mRNA_H-elongata_contig47621.11899.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47621.11899.1
Unique NamemRNA_H-elongata_contig47621.11899.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig47621.11899.1 vs. uniprot
Match: D7G621_ECTSI (Histidine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G621_ECTSI)

HSP 1 Score: 321 bits (823), Expect = 1.430e-104
Identity = 156/177 (88.14%), Postives = 163/177 (92.09%), Query Frame = 1
Query:   88 VEKLDLNPPKGTRDVFPENMRLRNWLFGHWRHVALSFGFEEYDAPVLENEALYVRKSGEEVTQQLYCFEDKGGRRVSLRPEMTPSLARMVMAKRKSLNLPVKWFSLPQCWRYERMTRGRRREHYQWNMDIWGVPGVEAEAELLGAMVTFFERVGLGAEDVGIKVSSSERLKKPLLSL 618
            VEKLDL PPKGTRDVFPE+MRLRNWLFGHWR VA SFGFEEYDAPVLE+E+LY RKSGEEVTQQLYCFEDKGGRRVSLRPEMTPSLARMVMAKRKSL LPVKWFS+PQCWRYERMTRGRRREHYQWNMDIWGV GV AEAELLGAMVTFFERVGL AEDVGI+V+S   L + L SL
Sbjct:  136 VEKLDLKPPKGTRDVFPEDMRLRNWLFGHWRGVASSFGFEEYDAPVLESESLYTRKSGEEVTQQLYCFEDKGGRRVSLRPEMTPSLARMVMAKRKSLTLPVKWFSIPQCWRYERMTRGRRREHYQWNMDIWGVSGVAAEAELLGAMVTFFERVGLRAEDVGIRVNSRGVLTEVLHSL 312          
BLAST of mRNA_H-elongata_contig47621.11899.1 vs. uniprot
Match: L1K527_GUITC (Histidine--tRNA ligase n=2 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K527_GUITC)

HSP 1 Score: 301 bits (772), Expect = 9.870e-98
Identity = 148/200 (74.00%), Postives = 168/200 (84.00%), Query Frame = 1
Query:   19 GRASAAVLQDAERRSNAGGSATPVEKLDLNPPKGTRDVFPENMRLRNWLFGHWRHVALSFGFEEYDAPVLENEALYVRKSGEEVTQQLYCFEDKGGRRVSLRPEMTPSLARMVMAKRKSLNLPVKWFSLPQCWRYERMTRGRRREHYQWNMDIWGVPGVEAEAELLGAMVTFFERVGLGAEDVGIKVSSSERLKKPLLSL 618
            GRASAAV Q  E+      S    EKLDL PPKGTRD +PE+MR+RNWLFGHW+ VA   GFEEYDAPVLE+E LY+RK+GEEVTQQLY FEDKG RRVSLRPEMTPSLARMVMA+ KSL LPVKWFS+PQCWRYERMTRGRRREHYQWNMDIWGVPG+EAEAELL A+VTFF+RVG+ ++DVGIKV+S   L + L ++
Sbjct:   57 GRASAAVAQSKEK------STGKKEKLDLKPPKGTRDFYPEDMRMRNWLFGHWKDVARLHGFEEYDAPVLESEELYIRKAGEEVTQQLYNFEDKGERRVSLRPEMTPSLARMVMARGKSLTLPVKWFSIPQCWRYERMTRGRRREHYQWNMDIWGVPGIEAEAELLSAIVTFFKRVGITSQDVGIKVNSRAVLSEVLTAM 250          
BLAST of mRNA_H-elongata_contig47621.11899.1 vs. uniprot
Match: A0A7S2KC09_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KC09_9STRA)

HSP 1 Score: 291 bits (744), Expect = 3.070e-97
Identity = 141/189 (74.60%), Postives = 160/189 (84.66%), Query Frame = 1
Query:   13 GGGRASAAVLQDAE--RRSNAGGSATPVEKLDLNPPKGTRDVFPENMRLRNWLFGHWRHVALSFGFEEYDAPVLENEALYVRKSGEEVTQQLYCFEDKGGRRVSLRPEMTPSLARMVMAKRKSLNLPVKWFSLPQCWRYERMTRGRRREHYQWNMDIWGVPGVEAEAELLGAMVTFFERVGLGAEDVGI 573
