mRNA_H-elongata_contig47588.11888.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47588.11888.1
Unique NamemRNA_H-elongata_contig47588.11888.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig47588.11888.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 2.230e-10
Identity = 32/74 (43.24%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:  280 MSFSMER--NVINALEQLSIPVSECATHQLSTAILWGLVINGTAKTGKNSEAKTLVVRVAALVRIFSHSAVNND 495
            ++F++++  NV+NA   L + V +C  H+L++  +W L ING+ +TG+N   + L+ R+AA+V +FSHSAVNND
Sbjct:   23 LAFTVDQGGNVVNACRNLDVEVLKCNAHRLNSVTMWALGINGSIRTGENPAMEKLMKRLAAVVGVFSHSAVNND 96
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BLAST of mRNA_H-elongata_contig47588.11888.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 2.590e-10
Identity = 32/74 (43.24%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:  280 MSFSMER--NVINALEQLSIPVSECATHQLSTAILWGLVINGTAKTGKNSEAKTLVVRVAALVRIFSHSAVNND 495
            ++F++++  NV+NA   L + V +C  H+L++  +W L ING+ +TG+N   + L+ R+AA+V +FSHSAVNND
Sbjct:  351 LAFTVDQGGNVVNACRNLDVEVLKCNAHRLNSVTMWALGINGSIRTGENPAMEKLMKRLAAVVGVFSHSAVNND 424
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BLAST of mRNA_H-elongata_contig47588.11888.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.490e-9
Identity = 35/66 (53.03%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:  298 RNVINALEQLSIPVSECATHQLSTAILWGLVINGTAKTGKNSEAKTLVVRVAALVRIFSHSAVNND 495
            +NV+NA   L +PV EC  H++++A+LW L I G+A T KN   K L    AALV +FSHSAVNND
Sbjct:  180 KNVVNACTALGVPVVECNCHRVNSAVLWALGIAGSATTCKNKPMKKL----AALVGVFSHSAVNND 241
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BLAST of mRNA_H-elongata_contig47588.11888.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 4.960e-9
Identity = 34/66 (51.52%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:  298 RNVINALEQLSIPVSECATHQLSTAILWGLVINGTAKTGKNSEAKTLVVRVAALVRIFSHSAVNND 495
            +NV+NA   L +PV EC  H++++A+LW L I G+  T KN   K L    AALV +FSHSAVNND
Sbjct:  180 KNVVNACTALGVPVVECNCHRVNSAVLWALGIAGSVTTCKNKPMKKL----AALVGVFSHSAVNND 241
[Close]
BLAST of mRNA_H-elongata_contig47588.11888.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.760e-8
Identity = 35/86 (40.70%), Postives = 55/86 (63.95%), Query Frame = 1 
Query:  280 MSFSMER--NVINALEQLSIPVSECATHQLSTAILWGLVINGTAKTGKNSEAKTLVVRVAALVRIFSHSAVNNDAHGAQDALREIL 531
            ++F++++  NV+NA + L +PV +C  H+++TA+LW L I G  +  +N     L+ ++AALV +FSHSAVNND       L E L
Sbjct:  361 LAFTVDQGGNVVNACKALGVPVVKCNCHRVNTAVLWALGIAGNGR--RNKVMGDLMKKLAALVGVFSHSAVNNDKLKELQRLEEDL 444
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BLAST of mRNA_H-elongata_contig47588.11888.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 4.780e-8
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:  298 RNVINALEQLSIPVSECATHQLSTAILWGLVINGTAKTGKNSEAKTLVVRVAALVRIFSHSAVNND 495
            +N+INA   L + V EC  H+++TA++W L I   AK  KN    TL+ ++AA+V +FSHSAVNND
Sbjct:   20 KNIINACTALDVTVVECNCHRVNTAVVWALGI--AAKGRKNPTMGTLMKKLAAMVGVFSHSAVNND 83
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BLAST of mRNA_H-elongata_contig47588.11888.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.360e-7
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:  298 RNVINALEQLSIPVSECATHQLSTAILWGLVINGTAKTGKNSEAKTLVVRVAALVRIFSHSAVNND 495
            +N+INA   L + V EC  H+L+TA++W L I G  +   N    TL+ ++AA+V +FSHSAVNND
Sbjct:  176 KNIINACTALGVTVVECNCHRLNTAVVWALGIAGKGRL--NPAMGTLMKKLAAMVGVFSHSAVNND 239
