mRNA_H-elongata_contig47621.11899.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig47621.11899.1 vs. uniprot
Match: D7G621_ECTSI (Histidine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G621_ECTSI) HSP 1 Score: 321 bits (823), Expect = 1.430e-104 Identity = 156/177 (88.14%), Postives = 163/177 (92.09%), Query Frame = 1
Query: 88 VEKLDLNPPKGTRDVFPENMRLRNWLFGHWRHVALSFGFEEYDAPVLENEALYVRKSGEEVTQQLYCFEDKGGRRVSLRPEMTPSLARMVMAKRKSLNLPVKWFSLPQCWRYERMTRGRRREHYQWNMDIWGVPGVEAEAELLGAMVTFFERVGLGAEDVGIKVSSSERLKKPLLSL 618
VEKLDL PPKGTRDVFPE+MRLRNWLFGHWR VA SFGFEEYDAPVLE+E+LY RKSGEEVTQQLYCFEDKGGRRVSLRPEMTPSLARMVMAKRKSL LPVKWFS+PQCWRYERMTRGRRREHYQWNMDIWGV GV AEAELLGAMVTFFERVGL AEDVGI+V+S L + L SL
Sbjct: 136 VEKLDLKPPKGTRDVFPEDMRLRNWLFGHWRGVASSFGFEEYDAPVLESESLYTRKSGEEVTQQLYCFEDKGGRRVSLRPEMTPSLARMVMAKRKSLTLPVKWFSIPQCWRYERMTRGRRREHYQWNMDIWGVSGVAAEAELLGAMVTFFERVGLRAEDVGIRVNSRGVLTEVLHSL 312
BLAST of mRNA_H-elongata_contig47621.11899.1 vs. uniprot
Match: L1K527_GUITC (Histidine--tRNA ligase n=2 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K527_GUITC) HSP 1 Score: 301 bits (772), Expect = 9.870e-98 Identity = 148/200 (74.00%), Postives = 168/200 (84.00%), Query Frame = 1
Query: 19 GRASAAVLQDAERRSNAGGSATPVEKLDLNPPKGTRDVFPENMRLRNWLFGHWRHVALSFGFEEYDAPVLENEALYVRKSGEEVTQQLYCFEDKGGRRVSLRPEMTPSLARMVMAKRKSLNLPVKWFSLPQCWRYERMTRGRRREHYQWNMDIWGVPGVEAEAELLGAMVTFFERVGLGAEDVGIKVSSSERLKKPLLSL 618
GRASAAV Q E+ S EKLDL PPKGTRD +PE+MR+RNWLFGHW+ VA GFEEYDAPVLE+E LY+RK+GEEVTQQLY FEDKG RRVSLRPEMTPSLARMVMA+ KSL LPVKWFS+PQCWRYERMTRGRRREHYQWNMDIWGVPG+EAEAELL A+VTFF+RVG+ ++DVGIKV+S L + L ++
Sbjct: 57 GRASAAVAQSKEK------STGKKEKLDLKPPKGTRDFYPEDMRMRNWLFGHWKDVARLHGFEEYDAPVLESEELYIRKAGEEVTQQLYNFEDKGERRVSLRPEMTPSLARMVMARGKSLTLPVKWFSIPQCWRYERMTRGRRREHYQWNMDIWGVPGIEAEAELLSAIVTFFKRVGITSQDVGIKVNSRAVLSEVLTAM 250
BLAST of mRNA_H-elongata_contig47621.11899.1 vs. uniprot
Match: A0A7S2KC09_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KC09_9STRA) HSP 1 Score: 291 bits (744), Expect = 3.070e-97 Identity = 141/189 (74.60%), Postives = 160/189 (84.66%), Query Frame = 1
Query: 13 GGGRASAAVLQDAE--RRSNAGGSATPVEKLDLNPPKGTRDVFPENMRLRNWLFGHWRHVALSFGFEEYDAPVLENEALYVRKSGEEVTQQLYCFEDKGGRRVSLRPEMTPSLARMVMAKRKSLNLPVKWFSLPQCWRYERMTRGRRREHYQWNMDIWGVPGVEAEAELLGAMVTFFERVGLGAEDVGI 573
GGGR S+AV QD E +++ T E+LD NPPKGTRD FPE++R+RNWLF WR VA +FGF EYD+PVLENE+LY RK+GEEVTQQLY FEDKGGRRVSLRPEMTPSLARMVM+K+ L +P+KWFSLPQCWRYERMTRGRRREHYQWNMD+WGVPG+EAEAELL AMVTFFE VGL + DVGI