            GGGR S+AV QD E   +++     T  E+LD NPPKGTRD FPE++R+RNWLF  WR VA +FGF EYD+PVLENE+LY RK+GEEVTQQLY FEDKGGRRVSLRPEMTPSLARMVM+K+  L +P+KWFSLPQCWRYERMTRGRRREHYQWNMD+WGVPG+EAEAELL AMVTFFE VGL + DVGI
Sbjct:   44 GGGRVSSAV-QDKEVLDKTSKSSGKTKRERLDTNPPKGTRDFFPEDLRMRNWLFTEWREVAATFGFSEYDSPVLENESLYTRKAGEEVTQQLYSFEDKGGRRVSLRPEMTPSLARMVMSKKGGLPMPLKWFSLPQCWRYERMTRGRRREHYQWNMDVWGVPGIEAEAELLSAMVTFFENVGLNSRDVGI 231          
BLAST of mRNA_H-elongata_contig47621.11899.1 vs. uniprot
Match: A0A7S2ALP5_9STRA (Histidine--tRNA ligase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ALP5_9STRA)

HSP 1 Score: 286 bits (732), Expect = 9.230e-92
Identity = 138/202 (68.32%), Postives = 166/202 (82.18%), Query Frame = 1
Query:   13 GGGRASAAVLQDAERRSNAGGSATPVEKLDLNPPKGTRDVFPENMRLRNWLFGHWRHVALSFGFEEYDAPVLENEALYVRKSGEEVTQQLYCFEDKGGRRVSLRPEMTPSLARMVMAKRKSLNLPVKWFSLPQCWRYERMTRGRRREHYQWNMDIWGVPGVEAEAELLGAMVTFFERVGLGAEDVGIKVSSSERLKKPLLSL 618
            GGGR SAAV QD  ++ +        EKLDL PP+GTRD +PE+MRL+ WLF HW+ VA   GF EYD+PVLENEALY+RK+GEEV+QQLY FEDKGGR VSLRPEMTPSLARMVMAK+++L++P+KW+S+PQCWRYERMTRGRRREHYQWNMDIWGV G  AEAELLG +V FF+RVGL A+D+G+KV+S + L + L  L
Sbjct:   49 GGGRQSAAVEQDKSKKPSTS------EKLDLAPPRGTRDFYPEDMRLQRWLFSHWQEVARLHGFSEYDSPVLENEALYIRKAGEEVSQQLYNFEDKGGRAVSLRPEMTPSLARMVMAKKRTLSMPLKWYSIPQCWRYERMTRGRRREHYQWNMDIWGVAGPTAEAELLGCIVAFFQRVGLTADDIGVKVNSRQVLSELLNKL 244          
BLAST of mRNA_H-elongata_contig47621.11899.1 vs. uniprot
Match: A0A6V2QQD5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2QQD5_9STRA)

HSP 1 Score: 279 bits (713), Expect = 9.320e-92
Identity = 137/192 (71.35%), Postives = 158/192 (82.29%), Query Frame = 1
Query:   13 GGGRASAAVLQ-DAERRSNAGGSATPVEKLDLNPPKGTRDVFPENMRLRNWLFGHWRHVALSFGFEEYDAPVLENEALYVRKSGEEVTQQLYCFEDKGGRRVSLRPEMTPSLARMVMAKRKSLNLPVKWFSLPQCWRYERMTRGRRREHYQWNMDIWGVPGVEAEAELLGAMVTFFERVGLGAEDVGIKVSS 585
            GGGR SA V   +   +++   S    ++LD NPPKGTRD +PE+MRLR WLF HWR VA ++GF EYDAPVLE+EALY RK+GEEVTQQLY F DKG R V+LRPEMTPSLARMVMAK+  LNLP+KW S+PQCWRYERMTRGRRREH+QWNMD+WGV GVEAEAELL AMVTFFE VGL ++DVGIKV+S
Sbjct:   54 GGGRVSAGVKDTNILDKTDTSKSMKKQKQLDTNPPKGTRDFYPEDMRLRTWLFDHWRSVASTYGFSEYDAPVLESEALYTRKAGEEVTQQLYNFMDKGDRAVALRPEMTPSLARMVMAKKGGLNLPLKWHSIPQCWRYERMTRGRRREHFQWNMDVWGVQGVEAEAELLSAMVTFFENVGLTSDDVGIKVNS 245          
BLAST of mRNA_H-elongata_contig47621.11899.1 vs. uniprot
Match: F0YFS7_AURAN (Histidine--tRNA ligase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFS7_AURAN)

HSP 1 Score: 285 bits (730), Expect = 1.120e-91
Identity = 142/199 (71.36%), Postives = 164/199 (82.41%), Query Frame = 1
