mRNA_H-elongata_contig47535.11882.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47535.11882.1
Unique NamemRNA_H-elongata_contig47535.11882.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig47535.11882.1 vs. uniprot
Match: D8LG93_ECTSI (Calcium-dependent protein kinase 2 (PfCDPK2) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG93_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 3.660e-15
Identity = 72/209 (34.45%), Postives = 110/209 (52.63%), Query Frame = 3 
Query:  585 EFKVAMRKADAPEVKLARLRSFKSNSLPHGTI-SNVLKQLERTIEENGLPRNLSIES--------DETID-----------------------HHEAIMRASLVRCATKLIGKGHPRRSTVAVSDPASQRNMRDKFKINGAPT--LQEPSLDTSEGLEKSNEPSRVSRDTTQGMDGSEVMLSNIEEEPLPWG--DRAVIAASIDLKRLQ 1103
            EFK+AMRKADAP ++LA   +++S S+PH  + S+ ++ LERT+++    +  +++         +E+ID                         EA+M+ASL+RCA+ LI KG  RR+T+ VSDPA+Q+ +RD     GAP    + PS         S E +  +  T   +DG + M   +EEEP PWG  +  V AA+   K +Q
Sbjct:  510 EFKLAMRKADAPGLRLA---TYRSASMPHLNVNSSSIRHLERTVQDARKQKQAALQQFGTNGPTPEESIDDMDTSLDEXXXXXXXXXXXXXYNRREAVMQASLLRCASDLIEKGPFRRATLEVSDPAAQKALRDAAVYGGAPPPPSRGPSGPDPLARRLSEETAGSAGATQMAVDGWKSMPPQVEEEPHPWGRGEHMVTAATAVQKLVQ 715
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BLAST of mRNA_H-elongata_contig47535.11882.1 vs. uniprot
Match: A0A6H5JLX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLX9_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.670e-14
Identity = 73/212 (34.43%), Postives = 110/212 (51.89%), Query Frame = 3 
Query:  585 EFKVAMRKADAPEVKLARLRSFKSNSLPHGTI-SNVLKQLERTIEENGLPRNLSIES--------DETID--------------------------HHEAIMRASLVRCATKLIGKGHPRRSTVAVSDPASQRNMRDKFKINGAP--TLQEPSLDTSEGLEKSNEPSRVSRDTTQGMDGSEVMLSNIEEEPLPWG--DRAVIAASIDLKRLQ 1103
            EFK+AMRKADAP ++LA   +++S S+PH  + S+ ++QLERT+++    +  + +         +E++D                            EA+MRASL+RCA+ LI  G  RR+T+ +SDPA+++ +RD     GAP  T Q PS         S E +  +  T + +DG + M    EEEP PWG  D  V AA+   K +Q
Sbjct:  135 EFKLAMRKADAPGLRLA---TYRSASMPHLNVNSSSIRQLERTVQDARKQKQAARQQFGTSGPTPEESMDDMGTSLEXXXXXXXXXXXXXXXXXYNRREAVMRASLLRCASDLIQTGPFRRATLEISDPAAKKALRDAAAC-GAPHLTAQGPSGPDPLAWRPSEETAGSAGATQRVVDGWKSMPPQEEEEPHPWGSGDHMVTAATAVQKLMQ 342
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47535.11882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LG93_ECTSI3.660e-1534.45Calcium-dependent protein kinase 2 (PfCDPK2) n=1 T... [more]
A0A6H5JLX9_9PHAE2.670e-1434.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47535contigH-elongata_contig47535:657..4280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue2.6e-14
Seed eggNOG ortholog2880.D8LG93
KEGG koko:K13412
KEGG Pathwayko04626,ko05145,map04626,map05145
GOsGO:0000165,GO:0000187,GO:0001817,GO:0001932,GO:0001934,GO:0002218,GO:0002221,GO:0002224,GO:0002237,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002757,GO:0002758,GO:0002764,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006082,GO:0006464,GO:0006468,GO:0006690,GO:0006691,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006907,GO:0006950,GO:0006952,GO:0006954,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009931,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