGL-LSA--SVGSMGGELRGGELERVRGRVKDLGAAIETSQSKLLQELSQVQEEFFSSFSYTPQLGAS 228
            SGG  ++ GER G  LSA  SVGS+ GELRGGELERVRGRV DLGAAIETSQSKLL+ELSQVQE+FFSSF Y   LGAS
Sbjct:   45 SGGRGEEEGERDGPGLSARVSVGSVAGELRGGELERVRGRVADLGAAIETSQSKLLRELSQVQEDFFSSFGYATPLGAS 123
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47664.11903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQ02_ECTSI4.260e-2175.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47664contigH-elongata_contig47664:3133..3631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930787.6762998-CDS-H-elongata_contig47664:3132..32791622930787.6762998-CDS-H-elongata_contig47664:3132..3279Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47664 3133..3279 +
1691679570.2931802-CDS-H-elongata_contig47664:3132..32791691679570.2931802-CDS-H-elongata_contig47664:3132..3279Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47664 3133..3279 +
1622930787.6958513-CDS-H-elongata_contig47664:3550..36311622930787.6958513-CDS-H-elongata_contig47664:3550..3631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47664 3551..3631 +
1691679570.3072097-CDS-H-elongata_contig47664:3550..36311691679570.3072097-CDS-H-elongata_contig47664:3550..3631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47664 3551..3631 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47664.11903.1prot_H-elongata_contig47664.11903.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47664 3133..3631 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47664.11903.1

>prot_H-elongata_contig47664.11903.1 ID=prot_H-elongata_contig47664.11903.1|Name=mRNA_H-elongata_contig47664.11903.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
SGGPTKQGGERTGLLSASVGSMGGELRGGELERVRGRVKDLGAAIETSQS
KLLQELSQVQEEFFSSFSYTPQLGAS
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mRNA from alignment at H-elongata_contig47664:3133..3631+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47664.11903.1 ID=mRNA_H-elongata_contig47664.11903.1|Name=mRNA_H-elongata_contig47664.11903.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=499bp|location=Sequence derived from alignment at H-elongata_contig47664:3133..3631+ (Himanthalia elongata Himel1 dioecious)
TCGGGAGGACCAACTAAGCAGGGAGGAGAAAGAACAGGGCTGTTGTCGGC
GTCCGTAGGATCTATGGGGGGCGAGCTTCGAGGAGGAGAGCTGGAGCGCG
TGCGTGGTAGGGTGAAGGATCTCGGCGCGGCGATCGAGACATCTCAGGTG
TGAAGCACTTGCGGATACGCGCGCACGCGCAGTCGAGAGCGTCCCTTTGT
ATTTCATGTTCGTGACTCGCGTATTGGGATCCCGGAAGTTACTCCACGAT
GCGATGTCTGTAAAGACGAAAATATATATATATTCACGTGCGACATGACA
CGAATTGATGTTTGTCCCATCTGACAGTTCGACCACCTAGCCCAGCGCCG
CACGCTGACTGAATTGCGAGTGCTCTCTCGGAATCCGATCGTTTATCCAC
TCCTATCCTCCGCACCAGTCCAAGCTACTACAAGAATTATCTCAAGTGCA
GGAAGAATTTTTCTCCAGCTTCAGCTATACGCCTCAGCTGGGCGCCAGC
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Coding sequence (CDS) from alignment at H-elongata_contig47664:3133..3631+

>mRNA_H-elongata_contig47664.11903.1 ID=mRNA_H-elongata_contig47664.11903.1|Name=mRNA_H-elongata_contig47664.11903.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig47664:3133..3631+ (Himanthalia elongata Himel1 dioecious)
TCGGGAGGACCAACTAAGCAGGGAGGAGAAAGAACAGGGCTGTTGTCGGC
GTCCGTAGGATCTATGGGGGGCGAGCTTCGAGGAGGAGAGCTGGAGCGCG
TGCGTGGTAGGGTGAAGGATCTCGGCGCGGCGATCGAGACATCTCAGTCG
GGAGGACCAACTAAGCAGGGAGGAGAAAGAACAGGGCTGTTGTCGGCGTC
CGTAGGATCTATGGGGGGCGAGCTTCGAGGAGGAGAGCTGGAGCGCGTGC
GTGGTAGGGTGAAGGATCTCGGCGCGGCGATCGAGACATCTCAGTCCAAG
CTACTACAAGAATTATCTCAAGTGCAGGAAGAATTTTTCTCCAGCTTCAG
CTATACGCCTCAGCTGGGCGCCAGCTCCAAGCTACTACAAGAATTATCTC
AAGTGCAGGAAGAATTTTTCTCCAGCTTCAGCTATACGCCTCAGCTGGGC
GCCAGC
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