Query:   19 GRASAAVLQDAERRSNAGGSATPVEK--LDLNPPKGTRDVFPENMRLRNWLFGHWRHVALSFGFEEYDAPVLENEALYVRKSGEEVTQQLYCFEDKGGRRVSLRPEMTPSLARMVMAKRKSLNLPVKWFSLPQCWRYERMTRGRRREHYQWNMDIWGVPGVEAEAELLGAMVTFFERVGLGAEDVGIKVSSSERLKKPL 609
            GRASAAV Q  +        ATP  +  LDLNPP+GTRD +PE +R+RNWLFG WR  A + GFEEYD+PVLE+EALYVRK+GEEVTQQLY FEDKGGRRV+LRPEMTPSLARMVMA++ +L LPVKWFS+PQCWRYER TRGRRREHYQWNMDIWGVPGV AEAE+L A+V FFERVG+ + DVGIK++S E L + L
Sbjct:   24 GRASAAVSQKEQA------PATPETQAALDLNPPRGTRDFYPEELRVRNWLFGQWRATAAAHGFEEYDSPVLESEALYVRKAGEEVTQQLYNFEDKGGRRVALRPEMTPSLARMVMARKNALPLPVKWFSVPQCWRYERTTRGRRREHYQWNMDIWGVPGVTAEAEVLAAVVGFFERVGIDSADVGIKINSREVLAELL 216          
BLAST of mRNA_H-elongata_contig47621.11899.1 vs. uniprot
Match: A0A835Z4P1_9STRA (Histidine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4P1_9STRA)

HSP 1 Score: 281 bits (719), Expect = 9.920e-91
Identity = 132/174 (75.86%), Postives = 151/174 (86.78%), Query Frame = 1
Query:   97 LDLNPPKGTRDVFPENMRLRNWLFGHWRHVALSFGFEEYDAPVLENEALYVRKSGEEVTQQLYCFEDKGGRRVSLRPEMTPSLARMVMAKRKSLNLPVKWFSLPQCWRYERMTRGRRREHYQWNMDIWGVPGVEAEAELLGAMVTFFERVGLGAEDVGIKVSSSERLKKPLLSL 618
            +D NP KGTRD++PE+MRLR WLFGHWR VA  +GFEEYDAPVLE+EALYVRKSGEEVTQQLY FEDKG RRV+LRPEMTPSLARM+MA+R  + LPVKWFSLPQCWRYERMTRGRRREHYQWNMDIWGV GVEAEAELL A+V+FF  +G+ + DVG+KV+S   L + + SL
Sbjct:    1 MDANPVKGTRDMYPEDMRLRTWLFGHWRKVAEQYGFEEYDAPVLESEALYVRKSGEEVTQQLYNFEDKGERRVALRPEMTPSLARMIMARRNGVTLPVKWFSLPQCWRYERMTRGRRREHYQWNMDIWGVQGVEAEAELLAAVVSFFTNIGITSADVGMKVNSRAALGEIMTSL 174          
BLAST of mRNA_H-elongata_contig47621.11899.1 vs. uniprot
Match: A0A8J2SWN3_9STRA (Histidine--tRNA ligase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SWN3_9STRA)

HSP 1 Score: 282 bits (722), Expect = 2.360e-90
Identity = 142/192 (73.96%), Postives = 160/192 (83.33%), Query Frame = 1
Query:   10 AGGGRASAAVLQDAERRSNAGGSATPVEKLDLNPPKGTRDVFPENMRLRNWLFGHWRHVALSFGFEEYDAPVLENEALYVRKSGEEVTQQLYCFEDKGGRRVSLRPEMTPSLARMVMAKRKSLNLPVKWFSLPQCWRYERMTRGRRREHYQWNMDIWGVPGVEAEAELLGAMVTFFERVGLGAEDVGIKVSS 585
            AGGGRASAAV Q   R ++        EKLDL PP+GTRDV+PE+MR+RNWLFG WR  A +FGFEEYDAPVLENEALYVRK+GEEVTQQLY FEDKGGRRV+LRPEMTPSLARMVMA++ +   P+KWFS+PQCWRYER TRGRRREHYQWNMDIWGV G  AEAE L AMV+F E VGL ++DVGIKV+S
Sbjct:   32 AGGGRASAAVEQKKARPAS-------TEKLDLAPPRGTRDVYPEDMRVRNWLFGKWRSTAKAFGFEEYDAPVLENEALYVRKAGEEVTQQLYNFEDKGGRRVALRPEMTPSLARMVMARKPTP--PLKWFSIPQCWRYERTTRGRRREHYQWNMDIWGVDGAAAEAEALAAMVSFMESVGLTSDDVGIKVNS 214          
BLAST of mRNA_H-elongata_contig47621.11899.1 vs. uniprot
Match: W7U324_9STRA (Histidine--tRNA ligase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U324_9STRA)

HSP 1 Score: 282 bits (721), Expect = 1.570e-89
