mRNA_H-elongata_contig47169.11822.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47169.11822.1
Unique NamemRNA_H-elongata_contig47169.11822.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47169.11822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47169contigH-elongata_contig47169:3144..3643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size500
Cds size495
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930778.3273149-UTR-H-elongata_contig47169:3143..31481622930778.3273149-UTR-H-elongata_contig47169:3143..3148Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47169 3144..3148 +
1691679566.0945745-UTR-H-elongata_contig47169:3143..31481691679566.0945745-UTR-H-elongata_contig47169:3143..3148Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47169 3144..3148 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930778.3452084-CDS-H-elongata_contig47169:3148..36431622930778.3452084-CDS-H-elongata_contig47169:3148..3643Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47169 3149..3643 +
1691679566.1036618-CDS-H-elongata_contig47169:3148..36431691679566.1036618-CDS-H-elongata_contig47169:3148..3643Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47169 3149..3643 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47169.11822.1prot_H-elongata_contig47169.11822.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47169 3149..3643 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47169.11822.1

>prot_H-elongata_contig47169.11822.1 ID=prot_H-elongata_contig47169.11822.1|Name=mRNA_H-elongata_contig47169.11822.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=165bp
MLPTIHASPVRVELASRKPRLEPFAISLPSRPSVIIELRPAAGEEKANAC
AGCAVRHAASTSAPVITALPADMQPPPYPGPQPLLLLHLGMLDRAGASAG
VAAEDACSRSGRTAVLMSVGRACCMSRFEFLSSLLLEEVISFHSFMKSSS
RRGLVQEYTAEQFC*
back to top

mRNA from alignment at H-elongata_contig47169:3144..3643+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47169.11822.1 ID=mRNA_H-elongata_contig47169.11822.1|Name=mRNA_H-elongata_contig47169.11822.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=500bp|location=Sequence derived from alignment at H-elongata_contig47169:3144..3643+ (Himanthalia elongata Himel1 dioecious)
GCTTCATGCTACCGACGATCCACGCATCCCCCGTTCGAGTCGAGCTGGCG
AGCCGCAAACCAAGGCTAGAGCCTTTTGCGATATCACTACCCTCTCGCCC
CAGCGTGATTATCGAGCTCCGCCCCGCAGCCGGAGAAGAGAAGGCAAACG
CGTGCGCTGGTTGTGCCGTGCGACATGCCGCCAGCACTAGTGCTCCTGTT
ATCACTGCCCTACCTGCTGATATGCAACCACCACCGTATCCAGGACCACA
ACCGCTTCTGTTGCTGCATCTGGGCATGCTGGATCGCGCCGGCGCAAGCG
CTGGCGTTGCTGCGGAAGACGCATGCTCGAGGAGCGGGAGGACCGCTGTG
CTCATGTCAGTAGGTAGAGCGTGCTGCATGTCCCGGTTTGAATTTTTATC
CTCCTTACTTCTAGAAGAGGTTATATCCTTTCATTCCTTTATGAAGAGTA
GCAGTCGACGAGGATTGGTTCAGGAGTACACGGCTGAACAGTTCTGTTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig47169:3144..3643+

>mRNA_H-elongata_contig47169.11822.1 ID=mRNA_H-elongata_contig47169.11822.1|Name=mRNA_H-elongata_contig47169.11822.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=990bp|location=Sequence derived from alignment at H-elongata_contig47169:3144..3643+ (Himanthalia elongata Himel1 dioecious)
ATGCTACCGACGATCCACGCATCCCCCGTTCGAGTCGAGCTGGCGAGCCG
CAAACCAAGGCTAGAGCCTTTTGCGATATCACTACCCTCTCGCCCCAGCG
TGATTATCGAGCTCCGCCCCGCAGCCGGAGAAGAGAAGGCAAACGCGTGC
GCTGGTTGTGCCGTGCGACATGCCGCCAGCACTAGTGCTCCTGTTATCAC
TGCCCTACCTGCTGATATGCAACCACCACCGTATCCAGGACCACAACCGC
TTCTGTTGCTGCATCTGGGCATGCTGGATCGCGCCGGCGCAAGCGCTGGC
GTTGCTGCGGAAGACGCATGCTCGAGGAGCGGGAGGACCGCTGTGCTCAT
GTCAGTAGGTAGAGCGTGCTGCATGTCCCGGTTTGAATTTTTATCCTCCT
TACTTCTAGAAGAGGTTATATCCTTTCATTCCTTTATGAAGAGTAGCAGT
CGACGAGGATTGGTTCAGGAGTACACGGCTGAACAGTTCTGTTGAATGCT
ACCGACGATCCACGCATCCCCCGTTCGAGTCGAGCTGGCGAGCCGCAAAC
CAAGGCTAGAGCCTTTTGCGATATCACTACCCTCTCGCCCCAGCGTGATT
ATCGAGCTCCGCCCCGCAGCCGGAGAAGAGAAGGCAAACGCGTGCGCTGG
TTGTGCCGTGCGACATGCCGCCAGCACTAGTGCTCCTGTTATCACTGCCC
TACCTGCTGATATGCAACCACCACCGTATCCAGGACCACAACCGCTTCTG
TTGCTGCATCTGGGCATGCTGGATCGCGCCGGCGCAAGCGCTGGCGTTGC
TGCGGAAGACGCATGCTCGAGGAGCGGGAGGACCGCTGTGCTCATGTCAG
TAGGTAGAGCGTGCTGCATGTCCCGGTTTGAATTTTTATCCTCCTTACTT
CTAGAAGAGGTTATATCCTTTCATTCCTTTATGAAGAGTAGCAGTCGACG
AGGATTGGTTCAGGAGTACACGGCTGAACAGTTCTGTTGA
back to top