010468,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0010857,GO:0015630,GO:0016192,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019752,GO:0019899,GO:0019900,GO:0019901,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0031323,GO:0031324,GO:0031325,GO:0031329,GO:0031330,GO:0031347,GO:0031349,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0032496,GO:0032675,GO:0032680,GO:0033554,GO:0033674,GO:0033993,GO:0034097,GO:0035556,GO:0035924,GO:0036211,GO:0042221,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043436,GO:0043487,GO:0043488,GO:0043489,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044351,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0045859,GO:0045860,GO:0045934,GO:0045937,GO:0046777,GO:0048010,GO:0048255,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051019,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051338,GO:0051347,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070848,GO:0070887,GO:0070935,GO:0071310,GO:0071363,GO:0071704,GO:0071900,GO:0071902,GO:0080090,GO:0080134,GO:0080135,GO:0098657,GO:0140096,GO:1900034,GO:1901564,GO:1901568,GO:1901700,GO:1902369,GO:1902373,GO:1902531,GO:1902533,GO:1903311,GO:1903312,GO:1903555
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons3
Model size3044
Cds size507
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47535.11882.1prot_H-elongata_contig47535.11882.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47535 1476..2342 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930785.3242922-UTR-H-elongata_contig47535:656..7361622930785.3242922-UTR-H-elongata_contig47535:656..736Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47535 657..736 +
1691679569.171016-UTR-H-elongata_contig47535:656..7361691679569.171016-UTR-H-elongata_contig47535:656..736Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47535 657..736 +
1622930785.337926-UTR-H-elongata_contig47535:956..14751622930785.337926-UTR-H-elongata_contig47535:956..1475Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47535 957..1475 +
1691679569.1814973-UTR-H-elongata_contig47535:956..14751691679569.1814973-UTR-H-elongata_contig47535:956..1475Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47535 957..1475 +
1622930785.3915756-UTR-H-elongata_contig47535:2342..42801622930785.3915756-UTR-H-elongata_contig47535:2342..4280Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47535 2343..4280 +
1691679569.2043433-UTR-H-elongata_contig47535:2342..42801691679569.2043433-UTR-H-elongata_contig47535:2342..4280Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47535 2343..4280 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930785.3553739-CDS-H-elongata_contig47535:1475..15711622930785.3553739-CDS-H-elongata_contig47535:1475..1571Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47535 1476..1571 +
1691679569.1891735-CDS-H-elongata_contig47535:1475..15711691679569.1891735-CDS-H-elongata_contig47535:1475..1571Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47535 1476..1571 +
1622930785.376469-CDS-H-elongata_contig47535:1931..23421622930785.376469-CDS-H-elongata_contig47535:1931..2342Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47535 1932..2342 +
