mRNA_H-elongata_contig47501.11876.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47501.11876.1
Unique NamemRNA_H-elongata_contig47501.11876.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig47501.11876.1 vs. uniprot
Match: D8LF93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF93_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 1.060e-25
Identity = 50/68 (73.53%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:    1 QVCEMWWTQERPGGEHLVTQLLPLMLVRSLDEDAKEADVKRVFGMRTALLLLDFDDESCESLRVLLLR 204
            +VCEMWWTQ+RPG EHLV  L+P+MLVRSL  DAKEADVKR+ G++ ALLLLDF+DES +SLR LLLR
Sbjct:  221 KVCEMWWTQDRPGAEHLVVHLIPVMLVRSLSPDAKEADVKRMHGLKGALLLLDFEDESSDSLRALLLR 288
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BLAST of mRNA_H-elongata_contig47501.11876.1 vs. uniprot
Match: A0A6H5JG90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG90_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 9.330e-25
Identity = 49/68 (72.06%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    1 QVCEMWWTQERPGGEHLVTQLLPLMLVRSLDEDAKEADVKRVFGMRTALLLLDFDDESCESLRVLLLR 204
            +VCEMWWTQ+RPG EHLV  L+P+MLVRSL  DAKEADVKR+  ++ ALLLLDF+DES +SLR LLLR
Sbjct:   94 KVCEMWWTQDRPGAEHLVVHLIPVMLVRSLSPDAKEADVKRMHAVKGALLLLDFEDESSDSLRALLLR 161
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BLAST of mRNA_H-elongata_contig47501.11876.1 vs. uniprot
Match: A0A7S1CM40_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CM40_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 8.580e-18
Identity = 41/68 (60.29%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:    1 QVCEMWWTQERPGGEHLVTQLLPLMLVRSLDEDAKEADVKRVFGMRTALLLLDFDDESCESLRVLLLR 204
            + CE WWTQ R G E LV QLLP +L+RSL+E A   DVKRV+ +R+A  LLDF+DES +SL+ LLLR
Sbjct:   24 KACERWWTQARAGREGLVVQLLPTLLMRSLEEGAAPGDVKRVYAVRSAFELLDFEDESIDSLKELLLR 91
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BLAST of mRNA_H-elongata_contig47501.11876.1 vs. uniprot
Match: W7TM42_9STRA (Condensin-2 complex subunit g2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM42_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.020e-15
Identity = 37/68 (54.41%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    1 QVCEMWWTQERPGGEHLVTQLLPLMLVRSLDEDAKEADVKRVFGMRTALLLLDFDDESCESLRVLLLR 204
            +VCE WW Q R G E LV Q +P ++ RSL+EDA+EA VKRV+ +R ALLLLD+++E+    R LLL+
Sbjct:  173 RVCEQWWKQGRGGAEFLVAQTVPYLVARSLEEDAREALVKRVYALRGALLLLDYEEEATGPFRELLLQ 240
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BLAST of mRNA_H-elongata_contig47501.11876.1 vs. uniprot
Match: A0A3S3MQR0_9MAGN (Condensin-2 complex subunit G2 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3MQR0_9MAGN)

HSP 1 Score: 75.5 bits (184), Expect = 2.440e-14
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    4 VCEMWWTQERPGGEHLVTQLLPLMLVRSLDEDAKEADVKRVFGMRTALLLLDFDDESCESLRVLLLR 204
            +CE WW +  PG E L++QLLP +L RSL E  K+ DV+RV  +R AL LLDFDDES E L++LL+R
Sbjct:  153 LCEEWWKEHLPGRETLISQLLPFLLSRSLTE-GKKVDVRRVCLLRDALSLLDFDDESIEDLKLLLVR 218
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BLAST of mRNA_H-elongata_contig47501.11876.1 vs. uniprot
Match: A0A2R5GJ73_9STRA (Condensin-2 complex subunit G2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GJ73_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 4.550e-14
Identity = 35/68 (51.47%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    1 QVCEMWWTQERPGGEHLVTQLLPLMLVRSLDEDAKEADVKRVFGMRTALLLLDFDDESCESLRVLLLR 204
            ++CE WW  + P    LVT+LLP++++ SL++DAK ADVKRVF +R  L LLD +D+S  +L+ LLLR
Sbjct:  171 RICEQWWVLDLPDKGQLVTRLLPVLIIYSLEDDAKRADVKRVFIVRKMLGLLDLEDDSSLTLKQLLLR 238
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BLAST of mRNA_H-elongata_contig47501.11876.1 vs. uniprot
Match: K0S5M2_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S5M2_THAOC)