Identity = 143/201 (71.14%), Postives = 159/201 (79.10%), Query Frame = 1
Query:   16 GGRASAAVLQDAERRSNAGGSATPVEKLDLNPPKGTRDVFPENMRLRNWLFGHWRHVALSFGFEEYDAPVLENEALYVRKSGEEVTQQLYCFEDKGGRRVSLRPEMTPSLARMVMAKRKSLNLPVKWFSLPQCWRYERMTRGRRREHYQWNMDIWGVPGVEAEAELLGAMVTFFERVGLGAEDVGIKVSSSERLKKPLLSL 618
            G R SAAV QD +             KLDLNPP+GTRD +PE+MR R+WLF  WR VA    FEEYDAPVLE+E L+VRK+GEEVT+QLY FEDKGGRRV+LRPEMTPSLARMVMAKR  L +PVKWFS PQCWRYERMTRGRRREHYQWNMD+WGV GVEAEAELL A+ TFF+RVGL AEDVGIKVSS   L + L +L
Sbjct:   86 GSRGSAAVAQDLKNSRET--QKERQGKLDLNPPRGTRDFYPEDMRTRSWLFELWRQVARDHAFEEYDAPVLESEDLFVRKAGEEVTEQLYNFEDKGGRRVALRPEMTPSLARMVMAKRNGLVMPVKWFSFPQCWRYERMTRGRRREHYQWNMDVWGVSGVEAEAELLSAITTFFKRVGLTAEDVGIKVSSRGVLAEVLAAL 284          
BLAST of mRNA_H-elongata_contig47621.11899.1 vs. uniprot
Match: A0A448ZRZ3_9STRA (Histidine--tRNA ligase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZRZ3_9STRA)

HSP 1 Score: 280 bits (715), Expect = 4.470e-89
Identity = 140/192 (72.92%), Postives = 156/192 (81.25%), Query Frame = 1
Query:   16 GGRASAAVLQDAERRSNAGGSATPVE--KLDLNPPKGTRDVFPENMRLRNWLFGHWRHVALSFGFEEYDAPVLENEALYVRKSGEEVTQQLYCFEDKGGRRVSLRPEMTPSLARMVMAKRKSLNLPVKWFSLPQCWRYERMTRGRRREHYQWNMDIWGVPGVEAEAELLGAMVTFFERVGLGAEDVGIKVSS 585
            GGR SA+V QD       GG        KLD NPPKGTRD +PE+MRLRNWLF  WR VA  +GF EYDAPVLE+E+LY RK+GEEVTQQLY FEDKG RRV+LRPEMTPSLARMVMAK+  L LP+KWFS+PQCWRYERMTRGRRREH+QWNMDIWG+ G EA+AELL AMVTFFE VGL +EDVGIKV+S
Sbjct:   59 GGRVSASV-QDKNVXEKTGGKKKKKXQPKLDTNPPKGTRDFYPEDMRLRNWLFDQWRDVAKQYGFSEYDAPVLESESLYTRKAGEEVTQQLYNFEDKGERRVALRPEMTPSLARMVMAKKGGLPLPLKWFSIPQCWRYERMTRGRRREHFQWNMDIWGIAGEEADAELLSAMVTFFESVGLTSEDVGIKVNS 249          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47621.11899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G621_ECTSI1.430e-10488.14Histidine--tRNA ligase n=1 Tax=Ectocarpus siliculo... [more]
L1K527_GUITC9.870e-9874.00Histidine--tRNA ligase n=2 Tax=Guillardia theta (s... [more]
A0A7S2KC09_9STRA3.070e-9774.60Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S2ALP5_9STRA9.230e-9268.32Histidine--tRNA ligase n=1 Tax=Dictyocha speculum ... [more]
A0A6V2QQD5_9STRA9.320e-9271.35Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
F0YFS7_AURAN1.120e-9171.36Histidine--tRNA ligase n=1 Tax=Aureococcus anophag... [more]
A0A835Z4P1_9STRA9.920e-9175.86Histidine--tRNA ligase n=1 Tax=Tribonema minus Tax... [more]
A0A8J2SWN3_9STRA2.360e-9073.96Histidine--tRNA ligase n=1 Tax=Pelagomonas calceol... [more]
W7U324_9STRA1.570e-8971.14Histidine--tRNA ligase n=2 Tax=Nannochloropsis gad... [more]
