mRNA_H-elongata_contig4761.11897.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4761.11897.1
Unique NamemRNA_H-elongata_contig4761.11897.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig4761.11897.1 vs. uniprot
Match: A0A6H5JMR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMR6_9PHAE)

HSP 1 Score: 253 bits (646), Expect = 8.000e-84
Identity = 128/171 (74.85%), Postives = 147/171 (85.96%), Query Frame = 1
Query:    1 QALTAYACAASGFTREEGLAVDKV--NLYERLGREVIEEISTAFYGRVFDDEEWFRSIFSATTKAEAIRNQSDFLVERLGGPKVYTQRKG-HFRLITRHSPYDLNPKSARRWLEHMKAALDSLSGVDKDSRDLLMAFFSHMAFFLTAGKDMMNPSNLVDYHNKMAESSGKV 504
            QALTA A A SG TREE +A+DKV  +L+ERLG++ IE IS  FY RVFDDEEWFRSIFSA+TK EA++NQ+DFLVERLGGPK+YT+RKG H+RLI RHSPYDLNPKSA RWLEHM+AA+D+  GVD +S+ LLMAFFSHMAFFL AGKDM NPSNLVDYHNKMAES  K+
Sbjct:    2 QALTACAFAGSGVTREESVALDKVKPSLFERLGQDTIEGISALFYDRVFDDEEWFRSIFSASTKREAVQNQADFLVERLGGPKLYTKRKGKHYRLIHRHSPYDLNPKSAARWLEHMEAAIDASGGVDAESKRLLMAFFSHMAFFLVAGKDMSNPSNLVDYHNKMAESCPKI 172          
BLAST of mRNA_H-elongata_contig4761.11897.1 vs. uniprot
Match: A0A0U9HKG8_KLENI (Hemoglobin-like protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HKG8_KLENI)

HSP 1 Score: 168 bits (426), Expect = 1.940e-50
Identity = 83/161 (51.55%), Postives = 111/161 (68.94%), Query Frame = 1
Query:    1 QALTAYACAASGFTREEGLAVDKVNLYERLGREVIEEISTAFYGRVFDDEE-WFRSIFSATTKAEAIRNQSDFLVERLGGPKVYTQRKGHFRLITRHSPYDLNPKSARRWLEHMKAALDSLSGVDKDSRDLLMAFFSHMAFFLTAGKDMMNPSNLVDYHNK 480
            Q+L   A   SG   +E   VD VNLYERLG +V  ++ST FY RV+DD+E WFR IF+ +T+  A +NQ +F ++RLGGP +Y+QRKGH  LI RH PY +  ++A+RWLEHM  ALD  +G+D+DSR  L  FF H A+FL AGK+++N + LV Y  K
Sbjct:    2 QSLQEQASQKSGVPLDEAFQVDAVNLYERLGHQVFIDLSTNFYTRVYDDKETWFRDIFANSTREHATQNQYEFFIQRLGGPPLYSQRKGHPALIGRHGPYAVTERAAQRWLEHMDEALDETAGIDEDSRQRLRNFFRHTAYFLVAGKELVNRNRLVGYGGK 162          
BLAST of mRNA_H-elongata_contig4761.11897.1 vs. uniprot
Match: D8T7E2_SELML (Uncharacterized protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8T7E2_SELML)

HSP 1 Score: 161 bits (407), Expect = 1.050e-47
Identity = 75/150 (50.00%), Postives = 109/150 (72.67%), Query Frame = 1
Query:    1 QALTAYACAASGFTREEGLAVDKVNLYERLGREVIEEISTAFYGRVF-DDEEWFRSIFSATTKAEAIRNQSDFLVERLGGPKVYTQRKGHFRLITRHSPYDLNPKSARRWLEHMKAALDSLSGVDKDSRDLLMAFFSHMAFFLTAGKDMM 447
            Q+L   A   SG ++++   +D++NLY++LG E   ++ST FY RV+ DDEEWFRSIF+ ++K  AI+NQ +F ++R+GGP +Y++RKGH  LI RH PY +  ++A RW+EHM AALDS+  +D DS+  ++ FF H AFFL AGK+MM
Sbjct:    2 QSLQDRASELSGVSQDDAFEIDEINLYKKLGHETFVKLSTNFYNRVYADDEEWFRSIFANSSKDAAIQNQYEFFIQRMGGPPLYSRRKGHPALIGRHGPYPVTERAAERWIEHMTAALDSVEEIDADSKKRMLKFFRHTAFFLVAGKEMM 151          
BLAST of mRNA_H-elongata_contig4761.11897.1 vs. uniprot
Match: UPI001FB16E89 (two-on-two hemoglobin-3 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB16E89)

