mRNA_H-elongata_contig47597.11895.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47597.11895.1
Unique NamemRNA_H-elongata_contig47597.11895.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig47597.11895.1 vs. uniprot
Match: A0A6H5KRU5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRU5_9PHAE)

HSP 1 Score: 451 bits (1160), Expect = 8.730e-147
Identity = 264/480 (55.00%), Postives = 304/480 (63.33%), Query Frame = 1
Query:   10 MGGLKRSLVVAGFLASASR--TSGYLFPVLTRPSS--LSTTSTGQAIAARQAEQNTRQHPPSLFPRT---ASAGVVVEEPLRHKSEADVVNN---------FIWPSVTRSPRPAGIIESDGPREGGKRERDDGKSPDFELNLGRVISTLREDYPRILFDQPSFDIFTEKIELRDPTGVAFRGISNYKRVFATLRFFRQTFVNDASTTFRLTYDWSKQQVRVTWNVVLQLKTRQRPFYVDAISAYHINKDGIAYRHDLETVVVNGTPVEPPFAYAWINLPAWVSRGVGTKPP----ALPIPHGAVGPAR---FHAQPTALEFDVDALAVLRAAQTDPTLRTDFMETLEVLMAADGGGEVVS--------------------TDETVGGGGNGVVEEREIPVKKEVRAIKSRKNRWFG-------CDTSFDCTGGMACCDFGLVKVCCSNGVRQPKFGDLVPSLVPIPGSGRNENDSPARRP 1299
            MGG+KRSL+ AG LA+ S   T  YLFP    PS   LS+ +T + I  R++        PS    T   A+ G     P + +  AD+V++          I+PS+TR PRP GII  DG  + G RERDDGKSPDFE+NLG+VISTLREDYPRI FD P+FDIFTE+IELRDPTGVAFRGISNYKRVFATLRFFRQTF+NDA+TTFRLTYDWSKQQVRVTWNVVLQLK RQRP YVD ISAYHIN DG+A+RHDLETVVVNG  VEPPFAYAWINLPAWVSRG   KP     ALP PH  +G A    F  Q    E  V A+    AA+TD  LR D+M+ L  ++  D  G   S                                               K+    WFG       C+TS+DCTGGM CCDF L+KVCCSNG+RQPKFG+L+PSLVPIPG GRNEND+P R P
Sbjct:    1 MGGIKRSLLAAGLLATTSTKTTYAYLFPT---PSGAGLSSVATSRNIEDRKSSVCRLHGSPSPRMSTMSPAAEGTEASAPTQARGAADLVSSASGAQLASSLIFPSITRQPRP-GIIARDGTEDLGMRERDDGKSPDFEVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPTGVAFRGISNYKRVFATLRFFRQTFMNDATTTFRLTYDWSKQQVRVTWNVVLQLKARQRPIYVDGISAYHINSDGLAHRHDLETVVVNGRAVEPPFAYAWINLPAWVSRGAVAKPSGAGAALPTPHAVIGGAPTQLFEQQQGEAEDAVGAM--FDAARTDSELRGDYMQALSTVLMMDTDGVSESGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNNAGGWFGSKGAELACETSWDCTGGMVCCDFVLLKVCCSNGIRQPKFGELIPSLVPIPGRGRNENDNPKRIP 474          
BLAST of mRNA_H-elongata_contig47597.11895.1 vs. uniprot
Match: D8LJ76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ76_ECTSI)

HSP 1 Score: 220 bits (561), Expect = 5.980e-61
Identity = 131/354 (37.01%), Postives = 177/354 (50.00%), Query Frame = 1
Query:  331 EGGKRERDDGKSPDFELNLGRVISTLREDYPRILFDQPSFDIFTEKIELRDPTGVAFRGISNYKRVFATLRFFRQTFVNDASTTFRLTYDWSKQQVRVTWNVVLQLKTRQ-RPFYVDAISAYHINKDGIAYRHDLETVVVNGTPVEPPFAYAWINLPAWVSRG----VGTKPPALPIPH--------------------GAVGPARFHAQPTALEFDVDALAVLRAAQTDPTLRTDFMETLEVLMAADGGGEVVSTDETVGGGGNGVVEEREIPVKKEVRAIKSRKNRW-------FGCDTSFDCTGGMACCDFGLVKVCCSNGVRQPKFGDLVPSLVPIPGSGRNENDSPARR 1296
            EG K E++  +  +F  NLG+VI TLREDY  +L +  +F+I+T  ++LRDP+GV   G+  YKR+F T RF R+T V+D ST FRL+YD S+QQVR+TW++VL       RP ++D  S Y ++ +G+  RHD+ET++VNGTPV+PPFA AW+ LP+WV++G    V   P  + +                      G     R     +        LA +RAA    T                                                     K  W         C+TSFDCTGG  CCD  +VK+CCSNGV Q K GDL+PSL+PIPG GR E D   R+
