mRNA_H-elongata_contig47518.11880.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47518.11880.1
Unique NamemRNA_H-elongata_contig47518.11880.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig47518.11880.1 vs. uniprot
Match: D7G0V5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V5_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 5.670e-10
Identity = 38/82 (46.34%), Postives = 44/82 (53.66%), Query Frame = 3 
Query:    9 AERFVGRALSLLKLGASETFADRWGDTMHKVYCRALHAKKSDASIPEGGIQTSSLQWSTGRLAGGDPRVGGAFRSTGIFPMP 254
            AERFVG+AL LLKLG+S  F  RW + +HKVY   L AK  DA+     I             GG      AF STG+FPMP
Sbjct: 1010 AERFVGKALGLLKLGSSPAFVRRWEEAIHKVYRTTLQAK-GDAATATNPIMAGGSGSQASTAIGGR-----AFLSTGLFPMP 1085
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47518.11880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0V5_ECTSI5.670e-1046.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47518contigH-elongata_contig47518:1471..2033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size283
Cds size192
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47518.11880.1prot_H-elongata_contig47518.11880.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47518 1560..2031 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930785.1688964-UTR-H-elongata_contig47518:1470..15591622930785.1688964-UTR-H-elongata_contig47518:1470..1559Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47518 1471..1559 +
1691679569.1122496-UTR-H-elongata_contig47518:1470..15591691679569.1122496-UTR-H-elongata_contig47518:1470..1559Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47518 1471..1559 +
1622930785.22705-UTR-H-elongata_contig47518:2031..20331622930785.22705-UTR-H-elongata_contig47518:2031..2033Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47518 2032..2033 +
1691679569.1500027-UTR-H-elongata_contig47518:2031..20331691679569.1500027-UTR-H-elongata_contig47518:2031..2033Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47518 2032..2033 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930785.1935847-CDS-H-elongata_contig47518:1559..15681622930785.1935847-CDS-H-elongata_contig47518:1559..1568Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47518 1560..1568 +
1691679569.1259992-CDS-H-elongata_contig47518:1559..15681691679569.1259992-CDS-H-elongata_contig47518:1559..1568Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47518 1560..1568 +
1622930785.2118423-CDS-H-elongata_contig47518:1848..20311622930785.2118423-CDS-H-elongata_contig47518:1848..2031Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47518 1849..2031 +
1691679569.1400626-CDS-H-elongata_contig47518:1848..20311691679569.1400626-CDS-H-elongata_contig47518:1848..2031Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47518 1849..2031 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47518.11880.1

>prot_H-elongata_contig47518.11880.1 ID=prot_H-elongata_contig47518.11880.1|Name=mRNA_H-elongata_contig47518.11880.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MHKVYCRALHAKKSDASIPEGGIQTSSLQWSTGRLAGGDPRVGGAFRSTG
IFPMPSGDKAIDN*
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mRNA from alignment at H-elongata_contig47518:1471..2033+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47518.11880.1 ID=mRNA_H-elongata_contig47518.11880.1|Name=mRNA_H-elongata_contig47518.11880.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=563bp|location=Sequence derived from alignment at H-elongata_contig47518:1471..2033+ (Himanthalia elongata Himel1 dioecious)
CAGCAGCAGCGGAGAGATTTGTCGGTCGGGCTCTAAGCCTCCTCAAGCTC
GGCGCTAGCGAGACCTTCGCGGATCGCTGGGGGGATACCATGCACAAGGT
ATTTTATAGTGTAGCGCTGAACCATTCTTCCTAGGATAAGGAAGTATTTG
AGAGGAATACGAACCGATAGTGACGGATAAATAGAGAAAATTGTATTTCC
TGTGTTCTACAATAATATCTGTACGCGGACCATCGGTCTAATGAAAATTT
CGTCGATTATACAATAGAAAAATCTACTGAGTATCGATTTCTTTCACGTG
TCAAATGCATCTACTATGTGCGACCTGAAAAATCTCTCCCTATATGCGAA
TTACAAATATTATCGTGTTGTTTTCTAGGTTTACTGCAGGGCTCTGCACG
CGAAGAAGAGCGACGCCTCAATACCCGAGGGTGGAATCCAAACGTCATCA
CTACAATGGAGCACGGGAAGATTGGCTGGTGGAGACCCGAGAGTAGGCGG
GGCCTTTCGCTCCACCGGCATATTCCCAATGCCTTCGGGCGATAAAGCAA
TTGACAACTAGGG
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Coding sequence (CDS) from alignment at H-elongata_contig47518:1471..2033+

>mRNA_H-elongata_contig47518.11880.1 ID=mRNA_H-elongata_contig47518.11880.1|Name=mRNA_H-elongata_contig47518.11880.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig47518:1471..2033+ (Himanthalia elongata Himel1 dioecious)
ATGCACAAGATGCACAAGGTTTACTGCAGGGCTCTGCACGCGAAGAAGAG
CGACGCCTCAATACCCGAGGGTGGAATCCAAACGTCATCACTACAATGGA
GCACGGGAAGATTGGCTGGTGGAGACCCGAGAGTAGGCGGGGCCTTTCGC
TCCACCGGCATATTCCCAATGCCTTCGGGCGATAAAGCAATTGACAACTA
GGTTTACTGCAGGGCTCTGCACGCGAAGAAGAGCGACGCCTCAATACCCG
AGGGTGGAATCCAAACGTCATCACTACAATGGAGCACGGGAAGATTGGCT
GGTGGAGACCCGAGAGTAGGCGGGGCCTTTCGCTCCACCGGCATATTCCC
AATGCCTTCGGGCGATAAAGCAATTGACAACTAG
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