[Close]
BLAST of mRNA_H-elongata_contig47588.11888.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.450e-7
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:  298 RNVINALEQLSIPVSECATHQLSTAILWGLVINGTAKTGKNSEAKTLVVRVAALVRIFSHSAVNND 495
            +N+INA   L + V EC  H+L+TA++W L I G  +   N    TL+ ++AA+V +FSHSAVNND
Sbjct:  371 KNIINACTALGVTVVECNCHRLNTAVVWALGIAGKGRL--NPAMGTLMKKLAAMVGVFSHSAVNND 434
[Close]
BLAST of mRNA_H-elongata_contig47588.11888.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.040e-6
Identity = 29/73 (39.73%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:  280 MSFSMER--NVINALEQLSIPVSECATHQLSTAILWGLVINGTAKTGKNSEAKTLVVRVAALVRIFSHSAVNN 492
            ++F++++  NV+NA   L + V +C  H++++A++W L I G+A T +N++   L+ ++AALV +FS SAVNN
Sbjct:   27 LAFTVDQGGNVVNACTALGVQVVKCNCHRINSAVVWALGIAGSATTCRNTKMGGLMKKLAALVGVFSPSAVNN 99
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47588.11888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE2.230e-1043.24Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE2.590e-1043.24Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JQI6_9PHAE1.490e-953.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZU3_9PHAE4.960e-951.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE1.760e-840.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS2_9PHAE4.780e-848.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTB8_9PHAE1.360e-746.97Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE1.450e-746.97Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KDJ6_9PHAE1.040e-639.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47588contigH-elongata_contig47588:1716..2748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size671
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47588.11888.1prot_H-elongata_contig47588.11888.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47588 1730..2121 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930786.010351-UTR-H-elongata_contig47588:1715..17291622930786.010351-UTR-H-elongata_contig47588:1715..1729Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47588 1716..1729 -
1691679569.4993286-UTR-H-elongata_contig47588:1715..17291691679569.4993286-UTR-H-elongata_contig47588:1715..1729Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47588 1716..1729 -
1622930786.0652244-UTR-H-elongata_contig47588:2121..21731622930786.0652244-UTR-H-elongata_contig47588:2121..2173Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47588 2122..2173 -
1691679569.5353417-UTR-H-elongata_contig47588:2121..21731691679569.5353417-UTR-H-elongata_contig47588:2121..2173Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47588 2122..2173 -
1622930786.0826268-UTR-H-elongata_contig47588:2521..27481622930786.0826268-UTR-H-elongata_contig47588:2521..2748Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47588 2522..2748 -
1691679569.5448666-UTR-H-elongata_contig47588:2521..27481691679569.5448666-UTR-H-elongata_contig47588:2521..2748Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47588 2522..2748 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930786.0279956-CDS-H-elongata_contig47588:1729..20871622930786.0279956-CDS-H-elongata_contig47588:1729..2087Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47588 1730..2087 -
1691679569.5157642-CDS-H-elongata_contig47588:1729..20871691679569.5157642-CDS-H-elongata_contig47588:1729..2087Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47588 1730..2087 -