A0A448ZRZ3_9STRA4.470e-8972.92Histidine--tRNA ligase n=1 Tax=Pseudo-nitzschia mu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47621contigH-elongata_contig47621:1332..3753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score322.4
Seed ortholog evalue1.5e-85
Seed eggNOG ortholog2880.D7G621
KEGG rclassRC00055,RC00523
KEGG koko:K01892,ko:K14442
KEGG ReactionR03655
KEGG Pathwayko00970,ko03018,map00970,map03018
KEGG ModuleM00359,M00360
GOsGO:0003674,GO:0003824,GO:0004812,GO:0004821,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006427,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Histidyl-trna synthetase
EggNOG OGsCOG0124@1,KOG1936@2759
EC3.6.4.13,6.1.1.21
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03019
Hectar predicted targeting categoryother localisation
Exons4
Model size618
Cds size618
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47621.11899.1prot_H-elongata_contig47621.11899.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47621 1332..3753 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930787.3192484-CDS-H-elongata_contig47621:1331..15301622930787.3192484-CDS-H-elongata_contig47621:1331..1530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47621 1332..1530 -
1691679570.12455-CDS-H-elongata_contig47621:1331..15301691679570.12455-CDS-H-elongata_contig47621:1331..1530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47621 1332..1530 -
1622930787.333648-CDS-H-elongata_contig47621:2070..21771622930787.333648-CDS-H-elongata_contig47621:2070..2177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47621 2071..2177 -
1691679570.1379786-CDS-H-elongata_contig47621:2070..21771691679570.1379786-CDS-H-elongata_contig47621:2070..2177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47621 2071..2177 -
1622930787.3488157-CDS-H-elongata_contig47621:2639..27901622930787.3488157-CDS-H-elongata_contig47621:2639..2790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47621 2640..2790 -
1691679570.1523345-CDS-H-elongata_contig47621:2639..27901691679570.1523345-CDS-H-elongata_contig47621:2639..2790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47621 2640..2790 -
1622930787.3621056-CDS-H-elongata_contig47621:3592..37531622930787.3621056-CDS-H-elongata_contig47621:3592..3753Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47621 3593..3753 -
1691679570.1607442-CDS-H-elongata_contig47621:3592..37531691679570.1607442-CDS-H-elongata_contig47621:3592..3753Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47621 3593..3753 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47621.11899.1