Sbjct:    8 EGEKNEKEKREQTEFNTNLGKVIDTLREDYATMLDEPLNFEIYTPDLQLRDPSGVVLTGLPAYKRMFGTFRFVRKTLVHDVSTVFRLSYDGSRQQVRITWHLVLDATPMVVRPVHLDGTSVYGLSTEGLVRRHDVETIIVNGTPVKPPFAQAWMQLPSWVTQGRSGGVAGAPGMISVSSSSGDVWGGMDDFNRSGRRRSGGNFERRIPVDLSGTAMAFQGLAGVRAASI--TRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGMWPIDYKGPLACETSFDCTGGYVCCDLVVVKICCSNGVMQRKPGDLIPSLIPIPGRGRTELDQCQRQ 359          
BLAST of mRNA_H-elongata_contig47597.11895.1 vs. uniprot
Match: A0A6H5JCH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH5_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 1.370e-54
Identity = 146/458 (31.88%), Postives = 198/458 (43.23%), Query Frame = 1
Query:  247 ADVVNNFIWPSVTRSPRPAGIIESDGPREGGKRERDDGKSPDFELNLGRVISTLREDYPRILFDQPSFDIFTEKIELRDPTGVAFRGISNYKRVFATLRFFRQTFVNDASTTFRLTYDWSKQQ---------------------------------------VRVTWNVVLQLKTR-QRPFYVDAISAYHINKDGIAYRHDLETVVVNGTPVEPPFAYAWINLPAWVSRG----VGTKPPALPIPH--------------GAVGPARFHAQPTALEFDVDALAVLRAAQTDPTLRTDFMETLEVLMAADGGGEVVSTDETVGGGGNGVVEEREIPVKKEVRAIKSR-------------------------------------------KNRW-------FGCDTSFDCTGGMACCDFGLVKVCCSNGVRQPKFGDLVPSLVPIPGSGRNENDSPARR 1296
            A   +  ++PSV RSP PAG I      EG K+E++  +  +F  NLG+VI TLREDYP +L +  +FDI+T  ++LRDP+GV   G+  YKR+F T RF R+T V+D ST FRL+YD S+QQ                                       VRVTW++VL       RP ++D  S Y ++ +G+  RHDLET++VNGTPV+PPFA AW+ LP+WV++G    V   P    +                G     +F  +   ++    A+A    A+      T   + L   +  D                                                                                K  W         C+TSFDCTGG  CCD  +VK+CCSNGV Q K GDL+PSL+PIPG GR E D   R+
Sbjct:   73 ASQASQGVFPSVARSPMPAGEIY-----EGEKKEKEKREQAEFNTNLGKVIDTLREDYPTMLDEPLNFDIYTPDLQLRDPSGVILTGLPAYKRMFGTFRFVRKTLVHDVSTVFRLSYDGSRQQDDEQLLVHPCEMQPWTGRNDWPSVIGSVGNNAPSSRGRVVRVTWHLVLDATPMVARPVHLDGTSVYGLSTEGLVRRHDLETIIVNGTPVKPPFAQAWMQLPSWVTQGRSGGVAGAPGMTSVSSSGGVRGEIDDFDRSGRRSGGKFERR-IPMDLSGTAMAFQGLAEVRAASITRRRKGLLAAVGFDASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGMWPIDYKGPLACETSFDCTGGYVCCDLVVVKICCSNGVMQRKPGDLIPSLIPIPGRGRTELDQCQRQ 524          
BLAST of mRNA_H-elongata_contig47597.11895.1 vs. uniprot
Match: A0A836CIZ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIZ0_9STRA)

HSP 1 Score: 178 bits (451), Expect = 3.730e-46
Identity = 114/315 (36.19%), Postives = 153/315 (48.57%), Query Frame = 1
Query:  361 KSPDFELNLGRVISTLREDYPRILFDQPSFDIFTEKIELRDPTGVAFRGISNYKRVFATLRFFRQTFVNDASTTFRLTYDWSKQQVRVTWNVVLQLKTRQ-RPFYVDAISAYHINKDGIAYRHDLETVVVNGTPVEPPFAY-AWINLPAWVSRGVGTKPPALPIPHGAVGPARFHAQPTALEFDVDALAVLRAAQTDPTLRTDFMETLEVLMAADGGGEVVSTDETVGGGGNGVVEEREIPVKKEVRAIKSRKNRWFGCDTSFDCTGGMACCDFGLVKVCCSNGVRQPKFGDLVPSLVPIPGSGRNENDSPARRP 1299
            ++PDFE NLG+VI TLR DYP +L +   + I+T+ I ++DP+GV F+GI  YKR+FATLRFFR TFV+   T FR+TYDW++Q+VRV W++ L  K R   P +VD IS YHIN +G    HDLET++V            A + L     +GVG               A   A  TA+                              +AA   G+         GGG+   +  + P     R    + +   GC+ S+DC   M CCDF L KVCC+ G+  P      P LVPIP    +    P R P
Sbjct:   36 RNPDFEPNLGKVIDTLRSDYPELLNEPLDYSIYTDDITVKDPSGVEFKGIGTYKRLFATLRFFRHTFVDTVDTRFRVTYDWARQRVRVNWHMALSFKARAGHPVFVDCISVYHINDEGFVSAHDLETIMVXXXXXXXXXXXXAMMGLWVRSEKGVG---------------AAAAATTTAMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAAALRGDS-------SGGGDAGKDRSKAP-----RLAWPKVDLPSGCEDSWDCESPMTCCDFALFKVCCNQGMGSPV---TEPRLVPIPIPVEDYPQYPPRYP 320          