HSP 1 Score: 160 bits (405), Expect = 3.370e-47
Identity = 75/155 (48.39%), Postives = 110/155 (70.97%), Query Frame = 1
Query:   31 SGFTREEGLAVDKVNLYERLGREVIEEISTAFYGRVFDDE-EWFRSIFSATTKAEAIRNQSDFLVERLGGPKVYTQRKGHFRLITRHSPYDLNPKSARRWLEHMKAALDSLSGVDKDSRDLLMAFFSHMAFFLTAGKDMMNPSNLVDYHNKMAES 492
            SG  + +  A+D++NL+E+LG++    +ST FY RV+DDE EWFRSIF+ ++K +AI+NQ +F ++R+GGP +Y++RKGH  LI RH P+ +  ++A RWL+HM+ ALDS + +D DS+  +M FF H AFFL AG +M NP+  V    K A S
Sbjct:   12 SGVDQTDAFAIDEINLFEKLGKQTFINLSTHFYNRVYDDEQEWFRSIFANSSKEDAIQNQYEFFIQRMGGPPLYSERKGHPALIGRHRPFPVTHEAAERWLQHMQQALDSTADIDSDSKTKMMNFFRHTAFFLVAGNEMKNPNQGVPPPCKHATS 166          
BLAST of mRNA_H-elongata_contig4761.11897.1 vs. uniprot
Match: A0A7S1GAZ3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GAZ3_9STRA)

HSP 1 Score: 161 bits (407), Expect = 9.530e-47
Identity = 81/167 (48.50%), Postives = 111/167 (66.47%), Query Frame = 1
Query:    1 QALTAYACAASGFTREEGLAVDKVNLYERLGREVIEEISTAFYGRVFDD-EEWFRSIFSATTKAEAIRNQSDFLVERLGGPKVYTQRKGHFRLITRHSPYDLNPKSARRWLEHMKAALDSLSGVDKDSRDLLMAFFSHMAFFLTAGKDMMNPSNLVDYHNKMAESSG 498
            QAL   A   +G T EE  A+D+VN++ERLG++V  ++ST FY RV+DD E WFR IF+ + K +AI+NQ +F ++R+GGP +Y+ RKGH  LI RH  +D++P +ARRWL HM+AALD+   +D DSR  + AF  H A+FL AG+DMM            AE  G
Sbjct:   63 QALQEAASRNAGVTSEEAFALDEVNIFERLGKDVFVKLSTEFYNRVYDDGEAWFRDIFAGSKKEDAIQNQYEFFIQRMGGPPLYSTRKGHPALIGRHRTFDVSPAAARRWLTHMEAALDATPEIDGDSRKRMWAFLRHTAWFLVAGQDMMKAREAEAAAAAAAEDGG 229          
BLAST of mRNA_H-elongata_contig4761.11897.1 vs. uniprot
Match: A9S385_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9S385_PHYPA)

HSP 1 Score: 158 bits (400), Expect = 1.210e-46
Identity = 73/146 (50.00%), Postives = 105/146 (71.92%), Query Frame = 1
Query:   31 SGFTREEGLAVDKVNLYERLGREVIEEISTAFYGRVFDDE-EWFRSIFSATTKAEAIRNQSDFLVERLGGPKVYTQRKGHFRLITRHSPYDLNPKSARRWLEHMKAALDSLSGVDKDSRDLLMAFFSHMAFFLTAGKDMMNPSNLV 465
            SG  +++   +D+VNL++RLG +   ++ST FY RV+DD+ EWFR IFS++TK +AIRNQ +F V+R+GGP +Y+QRKGH  LI RH P+  + + A RWLEHM+AAL+    +D DS+  +  FF H A+FL AGK++MN  N +
Sbjct:   11 SGVKQDDAFKIDEVNLFQRLGLDTFIKLSTNFYARVYDDDQEWFRKIFSSSTKEDAIRNQYEFFVQRMGGPPLYSQRKGHPALIGRHGPFTFDEQGAVRWLEHMQAALNDTPEIDADSKKRMFDFFKHTAYFLVAGKELMNRRNAM 156          
BLAST of mRNA_H-elongata_contig4761.11897.1 vs. uniprot
Match: A9TSV7_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9TSV7_PHYPA)