1622930786.0461338-CDS-H-elongata_contig47588:2101..21211622930786.0461338-CDS-H-elongata_contig47588:2101..2121Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47588 2102..2121 -
1691679569.5255308-CDS-H-elongata_contig47588:2101..21211691679569.5255308-CDS-H-elongata_contig47588:2101..2121Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47588 2102..2121 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47588.11888.1

>prot_H-elongata_contig47588.11888.1 ID=prot_H-elongata_contig47588.11888.1|Name=mRNA_H-elongata_contig47588.11888.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
MSFSMERNVINALEQLSIPVSECATHQLSTAILWGLVINGTAKTGKNSEA
KTLVVRVAALVRIFSHSAVNNDAHGAQDALREILREDPAPRKDVEALAWM
GDALDPLARTIEKISRGTGDDGLAG*
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mRNA from alignment at H-elongata_contig47588:1716..2748-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47588.11888.1 ID=mRNA_H-elongata_contig47588.11888.1|Name=mRNA_H-elongata_contig47588.11888.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1033bp|location=Sequence derived from alignment at H-elongata_contig47588:1716..2748- (Himanthalia elongata Himel1 dioecious)
CCATCGACAAGATGGAGGCCGTGCACGATTAGATGAAGGCCGTGGGCTGC
AAGGGTCCCTTCGCCTCCCTGCAGCTCGACCTCACCAGCGTCGGCATTAC
CGAGCACTGTACAGCTTCCGCGACGATCTTGCCCGTGGTATCCGACGCCC
TCAAGAAGCCCACCCTCGCCATGAAGGCCTTCCACGGCCAACACACCACT
TCGCACATCAAAGGCTGGATTGAGGAGGTGTGTGTGTGTGTGTTTCTTTT
TCGTCAGTTTTCCTATTCAGAGACGCCTTTCTGTTTTTTTGCTTGTGGAA
CACATAATTTATGTTGACGTGAAATATATAATATTTTTCCTCGCGAGGTT
GTCAGACTCCAGTCTTATAAATCAGACTGATACCCTTACACTTTGACAGC
GCTGTAGTAGCACAAAAGTGATATTGTGCTTTTCATTTTGTTTGTCGCAG
TTTCGGTGCCGAGATGATGCCAATCACCTTGCATCCACCCGTCAATGGAA
TGAAAGATATCGCTTATGTCCTTGACCAACGTCCTCTTTCCTATATCTCA
ATTCTGACGCACTTAATCGTATCAGCTGATGTTCAACTTGTTCAAAAGTT
TCAAGGGCGAGGCTGTTCACCCAACGGATGTCTTTTTCCATGGAACGGTG
GAGCAGAGCAGGAACGTCATCAACGCGCTGGAGCAGCTCTCCATTCCCGT
CTCGGAGTGCGCCACTCACCAACTCAGCACCGCCATCCTGTGGGGTCTCG
TGATCAACGGGACCGCTAAGACTGGCAAAAACTCCGAGGCGAAGACTCTC
GTCGTCAGGGTTGCTGCTTTGGTCCGCATCTTCTCGCACTCCGCCGTCAA
CAACGATGCTCATGGTGCTCAAGACGCCCTCCGTGAGATTCTGCGCGAGG
ATCCCGCCCCGAGGAAGGATGTGGAGGCCCTGGCCTGGATGGGTGACGCC
CTCGACCCATTAGCGAGGACTATTGAGAAAATCTCCCGAGGGACTGGCGA
TGATGGCCTTGCAGGGTAGGTAGATATATACGG
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Coding sequence (CDS) from alignment at H-elongata_contig47588:1716..2748-

>mRNA_H-elongata_contig47588.11888.1 ID=mRNA_H-elongata_contig47588.11888.1|Name=mRNA_H-elongata_contig47588.11888.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig47588:1716..2748- (Himanthalia elongata Himel1 dioecious)
ATGTCTTTTTCCATGGAACGATGTCTTTTTCCATGGAACGGAACGTCATC
AACGCGCTGGAGCAGCTCTCCATTCCCGTCTCGGAGTGCGCCACTCACCA
ACTCAGCACCGCCATCCTGTGGGGTCTCGTGATCAACGGGACCGCTAAGA
CTGGCAAAAACTCCGAGGCGAAGACTCTCGTCGTCAGGGTTGCTGCTTTG
GTCCGCATCTTCTCGCACTCCGCCGTCAACAACGATGCTCATGGTGCTCA
AGACGCCCTCCGTGAGATTCTGCGCGAGGATCCCGCCCCGAGGAAGGATG
TGGAGGCCCTGGCCTGGATGGGTGACGCCCTCGACCCATTAGCGAGGACT
ATTGAGAAAATCTCCCGAGGGACTGGCGATGATGGCCTTGCAGGGTAGGA
ACGTCATCAACGCGCTGGAGCAGCTCTCCATTCCCGTCTCGGAGTGCGCC
ACTCACCAACTCAGCACCGCCATCCTGTGGGGTCTCGTGATCAACGGGAC
CGCTAAGACTGGCAAAAACTCCGAGGCGAAGACTCTCGTCGTCAGGGTTG
CTGCTTTGGTCCGCATCTTCTCGCACTCCGCCGTCAACAACGATGCTCAT
GGTGCTCAAGACGCCCTCCGTGAGATTCTGCGCGAGGATCCCGCCCCGAG
GAAGGATGTGGAGGCCCTGGCCTGGATGGGTGACGCCCTCGACCCATTAG
CGAGGACTATTGAGAAAATCTCCCGAGGGACTGGCGATGATGGCCTTGCA
GGGTAG
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