BLAST of mRNA_H-elongata_contig47597.11895.1 vs. uniprot
Match: A0A0M0JBU2_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JBU2_9EUKA)

HSP 1 Score: 124 bits (310), Expect = 1.180e-26
Identity = 107/346 (30.92%), Postives = 144/346 (41.62%), Query Frame = 1
Query:  373 FELNLGRVISTLREDYPRILFDQPSFDIFTEKIELRDPTGVAFRGISNYKRVFATLRFFRQTFVNDASTTFRLTYDWSKQQVRVTWNVVLQLKTRQRPF-----------YVDAISAYHINKDGIAYRHDLETVVVNGT-PVEPPFAYAWINLPAWVSRGVGTKPPALPIPHGAVGPARFHAQPTA---LEFDVDALAV-LRAAQTDPTLRTDFMETLEVLMAADGGGEVVSTDETVGGGGNGVVEEREIPVKKEVRAIKSRKNRW--------FG------CDTSFDCTGGMACCDFGLVKVCCSNGVRQPKF-----GDLVPSLVPIPGSGRNENDSPARRPQQ 1305
            F+LN GR I  LR DYPR+  ++P   IFT+ IEL DP+G    G   Y+RVF  LRF R+T + DA    RL  D   + +RV WN  L ++                 ++D +S Y ++KDG+  +H LE +V+ G  P+  P   A+    AW + G  T   A+P             QP A   L F   + +     A T+ T   D         A        S DET          ER     K+ R    R  +         FG      C+TS+DC   M CCD     VCC+ G+  P       G L    +PIP   R+    P R P Q
Sbjct:   79 FKLNQGRAIDVLRHDYPRLFTERPDMSIFTDNIELHDPSGKRLAGKKQYERVFDALRFLRRTTMQDAQVGIRLVAD--DKSIRVRWNAKLWMRDPATGLTTLVNGEPALVHIDGVSVYDLDKDGLIRQHRLENIVLTGQEPLATPIQLAF----AWPATGYATPQAAVPF-----------FQPLADALLNFGFSSTSSGASEAGTEGTESEDGRRAAPTRRAPPPQASA-SDDETPL---ERAARERAEDAAKQQRLRDLRTPKTAPKSGVDLFGLTGPQSCETSYDCDAPMVCCDLLFATVCCTGGLLIPTADRRMQGSLQRQAIPIPVE-RDRAPQPPRYPGQ 402          
BLAST of mRNA_H-elongata_contig47597.11895.1 vs. uniprot
Match: A0A7S3JV21_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JV21_9STRA)

HSP 1 Score: 118 bits (296), Expect = 3.620e-25
Identity = 90/322 (27.95%), Postives = 147/322 (45.65%), Query Frame = 1
Query:  370 DFELNLGRVISTLREDYPRILFDQP-SFDIFTEKIELRDPTGVAFRGISNYKRVFATLRFFRQTFVNDASTT-FRLTYDWSKQQVRVTWNVVLQLKTRQRPFYVDAISAYHINKDGIAYRHDLETVVVNGTPVEPPFAYAWINLPAWVSRGVGTKPPALPIPHGAVGPARFHAQPTALEFDVDALAVLRAAQTDPTLRTDFMETLEVLMAADGGGEVVSTDETVGGGGNGVVEEREIPVKKEVRAIKSRKNRWFG-----CDTSFDCTGGMACCDFGLVKVCCSNGVRQPKF--GDLVPSLVPIPGSGRNENDSPARRPQQP 1308
            +F+LN GR I  LREDY  + FD+   ++I+T+ + + DP+GV   G++ Y++ FA +R FR+   +D S       YD ++QQ+ + W     +K  + P YV A+S +H+N +G  ++H ++ ++ NG  +  P     ++    + R     P A P                  +FD    ++ + +Q   +L+  +  T+++L A +        D   G  G  VV E      K        K R  G     C+  +DC   + CCDF  VKVCC  G   P F      P  +PIP      +  P +RP+ P
Sbjct:   61 EFDLNKGRCIDVLREDYA-VFFDRDLRYEIYTKGLRIVDPSGVEIWGLAAYRQFFAAVRLFRKMACDDVSMMRLNTQYDANRQQIILQWYSKWNVKGAKEPAYVSAVSTFHLNNNGHVHKHVVDRIMFNGKQMGTP-----VDALYGLRRNFVRSPVACP---------------GCSDFDF-LKSIHQNSQYTLSLKPTYANTVQLLQANE-----EDNDAPPGSSGGAVVAEDTSKKNKPKSTGTQSKPRQKGGLLAKCEYMWDCEAPLNCCDFIAVKVCCGGGQGIPAFLQPPAQPRAIPIPVP---VDPYPGQRPRNP 352          
BLAST of mRNA_H-elongata_contig47597.11895.1 vs. uniprot
Match: B7G7A7_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G7A7_PHATC)

HSP 1 Score: 118 bits (295), Expect = 3.280e-24
Identity = 97/359 (27.02%), Postives = 154/359 (42.90%), Query Frame = 1
