mRNA_H-elongata_contig4745.11867.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4745.11867.1
Unique NamemRNA_H-elongata_contig4745.11867.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig4745.11867.1 vs. uniprot
Match: D7G572_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G572_ECTSI)

HSP 1 Score: 263 bits (672), Expect = 1.640e-80
Identity = 126/175 (72.00%), Postives = 155/175 (88.57%), Query Frame = 1 
Query:    1 KVFDFFNREVTKANFYQTKEVFTVSQELLSVLDEARECLELLVNWCDLCLPANEQAFAESNRIKIQDFQDYLASGMQSVVSATSEINTQLEKRAQTLRSLFTTKEVLPENYEGWSRMHRDMLVHTETSAYLYVAKTWEKVLEDYLLFYNYWKTNLKNNPIVFDNDGKGGSGHYFG 525
            KVF++F++ VTKAN +Q KEV++VSQ+LLSVLDEARE LELLVNWCDLCLPANEQAFAE++RIKIQ FQDYL++G+ SVVS T++INTQL+KRAQTLRSLF+TK+VLPEN EGW R+HR+MLVH E +AYL  A +WEK+LEDYLL+YNY+K NLK++ IVF ++GKGG   YFG
Sbjct:  146 KVFEYFDKAVTKANCFQVKEVYSVSQDLLSVLDEARETLELLVNWCDLCLPANEQAFAEAHRIKIQHFQDYLSAGLSSVVSETADINTQLDKRAQTLRSLFSTKDVLPENQEGWYRLHREMLVHHEVNAYLSAATSWEKLLEDYLLYYNYYKMNLKDSTIVFQSEGKGGGNDYFG 320
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BLAST of mRNA_H-elongata_contig4745.11867.1 vs. uniprot
Match: A0A835YMR0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMR0_9STRA)

HSP 1 Score: 242 bits (618), Expect = 2.160e-73
Identity = 116/176 (65.91%), Postives = 145/176 (82.39%), Query Frame = 1 
Query:    1 KVFDFFNREVTKANFYQTKEVFTVSQELLSVLDEARECLELLVNWCDLCLPANEQAFAESNRIKIQDFQDYLASGMQSVVSATSEINTQLEKRAQTLRSLFTTKEVLPENYEGWSRMHRDMLVHTETSAYLYVAKTWEKVLEDYLLFYNYWKTNLKNNPIVFDNDGKGGSGH-YFG 525
            KVF FFN  V++ N +QT EVF VS+E+LSVLDE+RE LEL+ NWCDLCLPANE AFAE++R+K+QDFQDYL+ G+  +V++ +E+N+QLEKRAQTL+ LFTTK+VLPEN  GW R HRD+LVH+ET+AYL VAK WEKVLEDY+L+YNYWKTN+K+  + F N GK   G  YFG
Sbjct:   78 KVFAFFNSHVSQPNSFQTDEVFRVSEEVLSVLDESREQLELVTNWCDLCLPANETAFAEAHRLKLQDFQDYLSGGVTGIVNSINEVNSQLEKRAQTLQLLFTTKDVLPENRTGWIRAHRDLLVHSETNAYLQVAKIWEKVLEDYVLYYNYWKTNIKDGDLAFGNQGKSERGSDYFG 253
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BLAST of mRNA_H-elongata_contig4745.11867.1 vs. uniprot
Match: A0A836C7X8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7X8_9STRA)

HSP 1 Score: 233 bits (595), Expect = 4.280e-70
Identity = 113/176 (64.20%), Postives = 143/176 (81.25%), Query Frame = 1 
Query:    1 KVFDFFNREVTKANFYQTKEVFTVSQELLSVLDEARECLELLVNWCDLCLPANEQAFAESNRIKIQDFQDYLASGMQSVVSATSEINTQLEKRAQTLRSLFTTKEVLPENYEGWSRMHRDMLVHTETSAYLYVAKTWEKVLEDYLLFYNYWKTNLKNNPIVFDNDGKGG-SGHYFG 525
            KVF FF+  +T+A  YQT +VF +S+E+LSVLDE RE LELL+NWCDLCLPANE AFAE+ RIKIQDFQ+YL+ G+  + ++T+E+N QLEKRA+TL+ LFTTK+VLPEN  GW + HRD+LVH ET+AYL +AK WEKVLEDY+L++NYWKTNLK+  + F + GKG   G YFG
