mRNA_H-elongata_contig4759.11891.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4759.11891.1
Unique NamemRNA_H-elongata_contig4759.11891.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4759.11891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4759contigH-elongata_contig4759:2487..3025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size539
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4759.11891.1prot_H-elongata_contig4759.11891.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4759 2637..2975 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930786.2382863-UTR-H-elongata_contig4759:2486..26361622930786.2382863-UTR-H-elongata_contig4759:2486..2636Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4759 2487..2636 +
1691679569.5888762-UTR-H-elongata_contig4759:2486..26361691679569.5888762-UTR-H-elongata_contig4759:2486..2636Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4759 2487..2636 +
1622930786.2712646-UTR-H-elongata_contig4759:2975..30251622930786.2712646-UTR-H-elongata_contig4759:2975..3025Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4759 2976..3025 +
1691679569.6170232-UTR-H-elongata_contig4759:2975..30251691679569.6170232-UTR-H-elongata_contig4759:2975..3025Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4759 2976..3025 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930786.2570975-CDS-H-elongata_contig4759:2636..29751622930786.2570975-CDS-H-elongata_contig4759:2636..2975Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 2637..2975 +
1691679569.6073654-CDS-H-elongata_contig4759:2636..29751691679569.6073654-CDS-H-elongata_contig4759:2636..2975Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4759 2637..2975 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4759.11891.1

>prot_H-elongata_contig4759.11891.1 ID=prot_H-elongata_contig4759.11891.1|Name=mRNA_H-elongata_contig4759.11891.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
MNPRNRVPCVNYSLRALRENEEREIGDCGRYIYFLIAPRGAVSDDPYSSL
AFNTFLGGELCAVSSPPNFAPSYTRPTALSRTYAVSRGVRMIATLGEGGA
MEHKAFVRRNAL*
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mRNA from alignment at H-elongata_contig4759:2487..3025+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4759.11891.1 ID=mRNA_H-elongata_contig4759.11891.1|Name=mRNA_H-elongata_contig4759.11891.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=539bp|location=Sequence derived from alignment at H-elongata_contig4759:2487..3025+ (Himanthalia elongata Himel1 dioecious)
AGGTGATTTATGACGCTGGGCGTGGATGTGTTATGAATATTCAAACAGAA
AAAGATATTAAAGTTTTTCCCGGTGGGAACCCGTGCTCCCGCCAAGTTCC
CGCATCAAAACAGGCGATGTATTCGGCAGTGCGGTGTGACTAGGTTCGAG
ATGAATCCACGCAATCGAGTACCATGCGTAAACTATAGTTTAAGAGCGTT
GAGAGAGAATGAAGAACGTGAAATAGGCGATTGCGGTAGATATATATATT
TTTTAATCGCTCCACGTGGTGCTGTCAGCGATGACCCTTACTCCTCCCTC
GCCTTCAACACCTTCCTTGGGGGTGAGTTGTGCGCTGTATCTTCCCCGCC
GAATTTCGCGCCATCTTACACCAGACCAACTGCGCTGTCCCGTACCTACG
CCGTTAGCAGAGGAGTTCGCATGATCGCGACGTTGGGGGAGGGGGGGGCG
ATGGAGCACAAGGCTTTTGTCAGACGTAACGCTCTGTAGCGAGCACCGGG
CACCTGCTGCGCGGTGTCCGCTTTCCAGGGGAGGGTCCT
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Coding sequence (CDS) from alignment at H-elongata_contig4759:2487..3025+

>mRNA_H-elongata_contig4759.11891.1 ID=mRNA_H-elongata_contig4759.11891.1|Name=mRNA_H-elongata_contig4759.11891.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig4759:2487..3025+ (Himanthalia elongata Himel1 dioecious)
ATGAATCCACGCAATCGAGTACCATGCGTAAACTATAGTTTAAGAGCGTT
GAGAGAGAATGAAGAACGTGAAATAGGCGATTGCGGTAGATATATATATT
TTTTAATCGCTCCACGTGGTGCTGTCAGCGATGACCCTTACTCCTCCCTC
GCCTTCAACACCTTCCTTGGGGGTGAGTTGTGCGCTGTATCTTCCCCGCC
GAATTTCGCGCCATCTTACACCAGACCAACTGCGCTGTCCCGTACCTACG
CCGTTAGCAGAGGAGTTCGCATGATCGCGACGTTGGGGGAGGGGGGGGCG
ATGGAGCACAAGGCTTTTGTCAGACGTAACGCTCTGTAGATGAATCCACG
CAATCGAGTACCATGCGTAAACTATAGTTTAAGAGCGTTGAGAGAGAATG
AAGAACGTGAAATAGGCGATTGCGGTAGATATATATATTTTTTAATCGCT
CCACGTGGTGCTGTCAGCGATGACCCTTACTCCTCCCTCGCCTTCAACAC
CTTCCTTGGGGGTGAGTTGTGCGCTGTATCTTCCCCGCCGAATTTCGCGC
CATCTTACACCAGACCAACTGCGCTGTCCCGTACCTACGCCGTTAGCAGA
GGAGTTCGCATGATCGCGACGTTGGGGGAGGGGGGGGCGATGGAGCACAA
GGCTTTTGTCAGACGTAACGCTCTGTAG
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