Query:  370 DFELNLGRVISTLREDYPRILFDQPSFDIFTEKIELRDPTGVAFRGISNYKRVFATLRFFRQTFV---NDASTTFRLTYDWSKQQVRVTWNVVLQLKTRQ------RPFYVDAISAYHINKDGIAYRHDLETVVVNGTPVEPPFAYA-------WINLPAWVSR-----GVGTKPPALPIPHGAVGPARFHAQPTALEFDV----------------DALAVLRAAQTD-------------------PTLRTDFMETLEVLMAADGGGEVVSTDETVGGGGNGVVEEREIPVKKEVRAIKSRKNRWFG------CDTSFDCTGGMACCDFGLVKVCCSNGVRQPKF-GDLVPSLVPIP 1257
            +FEL++G+ + TLR DYP+IL DQP F I+ + IE+ DP+GV   GI+ YK  F  L      F+   + +  TFRL YD ++Q +R+ WN   Q+  R+         YVD IS Y +N+DG    H +E +++N TPV+P             +++P+++       G         +P   V P   H +P                       +A  +L A   D                   P    +F+     +   D   +V +  +          +E++           S  N+ FG      C++++DC   + CCDFG V+ CCS+G R     G L  +L+P+P
Sbjct:  131 EFELHVGKALDTLRNDYPKILTDQPDFSIYHKDIEVVDPSGVKVHGINTYKGSFRLLHAL-VAFIYCPSRSGLTFRLCYDKARQAIRIHWNA--QVVPREIFGGSRTTLYVDGISVYEMNRDGDIVAHRIEQLLMNNTPVQPKEGVIAALRQEHGVSVPSFIQNMDSRSGNHNNNNNQLVPFQTVNPWERHREPQLFSLSAMEATSNENPPTDNGNNNANELLHAQYPDLDWPALEAKNKSRKKFGLKPLTPEEFLALATEIQKMDAEQQVAAQMQRXXXXXXXXXKEKDK---------NSLFNKLFGGLLEDTCESNYDCERPLVCCDFGFVQKCCSSGSRVVDLRGQL--ALIPVP 475          
BLAST of mRNA_H-elongata_contig47597.11895.1 vs. uniprot
Match: A0A7S0PU43_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PU43_9EUKA)

HSP 1 Score: 110 bits (274), Expect = 4.420e-23
Identity = 64/176 (36.36%), Postives = 90/176 (51.14%), Query Frame = 1
Query:  238 KSEADVVNNFIWPSVTRSPRPAGIIESDGPREGGKRERDDGKSPDFELNLGRVISTLREDYPRILFDQPSFDIFTEKIELRDPTGVAFRGISNYKRVFATLRFFRQTFVNDASTTFRLTYDWSKQQVRVTWNVVLQLKT----RQRPFYVDAISAYHINKDGIAYRHDLETVVVNG 753
            K  ADV    +WP+ T    P                   G+  +FELN GRVI TLR DYPR+  D+P   IF E +ELRD +GV  RG   Y +VF  LRF R+T ++DA  T+ +  +     +R+ W+  L+L+      QR   +D +S Y ++ DG+   H LE +V  G
Sbjct:   65 KRPADVPATLLWPTPTHMGPP-------------------GRPSEFELNQGRVIDTLRYDYPRLFVDKPDLSIFREDVELRDESGVRLRGKGAYSKVFDMLRFLRRTGMSDAEVTYHIFVN--DATIRMRWSAKLKLRDPAFGMQRLDILDGVSVYELDSDGLVRSHTLEYIVPRG 219          
BLAST of mRNA_H-elongata_contig47597.11895.1 vs. uniprot
Match: A0A7S2WID0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WID0_9STRA)

HSP 1 Score: 107 bits (268), Expect = 5.510e-21
Identity = 89/350 (25.43%), Postives = 151/350 (43.14%), Query Frame = 1
Query:  361 KSPDFELNLGRVISTLREDYPRILFDQPSFDIFTEKIELRDPTGVAFRGISNYKRVFATLRFFRQTFV--NDASTTFRLTYDWSKQQVRVTWNVVLQLKTR---QRPFYVDAISAYHIN-KDGIAYRHDLETVVVNGTPVEPPFAYAWINLPAWVSRGVGTKP--PAL-------PIPHGAVGP-------ARFHAQPTALEFDV----------------------DALAVLRAA-QTDPTLRTDFMETLEVLMAADGGGEVVSTDETVGGGGNGVVEEREIPVKKEVRAIKSRKNRWFG------CDTSFDCTGGMACCDFGLVKVCCSNGVRQPKFGDLVPSLVPIP 1257
            K   FEL LG+V+ TL++DYP IL   P + I+ ++I++ DP+GV    + NYK  F+ +      F    ++   F+L YDW+++ +RV+WNVVL+ +         Y++ IS Y +N + G+  +H +E +++N  PV       ++ +    + G   K   PAL        I H              F+ +PT++ F                        DA    RA     P   T+F+E    ++      E+    ET     N      E+  +   +   S K++  G      C++++DC     CCD G  K CC++G +          ++P+P