HSP 1 Score: 74.7 bits (182), Expect = 4.560e-14
Identity = 36/67 (53.73%), Postives = 51/67 (76.12%), Query Frame = 1 
Query:    4 VCEMWWTQERPGGEHLVTQLLPLMLVRSLDEDAKEADVKRVFGMRTALLLLDFDDESCESLRVLLLR 204
            VCE WW       E LVTQL+PL+LV+SLD+++++ DVKR++ +R+A+ LLDF+DES  SL+  LLR
Sbjct:  175 VCERWWHGNFDDREQLVTQLVPLLLVKSLDDNSEKNDVKRLYSIRSAIDLLDFEDESITSLKNHLLR 241
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BLAST of mRNA_H-elongata_contig47501.11876.1 vs. uniprot
Match: A0A3M6U8W1_POCDA (Uncharacterized protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6U8W1_POCDA)

HSP 1 Score: 70.9 bits (172), Expect = 6.180e-13
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:    1 QVCEMWWTQERPGGEHLVTQLLPLMLVRSLDEDAKEADVKRVFGMRTALLLLDFDDESCESLRVLL 198
            Q+CE+W+  E  G E L+TQ  P +++RSL      +DVKRV+G+R  LLL+DFDD+S ESL+ LL
Sbjct:   16 QLCELWFLNELEGKEELITQTFPYLIIRSLGRGLV-SDVKRVWGLRQCLLLMDFDDDSSESLKQLL 80
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BLAST of mRNA_H-elongata_contig47501.11876.1 vs. uniprot
Match: A0A0L0D587_THETB (Condensin-2 complex subunit G2 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D587_THETB)

HSP 1 Score: 71.2 bits (173), Expect = 7.560e-13
Identity = 36/66 (54.55%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:    7 CEMWWTQERPGGEHLVTQLLPLMLVRSLDEDAKEADVKRVFGMRTALLLLDFDDESCESLRVLLLR 204
            CE WWT  +PG E LV Q L  +LVR L       DVKRV  MRTA  LLDF+ ES ES++ L+LR
Sbjct:  117 CETWWTHAKPGREALVPQTLCYLLVRGLSPGGTPGDVKRVAAMRTAFELLDFEHESTESIKDLILR 182
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BLAST of mRNA_H-elongata_contig47501.11876.1 vs. uniprot
Match: A0A2P6RWX1_ROSCH (Putative condensin-2 complex subunit G2 n=4 Tax=Rosoideae TaxID=171638 RepID=A0A2P6RWX1_ROSCH)

HSP 1 Score: 71.2 bits (173), Expect = 7.570e-13
Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:    4 VCEMWWTQERPGGEHLVTQLLPLMLVRSLDEDAKEADVKRVFGMRTALLLLDFDDESCESLRVLLLR 204
            +CE WW +E PG E L++Q LP +L RSL  + K+AD+ RV+ +R A    DF+DES E L++LL+R
Sbjct:  174 LCEQWWKEELPGRESLISQSLPFLLSRSLTLN-KKADIHRVYALREAFTCFDFEDESIEDLKLLLIR 239
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47501.11876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF93_ECTSI1.060e-2573.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JG90_9PHAE9.330e-2572.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1CM40_9STRA8.580e-1860.29Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
W7TM42_9STRA2.020e-1554.41Condensin-2 complex subunit g2 n=2 Tax=Monodopsida... [more]
A0A3S3MQR0_9MAGN2.440e-1456.72Condensin-2 complex subunit G2 n=1 Tax=Cinnamomum ... [more]
A0A2R5GJ73_9STRA4.550e-1451.47Condensin-2 complex subunit G2 n=1 Tax=Hondaea fer... [more]
K0S5M2_THAOC4.560e-1453.73Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A3M6U8W1_POCDA6.180e-1351.52Uncharacterized protein n=1 Tax=Pocillopora damico... [more]
A0A0L0D587_THETB7.560e-1354.55Condensin-2 complex subunit G2 n=1 Tax=Thecamonas ... [more]
A0A2P6RWX1_ROSCH7.570e-1349.25Putative condensin-2 complex subunit G2 n=4 Tax=Ro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47501contigH-elongata_contig47501:109..969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue3e-19
Seed eggNOG ortholog2880.D8LF93
Preferred nameNCAPG2
KEGG koko:K11492
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000793,GO:0000796,GO:0000819,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0001932,GO:0001934,GO:0002262,GO:0002376,GO:0002520,GO:0002682,GO:0002683,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010469,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0016043,GO:0016070,GO:0016604,GO:0016607,GO:0018130,GO:0019220,GO:0019222,GO:0019438,GO:0022402,GO:0023051,GO:0023056,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033674,GO:0034101,GO:0034641,GO:0034645,GO:0034654,GO:0035064,GO:0040007,GO:0042325,GO:0042327,GO:0042393,GO:0042592,GO:0043009,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043425,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044815,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045646,GO:0045647,GO:0045859,GO:0045860,GO:0045937,GO:0046483,GO:0048285,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048584,GO:0048589,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050730,GO:0050731,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051093,GO:0051171,GO:0051173,GO:0051174,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051276,GO:0051338,GO:0051347,GO:0060255,GO:0061097,GO:0061098,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:0098772,GO:0098813,GO:0140014,GO:0140030,GO:0140034,GO:1901360,GO:1901362,GO:1901576,GO:1903047,GO:1903706,GO:1903707,GO:2000026,GO:2000273
EggNOG free text desc.inner cell mass cell proliferation
EggNOG OGsKOG1949@1,KOG1949@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size204
Cds size192
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47501.11876.1prot_H-elongata_contig47501.11876.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47501 109..957 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930784.792511-CDS-H-elongata_contig47501:108..1811622930784.792511-CDS-H-elongata_contig47501:108..181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47501 109..181 -
1691679569.0088725-CDS-H-elongata_contig47501:108..1811691679569.0088725-CDS-H-elongata_contig47501:108..181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47501 109..181 -
1622930784.8105552-CDS-H-elongata_contig47501:838..9571622930784.8105552-CDS-H-elongata_contig47501:838..957Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47501 839..957 -
1691679569.0217812-CDS-H-elongata_contig47501:838..9571691679569.0217812-CDS-H-elongata_contig47501:838..957Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47501 839..957 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930784.8223085-UTR-H-elongata_contig47501:957..9691622930784.8223085-UTR-H-elongata_contig47501:957..969Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47501 958..969 -
1691679569.031049-UTR-H-elongata_contig47501:957..9691691679569.031049-UTR-H-elongata_contig47501:957..969Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47501 958..969 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47501.11876.1

