mRNA_H-elongata_contig47234.11831.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47234.11831.1
Unique NamemRNA_H-elongata_contig47234.11831.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig47234.11831.1 vs. uniprot
Match: D8LQC5_ECTSI (Similar to oral cancer overexpressed 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQC5_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 3.870e-26
Identity = 55/68 (80.88%), Postives = 62/68 (91.18%), Query Frame = 3 
Query:    9 FPFSDKALASMRAVVALAESIPRINTKDEVALVTVQRVRARFRAVTSMVGLPLVFDAKGQAEAKDFSF 212
            FPFS+KALASMRAVV LAES+PR+NT++  A  T QRVRARFRAVTSMVGLP+VFD+KGQAEAKDFSF
Sbjct:   69 FPFSEKALASMRAVVTLAESVPRVNTQEATAAQTAQRVRARFRAVTSMVGLPVVFDSKGQAEAKDFSF 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47234.11831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQC5_ECTSI3.870e-2680.88Similar to oral cancer overexpressed 1 n=2 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47234contigH-elongata_contig47234:1602..3530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionConserved unknown protein
Ec32 orthologEc-10_005120.1
Exons2
Model size1318
Cds size177
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47234.11831.1prot_H-elongata_contig47234.11831.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47234 1640..2427 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930779.515327-UTR-H-elongata_contig47234:1601..16391622930779.515327-UTR-H-elongata_contig47234:1601..1639Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47234 1602..1639 +
1691679566.6052926-UTR-H-elongata_contig47234:1601..16391691679566.6052926-UTR-H-elongata_contig47234:1601..1639Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47234 1602..1639 +
1622930779.5611768-UTR-H-elongata_contig47234:2427..35301622930779.5611768-UTR-H-elongata_contig47234:2427..3530Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47234 2428..3530 +
1691679566.6386232-UTR-H-elongata_contig47234:2427..35301691679566.6386232-UTR-H-elongata_contig47234:2427..3530Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47234 2428..3530 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930779.5310633-CDS-H-elongata_contig47234:1639..17891622930779.5310633-CDS-H-elongata_contig47234:1639..1789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47234 1640..1789 +
1691679566.6180587-CDS-H-elongata_contig47234:1639..17891691679566.6180587-CDS-H-elongata_contig47234:1639..1789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47234 1640..1789 +
1622930779.5450716-CDS-H-elongata_contig47234:2400..24271622930779.5450716-CDS-H-elongata_contig47234:2400..2427Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47234 2401..2427 +
1691679566.628135-CDS-H-elongata_contig47234:2400..24271691679566.628135-CDS-H-elongata_contig47234:2400..2427Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47234 2401..2427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47234.11831.1

>prot_H-elongata_contig47234.11831.1 ID=prot_H-elongata_contig47234.11831.1|Name=mRNA_H-elongata_contig47234.11831.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
MRAVVALAESIPRINTKDEVALVTVQRVRARFRAVTSMVGLPLVFDAKGQ
AEAKDFSF*