Sbjct:   90 KQRQFELKLGKVMDTLKKDYPDILKSDPDYSIYDDEIDVIDPSGVKLHSLKNYKGFFSLMHTVVSMFYCPQESRIQFKLAYDWARKSIRVSWNVVLRPRLHIGNNNDLYINGISVYEMNTQSGLLTQHRVEHLLINNAPVTEAEGI-FVTIRNMATNGESGKEGIPALNTNSRTSTINHATANIKAEFRSFTNFNGRPTSILFSAAQDNGMEDKKNVKHPLFDQKAFDAKNKSRAKFGLKPISPTEFVEIESQVL------ELEKVQETKA---NQWRSAAELASEGNKKKGSSWKDKMLGGLLKDTCESNYDCVRPEVCCDLGFKKTCCASGQKIMNSFRPDNGMLPVP 429          
BLAST of mRNA_H-elongata_contig47597.11895.1 vs. uniprot
Match: B7FQ59_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQ59_PHATC)

HSP 1 Score: 100 bits (248), Expect = 9.780e-20
Identity = 55/142 (38.73%), Postives = 80/142 (56.34%), Query Frame = 1
Query:  370 DFELNLGRVISTLREDYPRILFDQPSFDIFTEKIELRDPTGVAFRGISNYKRVFATLRFFRQTFV-----NDASTTFRLTYDWSKQQVRVTWNVVLQLK-TRQRPFYVDAISAYHINK-DGIAYRHDLETVVVNGTPVEPPF 774
            +F+LNLG+ + TLR D   IL  +P F I+ E I   DP+GV   G+  YK  FA    F QTFV     + +    R+ YD+ +  +R++WN VL  K    RP YVD +S Y +++  G    H +E +++N TPV PP+
Sbjct:   78 EFQLNLGKAMDTLRSDMSDILAKKPDFSIYDEHISAIDPSGVQLTGLDKYKSAFA----FFQTFVGFWFSSRSVVQSRMVYDFCRSSIRISWNAVLVPKFPLGRPLYVDGVSYYQLDRVSGKIVEHKIEKLMINNTPVAPPY 215          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47597.11895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRU5_9PHAE8.730e-14755.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LJ76_ECTSI5.980e-6137.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCH5_9PHAE1.370e-5431.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CIZ0_9STRA3.730e-4636.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0M0JBU2_9EUKA1.180e-2630.92Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
A0A7S3JV21_9STRA3.620e-2527.95Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
B7G7A7_PHATC3.280e-2427.02Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S0PU43_9EUKA4.420e-2336.36Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A7S2WID0_9STRA5.510e-2125.43Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
B7FQ59_PHATC9.780e-2038.73Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47597contigH-elongata_contig47597:169..4276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score445.3
Seed ortholog evalue3.4e-122
Seed eggNOG ortholog2880.D8LGI3
EggNOG free text desc.Uncharacterized conserved protein (DUF2358)
EggNOG OGs2CYHV@1,2S4H3@2759
Ec32 ortholog descriptionProtein of unknown function DUF2358
Ec32 orthologEc-10_001970.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size2561
Cds size1329
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47597.11895.1prot_H-elongata_contig47597.11895.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47597 175..3050 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930786.8038182-UTR-H-elongata_contig47597:168..1741622930786.8038182-UTR-H-elongata_contig47597:168..174Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47597 169..174 +
1691679569.8756218-UTR-H-elongata_contig47597:168..1741691679569.8756218-UTR-H-elongata_contig47597:168..174Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47597 169..174 +
1622930786.8677888-UTR-H-elongata_contig47597:3050..42761622930786.8677888-UTR-H-elongata_contig47597:3050..4276Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47597 3051..4276 +