>prot_H-elongata_contig47621.11899.1 ID=prot_H-elongata_contig47621.11899.1|Name=mRNA_H-elongata_contig47621.11899.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=206bp
AGGAGGGRASAAVLQDAERRSNAGGSATPVEKLDLNPPKGTRDVFPENMR
LRNWLFGHWRHVALSFGFEEYDAPVLENEALYVRKSGEEVTQQLYCFEDK
GGRRVSLRPEMTPSLARMVMAKRKSLNLPVKWFSLPQCWRYERMTRGRRR
EHYQWNMDIWGVPGVEAEAELLGAMVTFFERVGLGAEDVGIKVSSSERLK
KPLLSL
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mRNA from alignment at H-elongata_contig47621:1332..3753-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47621.11899.1 ID=mRNA_H-elongata_contig47621.11899.1|Name=mRNA_H-elongata_contig47621.11899.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2422bp|location=Sequence derived from alignment at H-elongata_contig47621:1332..3753- (Himanthalia elongata Himel1 dioecious)
GCAGGAGGCGCCGGAGGGGGAAGGGCGAGCGCGGCAGTGTTACAGGACGC CGAGCGACGCAGTAACGCGGGCGGAAGCGCGACTCCGGTGGAAAAGCTTG ACCTAAATCCACCCAAGGGGACTAGGGATGTGTTCCCGGAGAATATGCGT CTTCGTAATTGGTGAGTTGTTTTTTACTCCTTTATCGTTTCTCTGGCAGG TCCATCTGCGATTATGGACGTGGAGTGGTATAGGTTCTGTTGGTAGGTTC CTGGCAGCTGTGACTTACGTAATCCAGCAGTTTCCGGATCGGGCGGAGCG TGCTCTTGTGGTGTATATCGACCATAGCAGCAGCAGCAGCAATGGCACCA TTGATTGTTGCTCTTCTTTCCCTCGTACGCAGAAGACATTTCTGTTGCGT TCGTATCGAGCTTGCAAAATACCTTGGCCGAGAGGCAGCAACGGCACGCT TATTATCAAGCGATATTCTTCACGCACTTCCAATCTAGAAATATCGTGAT GACAGACATACATTACCATGGCGTTCGCACGAACGGTCACTTTCTTGCTC CTAGCTAAGAGTATAGTCTATGTCGATATACATACATGTCGTCGATTCCC TATTGGAAGGACCAATGCGAGTAGCCTACTGTAGAATGACTATTAATAGC ATTGTAGGGCTGGATTGCGCGGTTATGACCTCTCCATTGGAAGGGCGAAA TCGAATAGCCTAGAATGACTTGCGTGACAAGGCCGGATTGCGAGGTTATG TACAATGTAATAGAAAAACACACAGACAAACATACATATATATATATACC CCTCATTTGTAAGATAGATCAATGTGAGTAGCCTAGAATGACTAGCATGG CAGGGCTGGATTGCACGGTTATGTGCAATTTAGTAAGTACACACACACCG ACACCGACACCGACACCGACTGCGATAGCGGCAACGACGGCGGAGTACGG GTGTCATGAACAGGCTCTTCGGACACTGGCGGCACGTGGCCCTCTCGTTT GGATTCGAGGAGTACGATGCGCCTGTGCTTGAGAACGAGGCGCTCTACGT CCGAAAATCTGGGGAGGAGGTGACCCAACAGCTCTACTGCTTCGAGGACA AGGGGGGGCGACGGGTGAGGCCAAGCTCCCACGGAAAAGGTGGAGAGGGT CGGTTTTCGTCGCCGTACGTGGAGGCGGTGTGGGATGGATGCCGTGTTAG CGGCCCCTTTTGGCCACCCAGGAGTGCCAGAACGCTGGATACAAATTCCC GTTGCCTAAGTATACCCTTTATTTAAAGAGCCGTAGGTCGTTTTGCCGAA GCCAACAATTGTAACATTCCTAGAAATTTCAAGGAGCGGGGAGGCAGGGT GAGGGAAGGAGGCTACGTGTGTTGTGATTAATCCGACCGTAATGTCTAGT TCGACCCCCCACTACGGCGAGTGTGCCTTCAGTCAACCGCATCTTGAGTA GCAACGAGTGAAACCGCTCTTCAGACTCGTTCTTGATGAAACCCCTAACT CCACCGCCCAAAGCTTTTTGGTGTCTGCTTCACACGGACATGCGTTTTTT CGATCGCCGCTGCCGCTGCCGCTCAGGTGAGTCTGCGGCCGGAGATGACG CCTTCTCTAGCGCGTATGGTTATGGCCAAGCGTAAAAGCCTCAACCTTCC