Sbjct: 44 GGGRVSSAV-QDKEVLDKTSKSSGKTKRERLDTNPPKGTRDFFPEDLRMRNWLFTEWREVAATFGFSEYDSPVLENESLYTRKAGEEVTQQLYSFEDKGGRRVSLRPEMTPSLARMVMSKKGGLPMPLKWFSLPQCWRYERMTRGRRREHYQWNMDVWGVPGIEAEAELLSAMVTFFENVGLNSRDVGI 231
BLAST of mRNA_H-elongata_contig47621.11899.1 vs. uniprot
Match: A0A7S2ALP5_9STRA (Histidine--tRNA ligase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ALP5_9STRA) HSP 1 Score: 286 bits (732), Expect = 9.230e-92 Identity = 138/202 (68.32%), Postives = 166/202 (82.18%), Query Frame = 1
Query: 13 GGGRASAAVLQDAERRSNAGGSATPVEKLDLNPPKGTRDVFPENMRLRNWLFGHWRHVALSFGFEEYDAPVLENEALYVRKSGEEVTQQLYCFEDKGGRRVSLRPEMTPSLARMVMAKRKSLNLPVKWFSLPQCWRYERMTRGRRREHYQWNMDIWGVPGVEAEAELLGAMVTFFERVGLGAEDVGIKVSSSERLKKPLLSL 618
GGGR SAAV QD ++ + EKLDL PP+GTRD +PE+MRL+ WLF HW+ VA GF EYD+PVLENEALY+RK+GEEV+QQLY FEDKGGR VSLRPEMTPSLARMVMAK+++L++P+KW+S+PQCWRYERMTRGRRREHYQWNMDIWGV G AEAELLG +V FF+RVGL A+D+G+KV+S + L + L L
Sbjct: 49 GGGRQSAAVEQDKSKKPSTS------EKLDLAPPRGTRDFYPEDMRLQRWLFSHWQEVARLHGFSEYDSPVLENEALYIRKAGEEVSQQLYNFEDKGGRAVSLRPEMTPSLARMVMAKKRTLSMPLKWYSIPQCWRYERMTRGRRREHYQWNMDIWGVAGPTAEAELLGCIVAFFQRVGLTADDIGVKVNSRQVLSELLNKL 244
BLAST of mRNA_H-elongata_contig47621.11899.1 vs. uniprot
Match: A0A6V2QQD5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2QQD5_9STRA) HSP 1 Score: 279 bits (713), Expect = 9.320e-92 Identity = 137/192 (71.35%), Postives = 158/192 (82.29%), Query Frame = 1
Query: 13 GGGRASAAVLQ-DAERRSNAGGSATPVEKLDLNPPKGTRDVFPENMRLRNWLFGHWRHVALSFGFEEYDAPVLENEALYVRKSGEEVTQQLYCFEDKGGRRVSLRPEMTPSLARMVMAKRKSLNLPVKWFSLPQCWRYERMTRGRRREHYQWNMDIWGVPGVEAEAELLGAMVTFFERVGLGAEDVGIKVSS 585
GGGR SA V + +++ S ++LD NPPKGTRD +PE+MRLR WLF HWR VA ++GF EYDAPVLE+EALY RK+GEEVTQQLY F DKG R V+LRPEMTPSLARMVMAK+ LNLP+KW S+PQCWRYERMTRGRRREH+QWNMD+WGV GVEAEAELL AMVTFFE VGL ++DVGIKV+S
Sbjct: 54 GGGRVSAGVKDTNILDKTDTSKSMKKQKQLDTNPPKGTRDFYPEDMRLRTWLFDHWRSVASTYGFSEYDAPVLESEALYTRKAGEEVTQQLYNFMDKGDRAVALRPEMTPSLARMVMAKKGGLNLPLKWHSIPQCWRYERMTRGRRREHFQWNMDVWGVQGVEAEAELLSAMVTFFENVGLTSDDVGIKVNS 245
BLAST of mRNA_H-elongata_contig47621.11899.1 vs. uniprot
Match: F0YFS7_AURAN (Histidine--tRNA ligase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFS7_AURAN) HSP 1 Score: 285 bits (730), Expect = 1.120e-91 Identity = 142/199 (71.36%), Postives = 164/199 (82.41%), Query Frame = 1
Query: 19 GRASAAVLQDAERRSNAGGSATPVEK--LDLNPPKGTRDVFPENMRLRNWLFGHWRHVALSFGFEEYDAPVLENEALYVRKSGEEVTQQLYCFEDKGGRRVSLRPEMTPSLARMVMAKRKSLNLPVKWFSLPQCWRYERMTRGRRREHYQWNMDIWGVPGVEAEAELLGAMVTFFERVGLGAEDVGIKVSSSERLKKPL 609