Sbjct:   69 KVFAFFDANITEATSYQTDQVFKLSEEVLSVLDECRELLELLMNWCDLCLPANETAFAEALRIKIQDFQEYLSGGVTGLANSTNEVNLQLEKRARTLQLLFTTKDVLPENRAGWIKAHRDLLVHCETNAYLRMAKIWEKVLEDYVLYFNYWKTNLKDGDLAFAHMGKGERGGDYFG 244
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BLAST of mRNA_H-elongata_contig4745.11867.1 vs. uniprot
Match: A0A836CFQ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFQ5_9STRA)

HSP 1 Score: 177 bits (449), Expect = 2.280e-48
Identity = 84/174 (48.28%), Postives = 120/174 (68.97%), Query Frame = 1 
Query:    1 KVFDFFNREVTKANFYQTKEVFTVSQELLSVLDEARECLELLVNWCDLCLPANEQAFAESNRIKIQDFQDYLASGMQSVVSATSEINTQLEKRAQTLRSLFTTKEVLPENYEGWSRMHRDMLVHTETSAYLYVAKTWEKVLEDYLLFYNYWKTNLKNNPIVFDNDGKGGSGHYF 522
            KVF+ F   +++ N +QT  V+ V+ E+L  +DE RE L+ L +WCDLCLPANEQ+FAES+R+KIQ FQ  + + M+   SA +++N  L +R +TLR LFTTKEV   N EGW + H ++L   E++AYL + ++WE++LE YLL YNYW  NLK++ IVF + G+     YF
Sbjct:   86 KVFEHFRDNISRVNSFQTGTVYEVTHEVLVFIDEFRELLDKLFSWCDLCLPANEQSFAESHRLKIQKFQMQIVNEMKRTNSARTQVNLHLTQRVETLRQLFTTKEVAAVNLEGWEKAHSELLTLQESNAYLVMGRSWEQLLESYLLLYNYWVLNLKHDSIVFGDAGRSSGNDYF 259
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BLAST of mRNA_H-elongata_contig4745.11867.1 vs. uniprot
Match: D8LE75_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE75_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 2.000e-38
Identity = 78/174 (44.83%), Postives = 108/174 (62.07%), Query Frame = 1 
Query:    1 KVFDFFNREVTKANFYQTKEVFTVSQELLSVLDEARECLELLVNWCDLCLPANEQAFAESNRIKIQDFQDYLASGMQSVVSATSEINTQLEKRAQTLRSLFTTKEVLPENYEGWSRMHRDMLVHTETSAYLYVAKTWEKVLEDYLLFYNYWKTNLKNNPIVFDNDGKGGSGHYF 522
            KVF++FN  +++ N +QT E++ VS+ELL ++DE RE L+ L +WCDLCLP N+QAFAES+R KIQ FQ  +   M               KR+ + RS    +EV   N E W + H D+L   E +AYL + ++WE++LE  LL YNYWK NLK++ IVF + GK     YF
Sbjct:   56 KVFEYFNGAISRQNNFQTGEIYEVSRELLMLVDEFRELLDRLFSWCDLCLPGNDQAFAESHRQKIQKFQVQIVQEM---------------KRSNSARS----QEVDGGNLEAWEKAHHDLLTSQEANAYLQMGRSWEQILESLLLLYNYWKVNLKDDNIVFGDAGKSTGNDYF 210
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4745.11867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G572_ECTSI1.640e-8072.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YMR0_9STRA2.160e-7365.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C7X8_9STRA4.280e-7064.20Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CFQ5_9STRA2.280e-4848.28Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LE75_ECTSI2.000e-3844.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4745contigH-elongata_contig4745:8774..11569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_006450.1
