mRNA_H-elongata_contig47524.11881.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47524.11881.1
Unique NamemRNA_H-elongata_contig47524.11881.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47524.11881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47524contigH-elongata_contig47524:2114..2425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size312
Cds size312
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930785.2700849-CDS-H-elongata_contig47524:2113..24251622930785.2700849-CDS-H-elongata_contig47524:2113..2425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47524 2114..2425 +
1691679569.1591375-CDS-H-elongata_contig47524:2113..24251691679569.1591375-CDS-H-elongata_contig47524:2113..2425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47524 2114..2425 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47524.11881.1prot_H-elongata_contig47524.11881.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47524 2114..2425 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47524.11881.1

>prot_H-elongata_contig47524.11881.1 ID=prot_H-elongata_contig47524.11881.1|Name=mRNA_H-elongata_contig47524.11881.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
MTIDTIETLDRRSSIGIGKDRQDSDFVHPSSLFLIESQERVCHRTDNCPR
DPVACASKYRRSLENAQLQPNSSGAPAGLTRLPWLYSSRVDVAASIAAAK
QVW*
back to top

mRNA from alignment at H-elongata_contig47524:2114..2425+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47524.11881.1 ID=mRNA_H-elongata_contig47524.11881.1|Name=mRNA_H-elongata_contig47524.11881.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=312bp|location=Sequence derived from alignment at H-elongata_contig47524:2114..2425+ (Himanthalia elongata Himel1 dioecious)
ATGACAATCGACACGATTGAAACATTAGACAGGAGGAGCAGCATCGGCAT
CGGCAAAGACAGACAAGATTCGGATTTCGTGCACCCCTCTTCGCTCTTTT
TGATTGAGAGTCAAGAGAGGGTCTGCCACCGTACAGACAATTGCCCAAGA
GACCCTGTGGCGTGCGCTTCAAAATATCGAAGAAGCTTGGAAAACGCGCA
GTTGCAGCCGAATTCTTCAGGCGCGCCCGCGGGATTGACACGGCTGCCAT
GGCTCTACAGCAGTCGAGTCGACGTAGCCGCCTCTATAGCAGCAGCAAAA
CAGGTTTGGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig47524:2114..2425+

>mRNA_H-elongata_contig47524.11881.1 ID=mRNA_H-elongata_contig47524.11881.1|Name=mRNA_H-elongata_contig47524.11881.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig47524:2114..2425+ (Himanthalia elongata Himel1 dioecious)
ATGACAATCGACACGATTGAAACATTAGACAGGAGGAGCAGCATCGGCAT
CGGCAAAGACAGACAAGATTCGGATTTCGTGCACCCCTCTTCGCTCTTTT
TGATTGAGAGTCAAGAGAGGGTCTGCCACCGTACAGACAATTGCCCAAGA
GACCCTGTGGCGTGCGCTTCAAAATATCGAAGAAGCTTGGAAAACGCGCA
GTTGCAGCCGAATTCTTCAGGCGCGCCCGCGGGATTGACACGGCTGCCAT
GGCTCTACAGCAGTCGAGTCGACGTAGCCGCCTCTATAGCAGCAGCAAAA
CAGGTTTGGTAAATGACAATCGACACGATTGAAACATTAGACAGGAGGAG
CAGCATCGGCATCGGCAAAGACAGACAAGATTCGGATTTCGTGCACCCCT
CTTCGCTCTTTTTGATTGAGAGTCAAGAGAGGGTCTGCCACCGTACAGAC
AATTGCCCAAGAGACCCTGTGGCGTGCGCTTCAAAATATCGAAGAAGCTT
GGAAAACGCGCAGTTGCAGCCGAATTCTTCAGGCGCGCCCGCGGGATTGA
CACGGCTGCCATGGCTCTACAGCAGTCGAGTCGACGTAGCCGCCTCTATA
GCAGCAGCAAAACAGGTTTGGTAA
back to top