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mRNA from alignment at H-elongata_contig47234:1602..3530+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47234.11831.1 ID=mRNA_H-elongata_contig47234.11831.1|Name=mRNA_H-elongata_contig47234.11831.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1929bp|location=Sequence derived from alignment at H-elongata_contig47234:1602..3530+ (Himanthalia elongata Himel1 dioecious)
CAGTAACATTCCCCTTCAGCGATAAGGCGCTAGCGTCCATGCGAGCGGTC
GTTGCGCTGGCGGAGAGCATCCCGCGCATCAACACGAAAGACGAAGTCGC
CTTAGTGACTGTACAGCGTGTCCGCGCGAGATTCCGTGCGGTCACTTCCA
TGGTCGGGCTGCCGTTAGTCTTCGATGCGAAAGGCCAGGTAAGGGGCTTA
AGGGAGGGGGGCGTACTTAAGGGGGGGCGATTTGAGATGCCGCTCCACGG
CGGACAACAGTTTATGAGGGCATGCATGTCATCGCGGTAGTGCTTGCAGC
ATTTTGGCGTTTTTTTCTGCTGCGCGTATGGTATGCCGTGCTCGGGCCGT
GCGCTTAGACCAACCATATAGTATATTAGTGCTTCGCCCAGCGATCGTCA
AATCACTGGTGTCACCTGCGGACGATACATCGGCAGCCATAGTTCAGACG
TTCGGAACTTGCATTGTTGTACATCATTTTGAATCCGGCGCGAGATTGAG
CCTGAATCCCTCAACCACGACCTGGTTCAATGCTCGCGGTCATCCAGTAG
CGTCCGGAGTACCCTCGATTACGGAAAGCAGGGGCTTACGCACGCAGGAC
TCATGGACTCCGCTGATGGAAGCACCCCTTGGTGTTCGCATATTGCCGAT
ACCGAGGCAGCAATGAGTCGTGTTTCAAAATTGCGTGGGTCTTCCTTATT
AGGATGATGCGCTGACGTTTCGTCATCTCATTTTCGTATCCATTTCGCCG
CCCAAGAAGCTCGCACTTGCCCCCTTAAACATCACCGCCACGCTCACAGG
CGGAGGCCAAGGACTTCTCATTTTGAGTGGCCTGACGTGTCTGAAGGCGG
ACGGCTAGTTGTTGAGTCGGCGGAACCCCACAACAGCCCCCCGCCGCCAT
TCTAAGGGGGCACTTTGGTTGTGGAATTTTGTTCGCGCGTGTTTCGGGTA
GACCCGCTAGGGTCGCATGCACTGAGTCGAGAAGCTGACTTGATCGTGGT
GCACTATTGCATGAGTAAAAGACGTAGCAAGACGTTTACCATAATTGTGA
GTTTTATTTGAAGGACAAGTTCCCTGCACCGCGAGCTGATTATTCGAAGA
GGATCGGATGTTATTTGTGAGTGTGTGTGTGTGTGTGTGCGTGCGTGGGG
GGGGGTGGGGGATGATATCAGTTTTTATTTGGTCAAGACTTTCCTTACGG
TTACGAGACGTAGACCCATTAAAAATTCCGTACACCACAGGATAATGCTT
CCAATCTTTGGATCGTGGTAAAGATCAAAATGCAATCATAGCCTGTCGTA
CAATAAATAGATGCGAGAGCATATAAACCACCGTGCTCACGAAGATATTG
ATTTTGACTAGGGAACTTTTCCTGCATGGGCGACCATACATTGCAACCAA
ATTGAATCGTATCTGGAAAGTTAGGACAGGGATGATCTAGGACCAGAGGG
TGAGGTGGAGGAATGGGCAGACTTCGTGGCAGATGTAGTCTGGATGCTCG
GGATTAAGGAGAAATTGAAAACTAGTGTGAAAGTTGGGCACTTGCCGCCT
CTGTCAGATAGTGGTCAGATAGTGGTAGTGTAGGCGCGCTGACAAAACGG
TATATACAGCTATTTGAGGTATGCTACAACTGTTTCCCTACAAGTCTAGA
ACCTTCAGCTCTTAGTGTCATTCGCTATTAGTCTTGAGGCAGTTGTAAGA
GTCCCGCTCGAGAACGACACCTGGTGGTGATCCTGAATGTAAGCACTGCT
GTCGAACTCCCCTGATACGTGATCTTGTGGTGGCATCGGAATCGCTGCTG
CTGCTCTGGTTGCTTGCTGTTTATTTTTTTCGTTTAATGCCTCCGTACTT
CACAACAGGACAGGTATAACTGCGACGACATCAAAGTGCGAAGTACATGG
TGCGGTTTTAGGAAGGGACGTTGCATTGC
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Coding sequence (CDS) from alignment at H-elongata_contig47234:1602..3530+

>mRNA_H-elongata_contig47234.11831.1 ID=mRNA_H-elongata_contig47234.11831.1|Name=mRNA_H-elongata_contig47234.11831.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig47234:1602..3530+ (Himanthalia elongata Himel1 dioecious)
ATGCGAGCGGTCGTTGCGCTGGCGGAGAGCATCCCGCGCATCAACACGAA
AGACGAAGTCGCCTTAGTGACTGTACAGCGTGTCCGCGCGAGATTCCGTG
CGGTCACTTCCATGGTCGGGCTGCCGTTAGTCTTCGATGCGAAAGGCCAG
ATGCGAGCGGTCGTTGCGCTGGCGGAGAGCATCCCGCGCATCAACACGAA
AGACGAAGTCGCCTTAGTGACTGTACAGCGTGTCCGCGCGAGATTCCGTG
CGGTCACTTCCATGGTCGGGCTGCCGTTAGTCTTCGATGCGAAAGGCCAG
GCGGAGGCCAAGGACTTCTCATTTTGAGCGGAGGCCAAGGACTTCTCATT
TTGA
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