HSP 1 Score: 156 bits (395), Expect = 1.070e-45
Identity = 77/169 (45.56%), Postives = 105/169 (62.13%), Query Frame = 1
Query:    1 QALTAYACAASGFTREEGLAVDKVNLYERLGREVIEEISTAFYGRVF-DDEEWFRSIFSATTKAEAIRNQSDFLVERLGGPKVYTQRKGHFRLITRHSPYDLNPKSARRWLEHMKAALDSLSGVDKDSRDLLMAFFSHMAFFLTAGKDMMNPSNLVDYHNKMAESSGKV 504
            QAL   A   SG   E+  A+D VNLYE+LG +   ++ST FY  V+ DD++WFRSIF+ +TK +AI+NQ +F ++R+GGP +Y  RKG   LI RH PY +  ++A RWL HMK ALD    +D DS+  +  FF H AFFL AGK++ N   LV  +       G+ 
Sbjct:    2 QALNRQASCMSGVAHEDATAIDNVNLYEKLGFDTFVKLSTNFYNEVYNDDQQWFRSIFANSTKDDAIQNQYEFFIQRMGGPPLYAHRKGSTALIARHGPYPITERAAARWLFHMKTALDKSPEIDLDSKTRMFNFFKHTAFFLVAGKELTNHHRLVGNYGVGGRHMGRA 170          
BLAST of mRNA_H-elongata_contig4761.11897.1 vs. uniprot
Match: H6U807_WOLAU (Truncated hemoglobin n=1 Tax=Wolffia australiana TaxID=161112 RepID=H6U807_WOLAU)

HSP 1 Score: 155 bits (391), Expect = 2.730e-45
Identity = 76/154 (49.35%), Postives = 104/154 (67.53%), Query Frame = 1
Query:    1 QALTAYACAASGFTREEGLAVDKVNLYERLGREVIEEISTAFYGRVFDDEE-WFRSIFSATTKAEAIRNQSDFLVERLGGPKVYTQRKGHFRLITRHSPYDLNPKSARRWLEHMKAALDSLSGVDKDSRDLLMAFFSHMAFFLTAGKDMMNPSN 459
            Q+L   A   SG    +  ++D+ NL+ RLG +   ++STAFY RVF DE+ WFRSIF  + K +AI+NQ +F V+R+GGP +Y+QRKGH  LI RH PY +  ++A RWL HM+ ALD+  G+D DSR  +M FF H AFFL AG  + NP++
Sbjct:    2 QSLQQKAAEWSGVASADAFSIDETNLFHRLGLQTFVDLSTAFYDRVFADEQLWFRSIFGESKKEDAIQNQYEFFVQRMGGPPLYSQRKGHPALIGRHRPYPVTHQAAERWLHHMEQALDATPGIDPDSRIKMMNFFRHTAFFLVAGDKLKNPAD 155          
BLAST of mRNA_H-elongata_contig4761.11897.1 vs. uniprot
Match: A0A3Q7HPE4_SOLLC (Uncharacterized protein n=5 Tax=Solanum TaxID=4107 RepID=A0A3Q7HPE4_SOLLC)