1691679569.9107082-UTR-H-elongata_contig47597:3050..42761691679569.9107082-UTR-H-elongata_contig47597:3050..4276Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47597 3051..4276 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930786.8204155-CDS-H-elongata_contig47597:174..6541622930786.8204155-CDS-H-elongata_contig47597:174..654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47597 175..654 +
1691679569.8870945-CDS-H-elongata_contig47597:174..6541691679569.8870945-CDS-H-elongata_contig47597:174..654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47597 175..654 +
1622930786.8519905-CDS-H-elongata_contig47597:2201..30501622930786.8519905-CDS-H-elongata_contig47597:2201..3050Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47597 2202..3050 +
1691679569.8973339-CDS-H-elongata_contig47597:2201..30501691679569.8973339-CDS-H-elongata_contig47597:2201..3050Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47597 2202..3050 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47597.11895.1

>prot_H-elongata_contig47597.11895.1 ID=prot_H-elongata_contig47597.11895.1|Name=mRNA_H-elongata_contig47597.11895.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=443bp
MMGGLKRSLVVAGFLASASRTSGYLFPVLTRPSSLSTTSTGQAIAARQAE
QNTRQHPPSLFPRTASAGVVVEEPLRHKSEADVVNNFIWPSVTRSPRPAG
IIESDGPREGGKRERDDGKSPDFELNLGRVISTLREDYPRILFDQPSFDI
FTEKIELRDPTGVAFRGISNYKRVFATLRFFRQTFVNDASTTFRLTYDWS
KQQVRVTWNVVLQLKTRQRPFYVDAISAYHINKDGIAYRHDLETVVVNGT
PVEPPFAYAWINLPAWVSRGVGTKPPALPIPHGAVGPARFHAQPTALEFD
VDALAVLRAAQTDPTLRTDFMETLEVLMAADGGGEVVSTDETVGGGGNGV
VEEREIPVKKEVRAIKSRKNRWFGCDTSFDCTGGMACCDFGLVKVCCSNG
VRQPKFGDLVPSLVPIPGSGRNENDSPARRPQQPQRRTTIDW*
back to top

mRNA from alignment at H-elongata_contig47597:169..4276+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47597.11895.1 ID=mRNA_H-elongata_contig47597.11895.1|Name=mRNA_H-elongata_contig47597.11895.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4108bp|location=Sequence derived from alignment at H-elongata_contig47597:169..4276+ (Himanthalia elongata Himel1 dioecious)
AGGGTTATGATGGGTGGTTTAAAGAGGAGCCTAGTTGTGGCAGGATTCCT CGCCAGCGCTTCGCGGACGTCGGGATATTTGTTTCCCGTTCTTACTCGAC CATCTTCTCTCTCGACCACGAGCACTGGTCAAGCAATCGCAGCGCGCCAG GCCGAGCAGAACACCCGCCAGCATCCCCCGTCTCTTTTTCCCAGGACGGC ATCTGCTGGCGTCGTAGTAGAGGAGCCGCTTCGCCACAAATCGGAAGCTG ACGTAGTGAATAATTTCATATGGCCCTCTGTAACACGGTCTCCGCGGCCC GCAGGAATTATCGAGAGTGATGGGCCTAGGGAAGGTGGAAAACGGGAACG CGACGATGGCAAGAGTCCGGACTTCGAACTTAACTTGGGACGAGTCATCT CCACTCTCAGGGAGGATTATCCGCGGATACTTTTCGATCAGCCTTCGTTC GACATTTTCACGGAAAAGATCGAGCTCCGTGACCCGGTGAGAAGGTGCAT CCACATGAAGATATTCAAGCAGTATTATTATTAGAAAAACCTAGTAAAGA ATCAGTTGGAGACAACCAGTATTAAATCTTCGAATACTCGTTTAGAACAG AGTACGTGGTTCTCGTCATTTTGTAATTTTGATTAGATGGTCCCCAAATT AGAACTATGGGCTTCTTCCCGACACGATGAATTTACTATTGGGGAACCCG ATTAATCTCATGTGGTGATTTTGCGCTCAAAGGTAGTAATGTACACATTC GAACCTGGCGATAGTTGGTCCCCTGGACTGTACCTCTCACGGTGTTAGGA AGGTGTTGATGTCTGGAGGGTTGGAATCAATTAATATGTTTTAAAGAAGA AAACAAAAAGGGCTGTTGTTTCCCTGACTCTGAAATTCGAGTCAGCAGAG ACAAATTAATCAGCACTCTACTTCAATACTTGTACTACGACGTACGTACG CATTTTTTCTTTTGACCAATCACAGAGAGAATCTGGGATGACTGAACAAT ATTTCGTGGTTGGTTGACTCGATGAGTCAGAGTCAATCCTGCCACCATAT AATCCGATTCCCTTCTGAAATTGTTTGACCGCGACTCCACCCGTACAGTA