mRNA_H-elongata_contig47242.11833.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47242.11833.1
Unique NamemRNA_H-elongata_contig47242.11833.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47242.11833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47242contigH-elongata_contig47242:1666..2305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_000830.1
Exons1
Model size641
Cds size639
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930779.7720206-CDS-H-elongata_contig47242:1665..23041622930779.7720206-CDS-H-elongata_contig47242:1665..2304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47242 1666..2304 +
1691679566.7467515-CDS-H-elongata_contig47242:1665..23041691679566.7467515-CDS-H-elongata_contig47242:1665..2304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47242 1666..2304 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47242.11833.1prot_H-elongata_contig47242.11833.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47242 1666..2304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47242.11833.1

>prot_H-elongata_contig47242.11833.1 ID=prot_H-elongata_contig47242.11833.1|Name=mRNA_H-elongata_contig47242.11833.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=213bp
VAHTVDSVVLARVLLLKAYAAAMEKLPMARDAAVSVFGSRMLAASGSSAR
VRATGPVKAKRPSSQQGHPGNKQRSKKYSKKSSPTPALFVRQCTAVVTPP
ASPLARVGPVARSKALDASTAVSLVKETASATEGNIVKATTDDVATKDQA
VDIAGEVVEVTRSRPMNCIVKHDTQVVENGKIVQPPPSLLAEKKEDQNKD
KGDEEVKEAADVT
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mRNA from alignment at H-elongata_contig47242:1666..2305+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47242.11833.1 ID=mRNA_H-elongata_contig47242.11833.1|Name=mRNA_H-elongata_contig47242.11833.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=640bp|location=Sequence derived from alignment at H-elongata_contig47242:1666..2305+ (Himanthalia elongata Himel1 dioecious)
GTGGCTCACACGGTGGACTCAGTCGTCCTGGCGCGAGTCCTGCTCTTGAA
GGCCTACGCAGCAGCGATGGAGAAATTGCCTATGGCTCGCGATGCAGCGG
TGTCCGTGTTCGGCAGCAGGATGCTTGCCGCATCCGGGTCGTCGGCAAGG
GTAAGGGCGACGGGCCCGGTAAAGGCAAAGAGGCCGAGCTCGCAGCAAGG
ACACCCGGGTAATAAGCAGCGTTCAAAGAAGTACTCCAAGAAGAGCTCTC
CAACACCCGCGCTCTTCGTTCGCCAGTGTACCGCTGTAGTGACTCCTCCA
GCGTCCCCCCTTGCGAGAGTTGGACCCGTCGCACGAAGTAAGGCGCTAGA
TGCGAGTACTGCTGTTTCTTTGGTCAAAGAGACCGCTAGTGCGACGGAGG
GAAATATAGTCAAGGCGACGACCGACGACGTCGCGACGAAGGATCAAGCG
GTTGATATTGCGGGGGAGGTAGTGGAGGTCACGCGCTCGAGGCCCATGAA
CTGCATTGTTAAGCATGACACACAGGTTGTCGAAAATGGAAAGATAGTGC
AGCCGCCGCCATCGCTTCTTGCTGAAAAGAAAGAGGACCAAAATAAGGAT
AAAGGGGACGAAGAGGTTAAAGAAGCGGCTGATGTCACAC
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Coding sequence (CDS) from alignment at H-elongata_contig47242:1666..2305+

>mRNA_H-elongata_contig47242.11833.1 ID=mRNA_H-elongata_contig47242.11833.1|Name=mRNA_H-elongata_contig47242.11833.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1278bp|location=Sequence derived from alignment at H-elongata_contig47242:1666..2305+ (Himanthalia elongata Himel1 dioecious)
GTGGCTCACACGGTGGACTCAGTCGTCCTGGCGCGAGTCCTGCTCTTGAA
GGCCTACGCAGCAGCGATGGAGAAATTGCCTATGGCTCGCGATGCAGCGG
TGTCCGTGTTCGGCAGCAGGATGCTTGCCGCATCCGGGTCGTCGGCAAGG
GTAAGGGCGACGGGCCCGGTAAAGGCAAAGAGGCCGAGCTCGCAGCAAGG
ACACCCGGGTAATAAGCAGCGTTCAAAGAAGTACTCCAAGAAGAGCTCTC
CAACACCCGCGCTCTTCGTTCGCCAGTGTACCGCTGTAGTGACTCCTCCA
GCGTCCCCCCTTGCGAGAGTTGGACCCGTCGCACGAAGTAAGGCGCTAGA
TGCGAGTACTGCTGTTTCTTTGGTCAAAGAGACCGCTAGTGCGACGGAGG
GAAATATAGTCAAGGCGACGACCGACGACGTCGCGACGAAGGATCAAGCG
GTTGATATTGCGGGGGAGGTAGTGGAGGTCACGCGCTCGAGGCCCATGAA
CTGCATTGTTAAGCATGACACACAGGTTGTCGAAAATGGAAAGATAGTGC
AGCCGCCGCCATCGCTTCTTGCTGAAAAGAAAGAGGACCAAAATAAGGAT
AAAGGGGACGAAGAGGTTAAAGAAGCGGCTGATGTCACAGTGGCTCACAC
GGTGGACTCAGTCGTCCTGGCGCGAGTCCTGCTCTTGAAGGCCTACGCAG
CAGCGATGGAGAAATTGCCTATGGCTCGCGATGCAGCGGTGTCCGTGTTC
GGCAGCAGGATGCTTGCCGCATCCGGGTCGTCGGCAAGGGTAAGGGCGAC
GGGCCCGGTAAAGGCAAAGAGGCCGAGCTCGCAGCAAGGACACCCGGGTA
ATAAGCAGCGTTCAAAGAAGTACTCCAAGAAGAGCTCTCCAACACCCGCG
CTCTTCGTTCGCCAGTGTACCGCTGTAGTGACTCCTCCAGCGTCCCCCCT
TGCGAGAGTTGGACCCGTCGCACGAAGTAAGGCGCTAGATGCGAGTACTG
CTGTTTCTTTGGTCAAAGAGACCGCTAGTGCGACGGAGGGAAATATAGTC
AAGGCGACGACCGACGACGTCGCGACGAAGGATCAAGCGGTTGATATTGC
GGGGGAGGTAGTGGAGGTCACGCGCTCGAGGCCCATGAACTGCATTGTTA
AGCATGACACACAGGTTGTCGAAAATGGAAAGATAGTGCAGCCGCCGCCA
TCGCTTCTTGCTGAAAAGAAAGAGGACCAAAATAAGGATAAAGGGGACGA
AGAGGTTAAAGAAGCGGCTGATGTCACA
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