HSP 1 Score: 155 bits (391), Expect = 3.830e-45
Identity = 73/141 (51.77%), Postives = 102/141 (72.34%), Query Frame = 1
Query:   31 SGFTREEGLAVDKVNLYERLGREVIEEISTAFYGRVFDDEE-WFRSIFSATTKAEAIRNQSDFLVERLGGPKVYTQRKGHFRLITRHSPYDLNPKSARRWLEHMKAALDSLSGVDKDSRDLLMAFFSHMAFFLTAGKDMMN 450
            SG   ++ +AVD++NL+++LG +    +ST FY RV+DDEE WFRSIFS + K EAIRNQ +F V+R+GGP +Y+QRKGH  LI RH  + +  K+A RWL HM+ ALDS + +D+DS+  ++ FF H AFFL AG ++ N
Sbjct:   12 SGVDPKDAVAVDEINLFQKLGLQTFINLSTNFYNRVYDDEEEWFRSIFSNSNKEEAIRNQYEFFVQRMGGPNLYSQRKGHTALIGRHRTFPVTHKAAERWLHHMQQALDSAADIDEDSKTKMINFFRHTAFFLVAGVELKN 152          
BLAST of mRNA_H-elongata_contig4761.11897.1 vs. uniprot
Match: A0A059CT31_EUCGR (Uncharacterized protein n=5 Tax=Myrtoideae TaxID=1699513 RepID=A0A059CT31_EUCGR)

HSP 1 Score: 154 bits (390), Expect = 5.950e-45
Identity = 77/156 (49.36%), Postives = 106/156 (67.95%), Query Frame = 1
Query:    1 QALTAYACAASGFTREEGLAVDKVNLYERLGREVIEEISTAFYGRVFDDEE-WFRSIFSATTKAEAIRNQSDFLVERLGGPKVYTQRKGHFRLITRHSPYDLNPKSARRWLEHMKAALDSLSGVDKDSRDLLMAFFSHMAFFLTAGKDMMNPSNLV 465
            Q+L   A   SG  +E+  A+D  NL+E+LG      +ST FY RV+DDEE WFRSIF+ + K EAI+NQ +F V+R+GGP +Y+QRKGH  LI RH P+ +  ++A RWL HM+ ALDS++ +D DS+  +M FF H AFFL AG ++ N +  V
Sbjct:    2 QSLQEKAAQWSGVDQEDAFAIDGTNLFEKLGLPTFVNLSTNFYTRVYDDEEEWFRSIFANSKKEEAIQNQYEFFVQRMGGPPLYSQRKGHPALIGRHRPFPVTRQAAERWLHHMQQALDSVAEIDDDSKTKMMNFFRHTAFFLVAGDELKNQNQQV 157          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4761.11897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMR6_9PHAE8.000e-8474.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0U9HKG8_KLENI1.940e-5051.55Hemoglobin-like protein n=1 Tax=Klebsormidium nite... [more]
D8T7E2_SELML1.050e-4750.00Uncharacterized protein n=2 Tax=Selaginella moelle... [more]
UPI001FB16E893.370e-4748.39two-on-two hemoglobin-3 n=1 Tax=Impatiens glanduli... [more]
A0A7S1GAZ3_9STRA9.530e-4748.50Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A9S385_PHYPA1.210e-4650.00Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A9TSV7_PHYPA1.070e-4545.56Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
H6U807_WOLAU2.730e-4549.35Truncated hemoglobin n=1 Tax=Wolffia australiana T... [more]
A0A3Q7HPE4_SOLLC3.830e-4551.77Uncharacterized protein n=5 Tax=Solanum TaxID=4107... [more]
A0A059CT31_EUCGR5.950e-4549.36Uncharacterized protein n=5 Tax=Myrtoideae TaxID=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4761contigH-elongata_contig4761:1147..2544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score163.3
Seed ortholog evalue9.9e-38
Seed eggNOG ortholog88036.EFJ07410
Preferred nameGLB3
GOsGO:0001666,GO:0003674,GO:0005344,GO:0006810,GO:0006950,GO:0008150,GO:0009628,GO:0009719,GO:0009725,GO:0009733,GO:0010033,GO:0015669,GO:0015671,GO:0015893,GO:0036293,GO:0042221,GO:0042493,GO:0050896,GO:0051179,GO:0051234,GO:0070482,GO:0140104
EggNOG free text desc.Two-on-two hemoglobin-3
EggNOG OGs2QRXE@2759,37PXR@33090,3GCEI@35493,COG2346@1
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_003110.1
Exons4
Model size510
Cds size510
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4761.11897.1prot_H-elongata_contig4761.11897.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4761 1147..2544 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930786.9897285-CDS-H-elongata_contig4761:1146..13231622930786.9897285-CDS-H-elongata_contig4761:1146..1323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4761 1147..1323 -
1691679569.9851701-CDS-H-elongata_contig4761:1146..13231691679569.9851701-CDS-H-elongata_contig4761:1146..1323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4761 1147..1323 -
1622930787.0094838-CDS-H-elongata_contig4761:1545..16711622930787.0094838-CDS-H-elongata_contig4761:1545..1671Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4761 1546..1671 -
1691679569.999126-CDS-H-elongata_contig4761:1545..16711691679569.999126-CDS-H-elongata_contig4761:1545..1671Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4761 1546..1671 -
1622930787.0247335-CDS-H-elongata_contig4761:1975..20481622930787.0247335-CDS-H-elongata_contig4761:1975..2048Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4761 1976..2048 -
1691679570.008537-CDS-H-elongata_contig4761:1975..20481691679570.008537-CDS-H-elongata_contig4761:1975..2048Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4761 1976..2048 -
1622930787.0399375-CDS-H-elongata_contig4761:2410..25441622930787.0399375-CDS-H-elongata_contig4761:2410..2544Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4761 2411..2544 -
1691679570.0174425-CDS-H-elongata_contig4761:2410..25441691679570.0174425-CDS-H-elongata_contig4761:2410..2544Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4761 2411..2544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4761.11897.1