GTATTACTGCCTTTGGTGATGCTTGCGTTGTTCGTAATAGCGTGGACTCG AGGGGGCAATAAGCCCAGAATCAGTAGAAACACCAATCTCGTACGTAATC GATGTGGAAATGTATGATACCTCACCCACCTGTTCATTAATGGTTGAGTC GGAAACTGCTATATATTGGTTGAGTTGTGGGAGAATAGCTCAAGCCTGCA GGCAGGTACCTCCCACCGGAACGAACTGGATAACGACACCATAGCAGCCT TAGGTTCTGTCCTTGTAGACATAAAACACATAACAGCGGGATCAGCTCAC CCGAGGAAAACCTCTTTGAACCTGAGCTAAATATCCAGCTGATTAGTTTG ATCAAATAGCTGCCTCGTGCAGAAAACGTTAAAACTATGATTTTGAGGGG GGTTTAGCTTTTTGGCGTTGTTTTTATTCCCATTTTGTAAGAGTTATCAC TTTCCACCAATAAATTATACCCTAGTAGCTCGTAAGCGTGCCCAGTCTCC GGTATTATTTTTTCCTTTCACCTTCGCCAGCCAGCCCGGCTCTAGCATGA GGATGAGGATGAATTTGTAAGTCTCCTCGAGTTCTCACTTGGAGTAGCTT TTGCGTAATCCCTACCATCCGGAGCTTTGAATGTTCCTGAGGGCCCTGAG GGGTTCGTGGGGTTTGTATTATAAACGATTTTGCGAATAGAAGACGTGGT GCAATCTGCAATTTCGTGAAAGGGTGCTTGCTGTTTGACACCTCATGAAA TTTACACCGTTTTGCCCCCGGCCGTCTACTGAAGTCCACCCCGCCCACCT CTAGTGTCCTCTTACTCGCCTGCCCCTTTCGTGCCTCGTCTCTTCTTGCC ATTCATATTTTCCTGCTGTTTGCGCCACCTACCCGTTCCCTTCATGGCCG CTTGTTCTTCCTTGACGCGACACGTCCTTTCAGACTGGCGTTGCGTTCCG CGGGATCTCGAACTACAAGCGCGTCTTCGCGACTCTGCGGTTCTTCCGGC AAACGTTCGTGAACGACGCTTCTACGACATTTCGCCTGACTTACGACTGG AGCAAGCAGCAGGTCCGGGTGACGTGGAACGTGGTCCTCCAGCTTAAGAC TCGCCAGCGACCCTTCTACGTTGACGCCATCAGCGCCTACCACATCAACA AGGACGGGATTGCCTATCGACACGATCTCGAAACTGTCGTCGTGAACGGC ACCCCGGTCGAACCTCCCTTCGCCTACGCGTGGATCAATCTCCCCGCGTG GGTATCCCGGGGCGTCGGGACAAAGCCGCCCGCGCTACCCATCCCCCACG GAGCCGTAGGGCCCGCTCGTTTTCACGCTCAGCCGACGGCGCTCGAGTTT GATGTCGACGCCTTGGCGGTACTGAGAGCGGCTCAGACAGACCCCACCCT TCGGACGGATTTCATGGAGACTTTAGAGGTTTTAATGGCAGCTGACGGCG GTGGGGAGGTGGTGTCCACGGATGAGACGGTGGGCGGAGGCGGGAACGGG GTGGTCGAGGAACGAGAAATACCCGTCAAGAAGGAGGTTCGGGCCATCAA GAGCAGGAAAAACAGGTGGTTCGGATGCGACACATCTTTCGATTGCACGG GGGGAATGGCGTGCTGCGATTTTGGGCTCGTGAAGGTCTGCTGTAGCAAT GGCGTGCGACAGCCTAAGTTCGGTGATCTGGTGCCGAGCCTCGTGCCTAT CCCTGGTTCTGGTAGGAACGAGAACGACTCCCCGGCAAGGAGGCCGCAGC AGCCGCAAAGGCGGACGACAATCGACTGGTGATGAGATGTTACGGACTCT TGTCTTTGTTGAAAGCACGAACGTGGCTGCAGTTGTCGGTACGGGATTTA AACCTAAGAGATTATCCACGTCAGGGCGATGGACACATATTTGTCGCGCT TGATGCATCGCCGTGCTGTCGTCGTGGTCGAGAGGTTGGATGTGAAACAA ATAGGGGTCGGTTCGTAGTTTTCTTTGATACTAATATGCATACGATTAGC CCCAGAGAGGTTTGTTCATTCTCTTGAGTCTGTAGGGCCTTGAATTATTT TGTTGGTGACAATCACTGTTGACATTATTCGGTATTTGGTGAAGCGGCTA GGCGAGGTACTGGCGTGGTGTGTGTGGTCAAAAGCAACGAACATGGCTGC CGGGTTGCGATTTTTGTTCGTTTTATGCTTTGTCTTACTGCTGAGGAGCC TCTCTCTGAAGGTCATACGTGCATGGAAAAAAAATAATATATATATATAT ATAAAGACTGCGCAGGGTTACTTTTGTTTTGACGAGCTTTCGATATCTCG AGAAGAGGTTGCTGTGGCCGAGGTGTCTAGAAGCGTTTCGGTGTTGGAAA TACTGCAGTAGCGAGAAGCAAGAATATCATGGTCGATTCGGGATTTCTTT CTTCTTTTCTGTACACAATTACATTTCTACCCCGCCCCCTTAAGTCAAGA GGGGGTTTTGTCGTGTGTACATGGTGTCGGCCTGAGAAAAAGCAATCGAG TTCTCTCGTGTCGAAATACGTAGCGCTTCGAGAGAATTCCGGAAATTTCC GGTAACAAGAGTGTATCTGTAGACAGAAAAGATCATTTTGTGTTCGATTG CTGGAGGCTTTTTCGTTGAAATTATCGTTAAAAGTAACTGTTTAATATTG GCATAAAGTGTAGCATAAAAGACCAAGGAAGGGCACACAAGACATTGCTT GCCATGAACAGGGTAGTGGGACTTCTGGTGTTATATCATGTCGCTAACGC GTGGGTGTCTCAAAAACGAAATGGCAAGAGGCAAGAGTCTCTCTGCACGT TACCAATCGAAGGGGATATATCGCGCCAACCACGGGGGAAGTAAGGTACA TCGGGGATAGATGTTATTACTTATTTTAAGTATGCTACAGTAATACTACA ACGTACGTGGTTTGGTCCGCTTTGATGAAAGAAAGGGAAAACCCTACCGT AGAATCAAATGAATTAAATATTCAGGTTAAAAAAAAAAACACATCGAAAC CAACGAAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig47597:169..4276+