1691679569.1968055-CDS-H-elongata_contig47535:1931..23421691679569.1968055-CDS-H-elongata_contig47535:1931..2342Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47535 1932..2342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47535.11882.1

>prot_H-elongata_contig47535.11882.1 ID=prot_H-elongata_contig47535.11882.1|Name=mRNA_H-elongata_contig47535.11882.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=169bp
MRKADAPEVKLARLRSFKSNSLPHGTISNVLKQLERTIEENGLPRNLSIE
SDETIDHHEAIMRASLVRCATKLIGKGHPRRSTVAVSDPASQRNMRDKFK
INGAPTLQEPSLDTSEGLEKSNEPSRVSRDTTQGMDGSEVMLSNIEEEPL
PWGDRAVIAASIDLKRLQ*
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mRNA from alignment at H-elongata_contig47535:657..4280+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47535.11882.1 ID=mRNA_H-elongata_contig47535.11882.1|Name=mRNA_H-elongata_contig47535.11882.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3624bp|location=Sequence derived from alignment at H-elongata_contig47535:657..4280+ (Himanthalia elongata Himel1 dioecious)
GGGGAAGAGAGCGTTGGGCGAGAGGAGGCTCCGGATGGCGTTTGACCGGT
TGGATTACGACCACAGCGGCACCATCGACGGTAAGCATTAACCTCACCGA
GCATGTCGAGCTCTTCCTGTTGCTGTTTTTGAGCAGTGATTACGATTACG
GCTATGCCTAGAGTCTGTGGGTAGCGACATGGCTTCGCAAGCTCGGCGTC
ATTGAAAGCCATAGCCATGTCGGATGTCGATAATGACGATGTGCTCCATC
AAGGCCTTACCTTTCTGGTGTCGATTCTATTGGTGCTCTTGCGATGGCAG
CTAAAGACCTGAAGCTGATCGTGGGATCCGATTTTAAGGATGACGTGATC
GAGAAGATCTTCACGGAGTTCGACATCAACTCTGACGGCGAGATAGACTT
CGAGTGAGACACGGAGGGGTCGTTGCAGAGTCTGGCTTGGTAAGATGAGG
CAAGGCGTTCCAACTTTTTGAAGACGGCGTGTGAACCCGGGTGATTTTGC
TCGATGGCCATCCTGGAGATGAATACCGGTTTGTAGTAGCTTTGAATGAC
GCGCTTAATGCATTAGCTACAAATTTGGTTGGGTTTCATCCAGTATTCAT
CCAGTATTCATCCAGTATTTTGGTTGAGGTGTGGAGGTGTTGGCCGTGGT
CTATTAATAGAGCATTACAGCATTACGTCTGCAAGTCTCGAGGTTTCTCT
TCGGAACAACACAGGCCATGTAACGTCGACGCCACTTTCTCTAAATTTCT
AATATGTGTAATGTGCAATGAGTAACGTTTTTGAAATTTGCGTGGGGGAG
CAGGGAGTTCAAGGTGGCCATGCGAAAGGCAGATGCACCGGAGGTGAAGC
TGGCAAGGTTGAGATCGTTCAAGTCGAACTCTTTGCCACATGGCACCATC
AGCAATGTCCTCAAAGTGAGGCATTCGATAATTCCACTGGGGTATCGATG
TGGTCGTGTCGTGTCGAGTCGAGTCCTCGATGGGCCAGTAAAGAAGTACG
CGATGACCTTGGGAGGCACCTTGGGAGGCAATTGGCAATTTGCAATTCTA
TCTAACGATTACCGATTACACGACGCGGTCTTAGTTCCTTAGCTATTAAT
AGGTCTTAGTTAGGCATGGTGCGATCGTTCATGGCTGACTCGTACAGGTG
TACCAAGCGCAGGTCTGAAGTGGAGCATGTGGAACGTGAGTTGTTGCTGA
AATAGGGGTTGGGCACCTGTCTAACGAAGCTCTACCCTAACCTCCCTCTT
TTTTTGTGATGTGATTTGATGACAGCAACTGGAGCGGACGATCGAGGAAA
ATGGTCTCCCTCGGAACTTGAGTATCGAAAGTGACGAAACCATCGACCAC
CACGAGGCTATCATGCGCGCGTCCCTTGTTCGCTGCGCTACTAAGCTCAT
TGGGAAGGGACATCCCCGAAGATCCACCGTGGCGGTGTCTGATCCGGCCT
CTCAGCGGAATATGAGAGACAAGTTCAAGATCAATGGGGCGCCGACATTG
CAAGAGCCGAGCCTCGATACGTCTGAAGGGTTGGAGAAATCCAATGAACC
GTCGAGAGTATCACGGGATACTACGCAGGGCATGGATGGGTCAGAGGTAA
TGCTATCGAATATCGAAGAAGAGCCTTTACCGTGGGGGGATCGGGCTGTG
ATCGCCGCCTCGATAGACCTGAAGCGGCTGCAGTAGTACAGTAGTACAGT
AGAGGGATCCTGTCACACTGCCACACCAAAAAAAAATAGTTTTCAGTACC
AGTTTTTGTGGCACACTCGGAGACGGAGACGGAGACGGCGATCGTGATAG
ACAAAAGGCAGTCGGCAGTTTATTTTTTATTTTTTATTTTACGGTTTTAG
TCTCGGGTGGGTTGTTGGTGAATGGTTTGACTAACTAGCCATCGATCGAT
TGGACTGCATCGTGTCGGGGCTTGTAGAGTCCTGGATATACTCATGAATG
TTGGTGACATTTTTATGGGATTTGTCGATAGTGTATTTTTACCCATCCCC