>prot_H-elongata_contig4761.11897.1 ID=prot_H-elongata_contig4761.11897.1|Name=mRNA_H-elongata_contig4761.11897.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp
QALTAYACAASGFTREEGLAVDKVNLYERLGREVIEEISTAFYGRVFDDE
EWFRSIFSATTKAEAIRNQSDFLVERLGGPKVYTQRKGHFRLITRHSPYD
LNPKSARRWLEHMKAALDSLSGVDKDSRDLLMAFFSHMAFFLTAGKDMMN
PSNLVDYHNKMAESSGKVP*
back to top

mRNA from alignment at H-elongata_contig4761:1147..2544-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4761.11897.1 ID=mRNA_H-elongata_contig4761.11897.1|Name=mRNA_H-elongata_contig4761.11897.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1398bp|location=Sequence derived from alignment at H-elongata_contig4761:1147..2544- (Himanthalia elongata Himel1 dioecious)
CAGGCTCTCACTGCTTACGCTTGTGCGGCAAGTGGTTTCACACGAGAAGA GGGCTTGGCCGTGGACAAGGTCAACCTCTACGAGCGCCTCGGCCGCGAAG TGATCGAGGAAATTTCGACAGCGTTTTACGGCAGGTGTGCATCTGTAAGT GGGCCTTTGGCAGGACTGTCGAGCCGGCCTAATTATTTCGCGGGGTATAG GTTATCAAGACTTGACAACGTAGGATGTTGGCCACTTCGAGGTTCCCAAT AATGTCGACTCTTGCGCACTCTCCGGACACACGCCATCACAGAATATCGC GGAATCAACGGAAGTGTAATTACCAGGTAACTCTTATTGTATCCCACATC ACGCAGTTAGATAGCAATGGCTGTAAATACTTCAGTTAGTTTGTACTGTA CTTCGATATTTTCCGCTCAAGCAGCGCTCCAACTCTGAACTGGAAGTGAA ATTTGTTTGCGCTTTGCTTGGCCTGGTGTGATTTGTTTAACAACAGGGTG TTTGACGACGAGGAATGGTTCAGGTCGATATTTTCCGCGACAACGAAGGC TGAAGCGATTCGAAATCAGGTGCGGAGCGACTCGAGTACCTGCTCTTGAG GTTTTCATGTTGTAAGATTATCTAACGAGCGTGATCTCGCGCTTCAACCA AAAACGTTTTCGTGGTGCGCTGCAGCTAGACCTAGTTACCACTCGTACTT GTGTTAGTTGTGCCTTAGACCGCCGATTTTGTCGGACACCACAACACCAC AGTGCACCACCTCCTTTTGTAGCGGGTCGCATTTCCTTCTTTCCTTTTGT AGCGCGTTGACACCACGCGGGAACCATTTCGAGATCTTTTCCCGCTGATT TGATTTGCCGTCTGTTTTTTCAGTCGGATTTTCTCGTCGAACGACTGGGC GGGCCGAAGGTCTACACTCAGCGGAAGGGGCACTTCCGTTTAATAACTAG ACATTCCCCGTATGACCTAAACCCGAAATCAGCACGGCGATGGCTAGAGG TGAGCAGGGATGTTCCTAACCACAAGGTCGAGATTCGCGCTTGTGCTGCG GCTTGCGAGTCCGTTGCAGCTAATATTATGCTATGCTATGTTATGATATT CTGCGCTATGTTATGATATTATGTGCTATATTATGCTATTCTCATGAGCC TTCTCAGGGTATCTTATATTTTCTTCGGGTTGCACATATTTCGCTTTCCC TTCACGTGTCACAAAACAAAGCACATGAAGGCTGCTCTGGATTCGCTGTC GGGAGTGGACAAGGATTCTAGAGATTTGCTCATGGCGTTCTTCTCGCACA TGGCGTTTTTCCTGACGGCGGGCAAAGACATGATGAACCCCAGCAATCTT GTGGACTACCACAACAAAATGGCAGAATCTTCCGGGAAGGTCCCGTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig4761:1147..2544-