GRASAAV Q + ATP + LDLNPP+GTRD +PE +R+RNWLFG WR A + GFEEYD+PVLE+EALYVRK+GEEVTQQLY FEDKGGRRV+LRPEMTPSLARMVMA++ +L LPVKWFS+PQCWRYER TRGRRREHYQWNMDIWGVPGV AEAE+L A+V FFERVG+ + DVGIK++S E L + L
Sbjct: 24 GRASAAVSQKEQA------PATPETQAALDLNPPRGTRDFYPEELRVRNWLFGQWRATAAAHGFEEYDSPVLESEALYVRKAGEEVTQQLYNFEDKGGRRVALRPEMTPSLARMVMARKNALPLPVKWFSVPQCWRYERTTRGRRREHYQWNMDIWGVPGVTAEAEVLAAVVGFFERVGIDSADVGIKINSREVLAELL 216
BLAST of mRNA_H-elongata_contig47621.11899.1 vs. uniprot
Match: A0A835Z4P1_9STRA (Histidine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4P1_9STRA) HSP 1 Score: 281 bits (719), Expect = 9.920e-91 Identity = 132/174 (75.86%), Postives = 151/174 (86.78%), Query Frame = 1
Query: 97 LDLNPPKGTRDVFPENMRLRNWLFGHWRHVALSFGFEEYDAPVLENEALYVRKSGEEVTQQLYCFEDKGGRRVSLRPEMTPSLARMVMAKRKSLNLPVKWFSLPQCWRYERMTRGRRREHYQWNMDIWGVPGVEAEAELLGAMVTFFERVGLGAEDVGIKVSSSERLKKPLLSL 618
+D NP KGTRD++PE+MRLR WLFGHWR VA +GFEEYDAPVLE+EALYVRKSGEEVTQQLY FEDKG RRV+LRPEMTPSLARM+MA+R + LPVKWFSLPQCWRYERMTRGRRREHYQWNMDIWGV GVEAEAELL A+V+FF +G+ + DVG+KV+S L + + SL
Sbjct: 1 MDANPVKGTRDMYPEDMRLRTWLFGHWRKVAEQYGFEEYDAPVLESEALYVRKSGEEVTQQLYNFEDKGERRVALRPEMTPSLARMIMARRNGVTLPVKWFSLPQCWRYERMTRGRRREHYQWNMDIWGVQGVEAEAELLAAVVSFFTNIGITSADVGMKVNSRAALGEIMTSL 174
BLAST of mRNA_H-elongata_contig47621.11899.1 vs. uniprot
Match: A0A8J2SWN3_9STRA (Histidine--tRNA ligase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SWN3_9STRA) HSP 1 Score: 282 bits (722), Expect = 2.360e-90 Identity = 142/192 (73.96%), Postives = 160/192 (83.33%), Query Frame = 1
Query: 10 AGGGRASAAVLQDAERRSNAGGSATPVEKLDLNPPKGTRDVFPENMRLRNWLFGHWRHVALSFGFEEYDAPVLENEALYVRKSGEEVTQQLYCFEDKGGRRVSLRPEMTPSLARMVMAKRKSLNLPVKWFSLPQCWRYERMTRGRRREHYQWNMDIWGVPGVEAEAELLGAMVTFFERVGLGAEDVGIKVSS 585
AGGGRASAAV Q R ++ EKLDL PP+GTRDV+PE+MR+RNWLFG WR A +FGFEEYDAPVLENEALYVRK+GEEVTQQLY FEDKGGRRV+LRPEMTPSLARMVMA++ + P+KWFS+PQCWRYER TRGRRREHYQWNMDIWGV G AEAE L AMV+F E VGL ++DVGIKV+S
Sbjct: 32 AGGGRASAAVEQKKARPAS-------TEKLDLAPPRGTRDVYPEDMRVRNWLFGKWRSTAKAFGFEEYDAPVLENEALYVRKAGEEVTQQLYNFEDKGGRRVALRPEMTPSLARMVMARKPTP--PLKWFSIPQCWRYERTTRGRRREHYQWNMDIWGVDGAAAEAEALAAMVSFMESVGLTSDDVGIKVNS 214
BLAST of mRNA_H-elongata_contig47621.11899.1 vs. uniprot
Match: W7U324_9STRA (Histidine--tRNA ligase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U324_9STRA) HSP 1 Score: 282 bits (721), Expect = 1.570e-89 Identity = 143/201 (71.14%), Postives = 159/201 (79.10%), Query Frame = 1
Query: 16 GGRASAAVLQDAERRSNAGGSATPVEKLDLNPPKGTRDVFPENMRLRNWLFGHWRHVALSFGFEEYDAPVLENEALYVRKSGEEVTQQLYCFEDKGGRRVSLRPEMTPSLARMVMAKRKSLNLPVKWFSLPQCWRYERMTRGRRREHYQWNMDIWGVPGVEAEAELLGAMVTFFERVGLGAEDVGIKVSSSERLKKPLLSL 618