>prot_H-elongata_contig47501.11876.1 ID=prot_H-elongata_contig47501.11876.1|Name=mRNA_H-elongata_contig47501.11876.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MWWTQERPGGEHLVTQLLPLMLVRSLDEDAKEADVKRVFGMRTALLLLDF
DDESCESLRVLLLR
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mRNA from alignment at H-elongata_contig47501:109..969-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47501.11876.1 ID=mRNA_H-elongata_contig47501.11876.1|Name=mRNA_H-elongata_contig47501.11876.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=861bp|location=Sequence derived from alignment at H-elongata_contig47501:109..969- (Himanthalia elongata Himel1 dioecious)
CAGGTGTGCGAGATGTGGTGGACGCAAGAAAGGCCCGGCGGAGAGCACCT
CGTGACGCAACTACTGCCATTGATGCTGGTCCGGTCCCTCGACGAGGACG
CGAAGGAGGCCGACGTCAAGCGGGTCTTCGGGTGAGCAACAGCGATAGCG
ACAAGCAACAGCAGTAATAGCCATAAACGCAGCGGTGACGGGCACGGGGA
GGGTATCAGCCATCTTCTGAACGTTGGATGTTTTTGGTTTGTGCTTTATG
AACTCCCCATCCCCTGTCGGACAGTCGTCTTACACCTTGGTGTATTGCTC
GTGAACTCTCTTATACTCAGCATTACAACCCAAACAGCCAGGCAACAGTG
CCGATGCCCAAGACATGTGTCGGGGTTGGATCACGGACGCTCGCTTGAGA
ACAAAGCGTTTAATTCAGTTCCATGAGCTGAGCAGAGTGCTTTTTCAAAC
TCGTGCATGAATCAATACCTCCCCCCCTCCTTCTTGGGAAGGAGATACTC
CATACAGTGTAATCTGTGAACTTAGAGGCCTCGCCCTCCCCTTTGTGAAA
AGACACGACATAACATGACACCCCTCATTTTTTACCGCTCCAATAGGATA
AGGGTCGTCGACAAAGCAAGAAGGTCTCGAAGTTCACGCGCTAATGAATT
TGTTGATCTGGGTTTGGCATACGTGTTGCTATTGTTACTGTTGTCGTTGA
TATGATGATATATGATATATGATCGATACCGTTGCCCTTTGACTTTTGGC
CCTCGGTTTGCTCTTGACCCCGTGGTAATGTTTCACAGAATGCGGACCGC
ACTGCTTCTACTGGATTTTGATGATGAAAGTTGCGAGAGCCTCAGGGTGC
TGCTGCTCAGG
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Coding sequence (CDS) from alignment at H-elongata_contig47501:109..969-

>mRNA_H-elongata_contig47501.11876.1 ID=mRNA_H-elongata_contig47501.11876.1|Name=mRNA_H-elongata_contig47501.11876.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig47501:109..969- (Himanthalia elongata Himel1 dioecious)
ATGTGGTGGACGCAAGAAAGGCCCGGCGGAGAGCACCTCGTGACGCAACT
ACTGCCATTGATGCTGGTCCGGTCCCTCGACGAGGACGCGAAGGAGGCCG
ACGTCAAGCGGGTCTTCGGATGTGGTGGACGCAAGAAAGGCCCGGCGGAG
AGCACCTCGTGACGCAACTACTGCCATTGATGCTGGTCCGGTCCCTCGAC
GAGGACGCGAAGGAGGCCGACGTCAAGCGGGTCTTCGGAATGCGGACCGC
ACTGCTTCTACTGGATTTTGATGATGAAAGTTGCGAGAGCCTCAGGGTGC
TGCTGCTCAGGAATGCGGACCGCACTGCTTCTACTGGATTTTGATGATGA
AAGTTGCGAGAGCCTCAGGGTGCTGCTGCTCAGG
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