>mRNA_H-elongata_contig4761.11897.1 ID=mRNA_H-elongata_contig4761.11897.1|Name=mRNA_H-elongata_contig4761.11897.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig4761:1147..2544- (Himanthalia elongata Himel1 dioecious)
CAGGCTCTCACTGCTTACGCTTGTGCGGCAAGTGGTTTCACACGAGAAGA
GGGCTTGGCCGTGGACAAGGTCAACCTCTACGAGCGCCTCGGCCGCGAAG
TGATCGAGGAAATTTCGACAGCGTTTTACGGCAGCAGGCTCTCACTGCTT
ACGCTTGTGCGGCAAGTGGTTTCACACGAGAAGAGGGCTTGGCCGTGGAC
AAGGTCAACCTCTACGAGCGCCTCGGCCGCGAAGTGATCGAGGAAATTTC
GACAGCGTTTTACGGCAGGGTGTTTGACGACGAGGAATGGTTCAGGTCGA
TATTTTCCGCGACAACGAAGGCTGAAGCGATTCGAAATCAGGGTGTTTGA
CGACGAGGAATGGTTCAGGTCGATATTTTCCGCGACAACGAAGGCTGAAG
CGATTCGAAATCAGTCGGATTTTCTCGTCGAACGACTGGGCGGGCCGAAG
GTCTACACTCAGCGGAAGGGGCACTTCCGTTTAATAACTAGACATTCCCC
GTATGACCTAAACCCGAAATCAGCACGGCGATGGCTAGAGTCGGATTTTC
TCGTCGAACGACTGGGCGGGCCGAAGGTCTACACTCAGCGGAAGGGGCAC
TTCCGTTTAATAACTAGACATTCCCCGTATGACCTAAACCCGAAATCAGC
ACGGCGATGGCTAGAGCACATGAAGGCTGCTCTGGATTCGCTGTCGGGAG
TGGACAAGGATTCTAGAGATTTGCTCATGGCGTTCTTCTCGCACATGGCG
TTTTTCCTGACGGCGGGCAAAGACATGATGAACCCCAGCAATCTTGTGGA
CTACCACAACAAAATGGCAGAATCTTCCGGGAAGGTCCCGTAGCACATGA
AGGCTGCTCTGGATTCGCTGTCGGGAGTGGACAAGGATTCTAGAGATTTG
CTCATGGCGTTCTTCTCGCACATGGCGTTTTTCCTGACGGCGGGCAAAGA
CATGATGAACCCCAGCAATCTTGTGGACTACCACAACAAAATGGCAGAAT
CTTCCGGGAAGGTCCCGTAG
back to top