Exons5
Model size1568
Cds size303
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930783.675831-UTR-H-elongata_contig4745:8773..98131622930783.675831-UTR-H-elongata_contig4745:8773..9813Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4745 8774..9813 -
1691679568.5213354-UTR-H-elongata_contig4745:8773..98131691679568.5213354-UTR-H-elongata_contig4745:8773..9813Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4745 8774..9813 -
1622930783.7430146-UTR-H-elongata_contig4745:10763..107811622930783.7430146-UTR-H-elongata_contig4745:10763..10781Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4745 10764..10781 -
1691679568.5609355-UTR-H-elongata_contig4745:10763..107811691679568.5609355-UTR-H-elongata_contig4745:10763..10781Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4745 10764..10781 -
1622930783.7620428-UTR-H-elongata_contig4745:11050..111571622930783.7620428-UTR-H-elongata_contig4745:11050..11157Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4745 11051..11157 -
1691679568.5796583-UTR-H-elongata_contig4745:11050..111571691679568.5796583-UTR-H-elongata_contig4745:11050..11157Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4745 11051..11157 -
1622930783.7775211-UTR-H-elongata_contig4745:11469..115691622930783.7775211-UTR-H-elongata_contig4745:11469..11569Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4745 11470..11569 -
1691679568.590609-UTR-H-elongata_contig4745:11469..115691691679568.590609-UTR-H-elongata_contig4745:11469..11569Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4745 11470..11569 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930783.69435-CDS-H-elongata_contig4745:9813..99151622930783.69435-CDS-H-elongata_contig4745:9813..9915Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4745 9814..9915 -
1691679568.5307212-CDS-H-elongata_contig4745:9813..99151691679568.5307212-CDS-H-elongata_contig4745:9813..9915Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4745 9814..9915 -
1622930783.7103448-CDS-H-elongata_contig4745:10118..102081622930783.7103448-CDS-H-elongata_contig4745:10118..10208Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4745 10119..10208 -
1691679568.5402634-CDS-H-elongata_contig4745:10118..102081691679568.5402634-CDS-H-elongata_contig4745:10118..10208Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4745 10119..10208 -
1622930783.7251437-CDS-H-elongata_contig4745:10652..107631622930783.7251437-CDS-H-elongata_contig4745:10652..10763Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4745 10653..10763 -