>mRNA_H-elongata_contig47597.11895.1 ID=mRNA_H-elongata_contig47597.11895.1|Name=mRNA_H-elongata_contig47597.11895.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2658bp|location=Sequence derived from alignment at H-elongata_contig47597:169..4276+ (Himanthalia elongata Himel1 dioecious)
ATGATGGGTGGTTTAAAGAGGAGCCTAGTTGTGGCAGGATTCCTCGCCAG
CGCTTCGCGGACGTCGGGATATTTGTTTCCCGTTCTTACTCGACCATCTT
CTCTCTCGACCACGAGCACTGGTCAAGCAATCGCAGCGCGCCAGGCCGAG
CAGAACACCCGCCAGCATCCCCCGTCTCTTTTTCCCAGGACGGCATCTGC
TGGCGTCGTAGTAGAGGAGCCGCTTCGCCACAAATCGGAAGCTGACGTAG
TGAATAATTTCATATGGCCCTCTGTAACACGGTCTCCGCGGCCCGCAGGA
ATTATCGAGAGTGATGGGCCTAGGGAAGGTGGAAAACGGGAACGCGACGA
TGGCAAGAGTCCGGACTTCGAACTTAACTTGGGACGAGTCATCTCCACTC
TCAGGGAGGATTATCCGCGGATACTTTTCGATCAGCCTTCGTTCGACATT
TTCACGGAAAAGATCGAGCTCCGTGACCCGATGATGGGTGGTTTAAAGAG
GAGCCTAGTTGTGGCAGGATTCCTCGCCAGCGCTTCGCGGACGTCGGGAT
ATTTGTTTCCCGTTCTTACTCGACCATCTTCTCTCTCGACCACGAGCACT
GGTCAAGCAATCGCAGCGCGCCAGGCCGAGCAGAACACCCGCCAGCATCC
CCCGTCTCTTTTTCCCAGGACGGCATCTGCTGGCGTCGTAGTAGAGGAGC
CGCTTCGCCACAAATCGGAAGCTGACGTAGTGAATAATTTCATATGGCCC
TCTGTAACACGGTCTCCGCGGCCCGCAGGAATTATCGAGAGTGATGGGCC
TAGGGAAGGTGGAAAACGGGAACGCGACGATGGCAAGAGTCCGGACTTCG
AACTTAACTTGGGACGAGTCATCTCCACTCTCAGGGAGGATTATCCGCGG
ATACTTTTCGATCAGCCTTCGTTCGACATTTTCACGGAAAAGATCGAGCT
CCGTGACCCGACTGGCGTTGCGTTCCGCGGGATCTCGAACTACAAGCGCG
TCTTCGCGACTCTGCGGTTCTTCCGGCAAACGTTCGTGAACGACGCTTCT
ACGACATTTCGCCTGACTTACGACTGGAGCAAGCAGCAGGTCCGGGTGAC
GTGGAACGTGGTCCTCCAGCTTAAGACTCGCCAGCGACCCTTCTACGTTG
ACGCCATCAGCGCCTACCACATCAACAAGGACGGGATTGCCTATCGACAC
GATCTCGAAACTGTCGTCGTGAACGGCACCCCGGTCGAACCTCCCTTCGC
CTACGCGTGGATCAATCTCCCCGCGTGGGTATCCCGGGGCGTCGGGACAA
AGCCGCCCGCGCTACCCATCCCCCACGGAGCCGTAGGGCCCGCTCGTTTT
CACGCTCAGCCGACGGCGCTCGAGTTTGATGTCGACGCCTTGGCGGTACT
GAGAGCGGCTCAGACAGACCCCACCCTTCGGACGGATTTCATGGAGACTT
TAGAGGTTTTAATGGCAGCTGACGGCGGTGGGGAGGTGGTGTCCACGGAT
GAGACGGTGGGCGGAGGCGGGAACGGGGTGGTCGAGGAACGAGAAATACC
CGTCAAGAAGGAGGTTCGGGCCATCAAGAGCAGGAAAAACAGGTGGTTCG
GATGCGACACATCTTTCGATTGCACGGGGGGAATGGCGTGCTGCGATTTT
GGGCTCGTGAAGGTCTGCTGTAGCAATGGCGTGCGACAGCCTAAGTTCGG
TGATCTGGTGCCGAGCCTCGTGCCTATCCCTGGTTCTGGTAGGAACGAGA
ACGACTCCCCGGCAAGGAGGCCGCAGCAGCCGCAAAGGCGGACGACAATC
GACTGGTGAACTGGCGTTGCGTTCCGCGGGATCTCGAACTACAAGCGCGT
CTTCGCGACTCTGCGGTTCTTCCGGCAAACGTTCGTGAACGACGCTTCTA
CGACATTTCGCCTGACTTACGACTGGAGCAAGCAGCAGGTCCGGGTGACG
TGGAACGTGGTCCTCCAGCTTAAGACTCGCCAGCGACCCTTCTACGTTGA
CGCCATCAGCGCCTACCACATCAACAAGGACGGGATTGCCTATCGACACG
ATCTCGAAACTGTCGTCGTGAACGGCACCCCGGTCGAACCTCCCTTCGCC
TACGCGTGGATCAATCTCCCCGCGTGGGTATCCCGGGGCGTCGGGACAAA
GCCGCCCGCGCTACCCATCCCCCACGGAGCCGTAGGGCCCGCTCGTTTTC
ACGCTCAGCCGACGGCGCTCGAGTTTGATGTCGACGCCTTGGCGGTACTG
AGAGCGGCTCAGACAGACCCCACCCTTCGGACGGATTTCATGGAGACTTT
AGAGGTTTTAATGGCAGCTGACGGCGGTGGGGAGGTGGTGTCCACGGATG
AGACGGTGGGCGGAGGCGGGAACGGGGTGGTCGAGGAACGAGAAATACCC
GTCAAGAAGGAGGTTCGGGCCATCAAGAGCAGGAAAAACAGGTGGTTCGG
ATGCGACACATCTTTCGATTGCACGGGGGGAATGGCGTGCTGCGATTTTG
GGCTCGTGAAGGTCTGCTGTAGCAATGGCGTGCGACAGCCTAAGTTCGGT
GATCTGGTGCCGAGCCTCGTGCCTATCCCTGGTTCTGGTAGGAACGAGAA
CGACTCCCCGGCAAGGAGGCCGCAGCAGCCGCAAAGGCGGACGACAATCG
ACTGGTGA
back to top