CGTCAAATGGTTCAGCCTTCCGCAGTGCTGGAGGTGCGAGCAGAAGTCCC CCCCCACACACACCCCTTACCACTGAGGTGTCGAGACAGATAAACCACGT CACAATGCGCCACACGTTTGCGCGCAATTCGGGTTGTTTCAACAGCCGCC CCCAGGTGTACATGTTGAATATGTATCGCATCGCACGGGGGGCTATTTCT CTCTCGCCTGCAGCCGCGACGCCCCCCCCCCCCCCCCCCCGCGTCTTCTT TATGTGTAGGGTGCGGGGGGGGGGGGGGGGTGTGTTGTGTGTTTTAAGGG GGGAGGGTGGAGGGGGNNNNNNNNNNCCCCCCCCCCCCCCGTTTGTGTGT AAATAGAGCTAGCTGCGCTGTGGTGGTGGTGTTGATTATGTTTCGTCCAA GGGGGAAATCGTCCAAGGAGGAAGCACTCTGCCCCGCCCATTTTCGTCGT AGGCGTCAAGCCTAAGCGTGATCGTTAGAGAAGTGGAAGCAATCTCCGGA CAAATCGATCGAGAAAAAGAGGAACAGGGCTGTTCTGAATTTGGAGGCTA AGCCACCGAACGCTCCGTGACAGATACGAGCGCATGACAAGGGGAAGACG GAGGGAGCATTACCAGTGGAATATGGACATCTGGGGGGTGCCCGGGGTCG AGGCGGAGGCAGAGTTGCTGGGGGCCATGGTGACATTTTTCGAGCGGGTG GGGCTCGGGGCGGAGGATGTGGGGATCAAGGTAAGCAGCTCGGAGCGGTT GAAAAAGCCGCTTCTCTCTCTG
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Coding sequence (CDS) from alignment at H-elongata_contig47621:1332..3753-

>mRNA_H-elongata_contig47621.11899.1 ID=mRNA_H-elongata_contig47621.11899.1|Name=mRNA_H-elongata_contig47621.11899.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1236bp|location=Sequence derived from alignment at H-elongata_contig47621:1332..3753- (Himanthalia elongata Himel1 dioecious)
GCAGGAGGCGCCGGAGGGGGAAGGGCGAGCGCGGCAGTGTTACAGGACGC
CGAGCGACGCAGTAACGCGGGCGGAAGCGCGACTCCGGTGGAAAAGCTTG
ACCTAAATCCACCCAAGGGGACTAGGGATGTGTTCCCGGAGAATATGCGT
CTTCGTAATTGGCAGGAGGCGCCGGAGGGGGAAGGGCGAGCGCGGCAGTG
TTACAGGACGCCGAGCGACGCAGTAACGCGGGCGGAAGCGCGACTCCGGT
GGAAAAGCTTGACCTAAATCCACCCAAGGGGACTAGGGATGTGTTCCCGG
AGAATATGCGTCTTCGTAATTGGCTCTTCGGACACTGGCGGCACGTGGCC
CTCTCGTTTGGATTCGAGGAGTACGATGCGCCTGTGCTTGAGAACGAGGC
GCTCTACGTCCGAAAATCTGGGGAGGAGGTGACCCAACAGCTCTACTGCT
TCGAGGACAAGGGGGGGCGACGGGCTCTTCGGACACTGGCGGCACGTGGC
CCTCTCGTTTGGATTCGAGGAGTACGATGCGCCTGTGCTTGAGAACGAGG
CGCTCTACGTCCGAAAATCTGGGGAGGAGGTGACCCAACAGCTCTACTGC
TTCGAGGACAAGGGGGGGCGACGGGTGAGTCTGCGGCCGGAGATGACGCC
TTCTCTAGCGCGTATGGTTATGGCCAAGCGTAAAAGCCTCAACCTTCCCG
TCAAATGGTTCAGCCTTCCGCAGTGCTGGAGGTGAGTCTGCGGCCGGAGA
TGACGCCTTCTCTAGCGCGTATGGTTATGGCCAAGCGTAAAAGCCTCAAC
CTTCCCGTCAAATGGTTCAGCCTTCCGCAGTGCTGGAGATACGAGCGCAT
GACAAGGGGAAGACGGAGGGAGCATTACCAGTGGAATATGGACATCTGGG
GGGTGCCCGGGGTCGAGGCGGAGGCAGAGTTGCTGGGGGCCATGGTGACA
TTTTTCGAGCGGGTGGGGCTCGGGGCGGAGGATGTGGGGATCAAGGTAAG
CAGCTCGGAGCGGTTGAAAAAGCCGCTTCTCTCTCTGATACGAGCGCATG
ACAAGGGGAAGACGGAGGGAGCATTACCAGTGGAATATGGACATCTGGGG
GGTGCCCGGGGTCGAGGCGGAGGCAGAGTTGCTGGGGGCCATGGTGACAT
TTTTCGAGCGGGTGGGGCTCGGGGCGGAGGATGTGGGGATCAAGGTAAGC
AGCTCGGAGCGGTTGAAAAAGCCGCTTCTCTCTCTG
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