1691679568.5495489-CDS-H-elongata_contig4745:10652..107631691679568.5495489-CDS-H-elongata_contig4745:10652..10763Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4745 10653..10763 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4745.11867.1prot_H-elongata_contig4745.11867.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4745 9814..10763 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4745.11867.1

>prot_H-elongata_contig4745.11867.1 ID=prot_H-elongata_contig4745.11867.1|Name=mRNA_H-elongata_contig4745.11867.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MQSVVSATSEINTQLEKRAQTLRSLFTTKEVLPENYEGWSRMHRDMLVHT
ETSAYLYVAKTWEKVLEDYLLFYNYWKTNLKNNPIVFDNDGKGGSGHYFG
*
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mRNA from alignment at H-elongata_contig4745:8774..11569-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4745.11867.1 ID=mRNA_H-elongata_contig4745.11867.1|Name=mRNA_H-elongata_contig4745.11867.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2796bp|location=Sequence derived from alignment at H-elongata_contig4745:8774..11569- (Himanthalia elongata Himel1 dioecious)
AAGGTGTTTGATTTCTTCAACCGGGAAGTGACGAAGGCCAACTTCTACCA
GACGAAGGAAGTATTCACCGTGAGCCAAGAGCTGCTCTCGGTGCTTGACG
GTGAGCAACCCCCACTCCATTTGTCCGTGATACTTCTCCCACCGAGTACG
CCTGTGATAACAAATCTGGTGGAGGTGCTCCCCATCTCTTATCTCTGGCA
AGCTGATGGACGGGCAGGAAAGTTCGACATTGTGACGAGCATGCCGTGAT
GCAGCAGTCACGTTGGGAAGTATTGTCGAATGTTCTTTCGGATGCGAGAC
CTCCACGGTTGATTGCGTCCTGGTTTATTGTTTGCGTGTGTTGTCCTGAT
TCATTTTTCGCTGTGGTTCGCCTGCACCCCGCTCGCTGTCACCACGCACG
TCTTTATCGCAGAGGCGAGGGAATGCTTGGAGCTGCTGGTGAATTGGTGC
GACCTGTGCTTGCCCGCCAATGAGCAAGCGTTCGCCGAGTCAAATCGCAT
AAAAATCCAAGACTTCCAGGTGAGAGGTAGACGGCCGAAAGAGCTAGATC
ATGAAATAATCCGGAGTAATGTACCGATATGTGTCATCCGGTCTATAAAT
AATGTCGCACGCTTGCCTTGGTCATTGCTCGCCGTGAAAGCTTTCGAGAG
TCTCCCTTGCTTGAACTGCGGCGCGCTGGACCTGCTCTTCGGTGTACCAT
GCTGTGATCCATTGAGGCGTCTTCGCTGAAGGCGGTCGATTGCAGCGAAG
AATCTTGAGAGCATGTCCTTTTTCTCTGGTTGCTTCAGGACTACCTAGCC
TCTGGAATGCAGAGCGTGGTGTCAGCAACGAGCGAGATCAACACGCAGCT
GGAGAAGAGAGCGCAGACGCTGCGGTCCCTCTTCACGACCAAGGAAGTAC
TGCCAGAAAACTACGAGGTCGGTACGAAGCTGGAAAAACGTCTCTTCAAG
CGCCGCGCACCCAAGCGACGCATAGTGCACCAGCTTCAGAAACCAAAGTT
CTTGTTGGTTGCGCCTCGCGGTCTAGATACATCATCGACTGTCTTTTGAC
ATTCGCGTCGATATTATGGATCGCTCGATCTTCCTGCCATGGGGTCTGCC
AGTCGTTGTCTGCTTCTCATTCACTTTTGCTGTGCAGTGGGGGCTCAACT
CAGCGTTGGCACAATGTCGATATCGAGATAGCAGCAGTAGTCGTAGACGC
AACTGTTTCTACCGTTATCGGCGATCCCCTTCTCTCTATCCCCGAGGGGC
TGGCGGGTGTGTTGGTCCCTTGAAAACAAAGAGGTCGCCGTGTCGATGGT