CTATTCGATGACAGTCCTGAGGCGTGACCGCTTCGACAGAAAGTACTCTA
AATACTTGTGATACATGCGGCGTCGGCATAGCTAGGGGCTAGGGGACGGG
GTCTCAAGCTACGAAGGCTAAATATGATTTTAAGCCGCCGCGAATACTGG
CGGCAGGTCCTACTGTCTGTTTGAATGTATCGTTCCGGGAAATTGCTGCT
TGTACTTGTAGACAAAAGGTTAATCTGATTGGTCAAGCATCTGGAAATGA
CAGTCTCGGACATGCCTCACCCGTGGCGATACCCAGTGCACAGTAACCCC
ACCCAACTTGGAGTTATTTTAGGATTTGCGTTAGCGCTAAGGCCGGGGCG
GGTACTGTGTGGTCGAGATGCAGGAAACCCCAAAAGTAAAAACGTGCGCA
TCTCACTCCCAAAACAAAACGTAAGGGTCTTCAATGTCAAACAGTGGCTA
TGGATCATGGGAGTACATTATAAACACGAAAGCAACTAACTCGTGAACAT
GATCCAGGAGGTGAAACTTCCCCCCTCCATCCCTTCCGCAATTCAACCAT
GCCATCTTCGTCATGTTTTGCACAAATAATGTTGAATTGTGTGTGCTGTC
GGCGGCGATTTGACGAGCTCTTCTATTTAATATCATAGCCTCAGTAATGG
GCGCTAATAGGTCTAATGATGTTGCAAACTAGAGCTGCGCACCTCGTGCA
CAGCTGCAGTAGTGGATCTATCCATGCTCGAGGAGCACGATTATGTGGTT
CAGTACTTCGGAATATTTTCACACGGAGTGTGTGTGTCATGTGTTCCGTG
TGCAATCGCGCCACGCTCGGGTATGATACATTTTAGGGGGAGATTTGGAG
CCGGATTATATACTGGCTCTTGCTACTCGTGATCTTGCCGCCGTTTGATG
CCACTTGAACGGAACTAAATAGTGGTGTCGAGGTTTGTACGATGTGCGCC
ACGCCTGGCCTGTCATGATGGCATGATGGCATGCAAAGTAAAATCGATAC
GTTAATAAATGGAAAACGGTGTGCATCAAGTTCCTTAGGGAGTGTGTCTG
TTCAGCAGTTTATGGAAAATAATGTGTTTTCCGTTCGCTCCTCGCTCCTG
CTTTCCCTTTGCATGTCTTCCAAAACGAACTGTCGCGATTTTTTAGGACT
GTCCCAGATGCTTATTATTTCTTTACATCGAGGAGAATGAATGTATACAT
TATACATTGAGCAAAATCGGCTGTTAGTGATGCAGCGGTGAGCGTTCGGA
TTTTTTTATGAATGGGAGGATTCAAAAGTGGTTTCCAAGATGTATTATTT
ATAATGTTTGTATTGTATGAATAAGGTATACCGTACGTTCTGTATGGTTT
AGGGCAACGACCAAAAAAGGTATTCCATCAACAAACGCGACTGATTTTTA
CACCCTGCATGTCGAGCAGTGGTGTTGTGGATTGTATTGACAGAGCTAAG
GTGAGCCTTGTTTTCCCGTTCGATTTATTATAGCATACATTTCGACTTAC
TATAGTACACATTTCGACTTACTATAATATCATACATTTCGACTTGCTAT
AATAGCATACATTTCGACTTACTATATGGACACCCTAATGAAGACGGGAA
GCGAGAGCATCGAGGCGATCATGC
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Coding sequence (CDS) from alignment at H-elongata_contig47535:657..4280+

>mRNA_H-elongata_contig47535.11882.1 ID=mRNA_H-elongata_contig47535.11882.1|Name=mRNA_H-elongata_contig47535.11882.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1014bp|location=Sequence derived from alignment at H-elongata_contig47535:657..4280+ (Himanthalia elongata Himel1 dioecious)
ATGCGAAAGGCAGATGCACCGGAGGTGAAGCTGGCAAGGTTGAGATCGTT
CAAGTCGAACTCTTTGCCACATGGCACCATCAGCAATGTCCTCAAAATGC
GAAAGGCAGATGCACCGGAGGTGAAGCTGGCAAGGTTGAGATCGTTCAAG
TCGAACTCTTTGCCACATGGCACCATCAGCAATGTCCTCAAACAACTGGA
GCGGACGATCGAGGAAAATGGTCTCCCTCGGAACTTGAGTATCGAAAGTG
ACGAAACCATCGACCACCACGAGGCTATCATGCGCGCGTCCCTTGTTCGC
TGCGCTACTAAGCTCATTGGGAAGGGACATCCCCGAAGATCCACCGTGGC
GGTGTCTGATCCGGCCTCTCAGCGGAATATGAGAGACAAGTTCAAGATCA
ATGGGGCGCCGACATTGCAAGAGCCGAGCCTCGATACGTCTGAAGGGTTG
GAGAAATCCAATGAACCGTCGAGAGTATCACGGGATACTACGCAGGGCAT
GGATGGGTCAGAGGTAATGCTATCGAATATCGAAGAAGAGCCTTTACCGT
GGGGGGATCGGGCTGTGATCGCCGCCTCGATAGACCTGAAGCGGCTGCAG
TAGCAACTGGAGCGGACGATCGAGGAAAATGGTCTCCCTCGGAACTTGAG
TATCGAAAGTGACGAAACCATCGACCACCACGAGGCTATCATGCGCGCGT
CCCTTGTTCGCTGCGCTACTAAGCTCATTGGGAAGGGACATCCCCGAAGA
TCCACCGTGGCGGTGTCTGATCCGGCCTCTCAGCGGAATATGAGAGACAA
GTTCAAGATCAATGGGGCGCCGACATTGCAAGAGCCGAGCCTCGATACGT
CTGAAGGGTTGGAGAAATCCAATGAACCGTCGAGAGTATCACGGGATACT
ACGCAGGGCATGGATGGGTCAGAGGTAATGCTATCGAATATCGAAGAAGA
GCCTTTACCGTGGGGGGATCGGGCTGTGATCGCCGCCTCGATAGACCTGA
AGCGGCTGCAGTAG
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