G R SAAV QD + KLDLNPP+GTRD +PE+MR R+WLF WR VA FEEYDAPVLE+E L+VRK+GEEVT+QLY FEDKGGRRV+LRPEMTPSLARMVMAKR L +PVKWFS PQCWRYERMTRGRRREHYQWNMD+WGV GVEAEAELL A+ TFF+RVGL AEDVGIKVSS L + L +L
Sbjct: 86 GSRGSAAVAQDLKNSRET--QKERQGKLDLNPPRGTRDFYPEDMRTRSWLFELWRQVARDHAFEEYDAPVLESEDLFVRKAGEEVTEQLYNFEDKGGRRVALRPEMTPSLARMVMAKRNGLVMPVKWFSFPQCWRYERMTRGRRREHYQWNMDVWGVSGVEAEAELLSAITTFFKRVGLTAEDVGIKVSSRGVLAEVLAAL 284
BLAST of mRNA_H-elongata_contig47621.11899.1 vs. uniprot
Match: A0A448ZRZ3_9STRA (Histidine--tRNA ligase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZRZ3_9STRA) HSP 1 Score: 280 bits (715), Expect = 4.470e-89 Identity = 140/192 (72.92%), Postives = 156/192 (81.25%), Query Frame = 1
Query: 16 GGRASAAVLQDAERRSNAGGSATPVE--KLDLNPPKGTRDVFPENMRLRNWLFGHWRHVALSFGFEEYDAPVLENEALYVRKSGEEVTQQLYCFEDKGGRRVSLRPEMTPSLARMVMAKRKSLNLPVKWFSLPQCWRYERMTRGRRREHYQWNMDIWGVPGVEAEAELLGAMVTFFERVGLGAEDVGIKVSS 585
GGR SA+V QD GG KLD NPPKGTRD +PE+MRLRNWLF WR VA +GF EYDAPVLE+E+LY RK+GEEVTQQLY FEDKG RRV+LRPEMTPSLARMVMAK+ L LP+KWFS+PQCWRYERMTRGRRREH+QWNMDIWG+ G EA+AELL AMVTFFE VGL +EDVGIKV+S
Sbjct: 59 GGRVSASV-QDKNVXEKTGGKKKKKXQPKLDTNPPKGTRDFYPEDMRLRNWLFDQWRDVAKQYGFSEYDAPVLESESLYTRKAGEEVTQQLYNFEDKGERRVALRPEMTPSLARMVMAKKGGLPLPLKWFSIPQCWRYERMTRGRRREHFQWNMDIWGIAGEEADAELLSAMVTFFESVGLTSEDVGIKVNS 249 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47621.11899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig47621.11899.1 >prot_H-elongata_contig47621.11899.1 ID=prot_H-elongata_contig47621.11899.1|Name=mRNA_H-elongata_contig47621.11899.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=206bp AGGAGGGRASAAVLQDAERRSNAGGSATPVEKLDLNPPKGTRDVFPENMRback to top mRNA from alignment at H-elongata_contig47621:1332..3753- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig47621.11899.1 ID=mRNA_H-elongata_contig47621.11899.1|Name=mRNA_H-elongata_contig47621.11899.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2422bp|location=Sequence derived from alignment at H-elongata_contig47621:1332..3753- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig47621:1332..3753- >mRNA_H-elongata_contig47621.11899.1 ID=mRNA_H-elongata_contig47621.11899.1|Name=mRNA_H-elongata_contig47621.11899.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1236bp|location=Sequence derived from alignment at H-elongata_contig47621:1332..3753- (Himanthalia elongata Himel1 dioecious)back to top |