ACTGCAATAAAATTTGTTTTCATGGACGATTTTTTATTTTACGTGTGCTT
TCCCTGGGCAGGGATGGTCGCGCATGCACCGCGACATGCTGGTACACACT
GAAACCAGTGCCTATCTATACGTGGCCAAAACATGGGAAAAGGTGTTGGA
GGTCAGTTCGAGGAGCTACGCGGCGCGCGATCGCAAGCCTTTCTCTTGCG
TTGAAGTCGAGCTGCGATTGGATCTAAGGTAGCTTTTAGCGAGAGCCTCC
CACAAGAAGTGTCGCTCTATCCAAAGGCTCTCGCGTCAGCAACGCCGCGC
CGTATTTTCTCCCCTGACTTTTATCGCCTCATCCCTACCCCACAACCCTC
CCAGGACTACTTGCTGTTTTACAATTACTGGAAGACCAATCTGAAGAATA
ACCCAATCGTTTTCGATAACGATGGCAAGGGAGGAAGCGGCCACTACTTC
GGCTGACCTCGCGGTGACCTTCCCCGACGCGGTCGCGGCGCTTCAAATCC
GCTCTGCATTCACGACGGACCTTGTAGTTAGTGGAAGCCTGGGTCACTTT
TGCTTTCAAATGTGCATCACATTACTAGATGGAAGCCGGTGTTATCGACC
TCGGTCGCCCCCGCCTGGAGCTGTTCAAGATTTAATTTTTGTTGACGACT
ACCTTAAGTGACATAATGAGGTTTGCTGGCCGACGGAGATTTACCCAAGA
GTCTGGGCGATTTTCATCATACATGCAAGGATGCTTCGCAACGAATTTAC
GGAGCAAGTTGCAGCTGAGAGTTACGCACGGTTATTAATATTTGCGCGGG
GATCCCGCTCAACGCCCTACCCCGTTTGGCATTCCGCGACTTCGTGTAAG
TTGGACTATATAGTCACCGTGAATGCGGGGTAGCGCTACCATGTTGCCAT
TTTTCGTAATTTGGCACTTTTATATTTCTATGTTTTATGATAGAGCTACT
CGAGGGTCGGTCTAAATAGCCGTTTTAAGTCAGGTGGGTTTCTAAGCGCT
GTACTTCCGACCAAGTGTCTCGGGGCTATTTGCCGCAGAGAGCATTTAGG
TTGGAACGTTTCGCTGAGTGCGTTCAGTTTAGGAGACCGCGCAGAGTCGA
ACATCTGAGCCATTTCATGCGTGCGATCGTTTACATCTGTGCCGTTGAGG
GTCGCAAATGGTCTCGTTGTCCAGAGCTCCAAGAGTGTCCAAGAGTCAGA
GGTCCAAGAGTGGACGATCAACCATATTTGTACACAGCAGTGAAATAACG
ATGTAACTTGTGTAAAGTAGTAATAAATGCTGGTATTAATAATTGCGTGT
GTTAAACAAAGCGGCCAACAGAGTTGTCAATAGTCGACCATATAGCGCCG
CTGACACCCGCGGCAGAAACTGGAGCGAAGAAGACAATTGTTGAAATCGC
CTGCCGAACCAAAACGTGCCCCACAGGACGGACAAGTCAGTGGTTATGAA
TGTATTGGCACATTTGGCTCATGATTTTCGCCCAGTCCCGCTCGTG
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Coding sequence (CDS) from alignment at H-elongata_contig4745:8774..11569-

>mRNA_H-elongata_contig4745.11867.1 ID=mRNA_H-elongata_contig4745.11867.1|Name=mRNA_H-elongata_contig4745.11867.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig4745:8774..11569- (Himanthalia elongata Himel1 dioecious)
ATGCAGAGCGTGGTGTCAGCAACGAGCGAGATCAACACGCAGCTGGAGAA
GAGAGCGCAGACGCTGCGGTCCCTCTTCACGACCAAGGAAGTACTGCCAG
AAAACTACGAGATGCAGAGCGTGGTGTCAGCAACGAGCGAGATCAACACG
CAGCTGGAGAAGAGAGCGCAGACGCTGCGGTCCCTCTTCACGACCAAGGA
AGTACTGCCAGAAAACTACGAGGGATGGTCGCGCATGCACCGCGACATGC
TGGTACACACTGAAACCAGTGCCTATCTATACGTGGCCAAAACATGGGAA
AAGGTGTTGGAGGGATGGTCGCGCATGCACCGCGACATGCTGGTACACAC
TGAAACCAGTGCCTATCTATACGTGGCCAAAACATGGGAAAAGGTGTTGG
AGGACTACTTGCTGTTTTACAATTACTGGAAGACCAATCTGAAGAATAAC
CCAATCGTTTTCGATAACGATGGCAAGGGAGGAAGCGGCCACTACTTCGG
CTGAGACTACTTGCTGTTTTACAATTACTGGAAGACCAATCTGAAGAATA
ACCCAATCGTTTTCGATAACGATGGCAAGGGAGGAAGCGGCCACTACTTC
GGCTGA
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