mRNA_H-elongata_contig47142.11817.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47142.11817.1
Unique NamemRNA_H-elongata_contig47142.11817.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig47142.11817.1 vs. uniprot
Match: D7FMG2_ECTSI (Cycloeucalenol cycloisomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMG2_ECTSI)

HSP 1 Score: 419 bits (1078), Expect = 4.570e-141
Identity = 204/269 (75.84%), Postives = 232/269 (86.25%), Query Frame = 3
Query:    3 LACAEKNPAKRRWEIFNLGYSVFWVGCFAIIIAFSMYEMFDEVAYFAVLFGLCVPIFAFPLLSVHPSEADVPVGQRFGVKANVWIAVYSFIGNYWYTHYFYSVLGAKYTFPSWRLNDVPIALIGATIFYFSLYHVLSNMAIRKVVTSFEANAARTVTLVVLVGVMSYATAFMETLTISGFPYYQFEDRDMAYVVGSAFYGIYFVVSFPMFYAFEEWPNKSDKQHGTTQS--SIEGIWSAALNAMGACMLILCLLDFVRLAVGADLVMKG 803
            LACA+ NPAKR WE+FNL Y+VFWVGCFA II FS+YE FDEV+Y  V FGL +PI AFPL+S+HPSEA + VGQR+GV+ANVWIA+YSFIGNYWYTHYFY VLGAKYTFPSWRLNDVPI LI AT+FYFSLYH LSNMAIRKVVTSFEA  +R VTLVVLVGVMSYA AF ETLTISGFPYY+FEDRDMAYVVGSAFYGIYFVVSFPMFYAF+EWP + + +    ++  S  G+W AA++++GA MLILCLLDFVRLAVG++  MKG
Sbjct:   95 LACAKTNPAKRAWEVFNLRYAVFWVGCFAAIIGFSLYEDFDEVSYMVVCFGLSLPIVAFPLVSMHPSEAGLAVGQRYGVRANVWIAIYSFIGNYWYTHYFYCVLGAKYTFPSWRLNDVPIPLIAATVFYFSLYHALSNMAIRKVVTSFEATTSRAVTLVVLVGVMSYAVAFTETLTISGFPYYEFEDRDMAYVVGSAFYGIYFVVSFPMFYAFDEWPQEDENKLADRKAGNSARGLWGAAVDSLGASMLILCLLDFVRLAVGSEFFMKG 363          
BLAST of mRNA_H-elongata_contig47142.11817.1 vs. uniprot
Match: A0A836CJT1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT1_9STRA)

HSP 1 Score: 290 bits (743), Expect = 3.040e-91
Identity = 150/263 (57.03%), Postives = 179/263 (68.06%), Query Frame = 3
Query:    3 LACAEKNPAKRRWEIFNLGYSVFWVGCFAIIIAFSMYEMFDEVAYFAVLFGLCVPIFAFPLLSVHPSEADVPVGQRFGVKANVWIAVYSFIGNYWYTHYFYSVLGAKYTFPSWRLNDVPIALIGATIFYFSLYHVLSNMAIRKVVTSFEANAARTVTLVVLVGVMSYATAFMETLTISGFPYYQFEDRDMAYVVGSAFYGIYFVVSFPMFYAFEEWPNKSDKQHGTTQSSIEGIWSAALNAMGACMLILCLLDFVRLAVGADL 791
            LA    N AKR WE+FNL Y V W+  FA I+ F +Y+    V Y  V  GLCVPI   PL+    S+  +P+ +RFGV+AN+W+A+YSFIGNYWYTHYFY VL A Y+ P WRLNDVPI L  AT FYF  YH LSN+A+RKVVT++  NAAR+V LV LV  MSY  AFMETLTIS +P Y FEDR+MAY +GSAFYGIYF+VSFPMFY F+EWP          Q     +W   +++MG  M IL LLD VRLA G  L
Sbjct:   54 LADPVTNSAKRAWEVFNLCYGVVWIAVFAYIVYFGVYKDLTRVGYMVVCGGLCVPILLSPLVMPSKSDKKLPLLERFGVRANLWMAIYSFIGNYWYTHYFYCVLRASYSMPCWRLNDVPIQLYFATFFYFCFYHSLSNLALRKVVTTYVHNAARSVFLVALVLAMSYFVAFMETLTISAYPDYSFEDREMAYKLGSAFYGIYFIVSFPMFYRFDEWPQ---------QLKQPSLWQTCVDSMGTGMAILTLLDAVRLATGVPL 307          
BLAST of mRNA_H-elongata_contig47142.11817.1 vs. uniprot
Match: A0A7S3XQ29_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ29_HETAK)

HSP 1 Score: 286 bits (732), Expect = 4.450e-90
Identity = 140/211 (66.35%), Postives = 164/211 (77.73%), Query Frame = 3
Query:   15 EKNPAKRRWEIFNLGYSVFWVGCFAIIIAFSMYEMFDEVAYFAVLFGLCVPIFAFPLLSVHPSEADVPVGQRFGVKANVWIAVYSFIGNYWYTHYFYSVLGAKYTFPSWRLNDVPIALIGATIFYFSLYHVLSNMAIRKVVTSFEANAARTVTLVVLVGVMSYATAFMETLTISGFPYYQFEDRDMAYVVGSAFYGIYFVVSFPMFYAFEE 647
            ++N AKR +EIF L Y+ FWVGCFA+I+ F +YE FDE AYFAV  GLCVP+F +P L+    E + P+ +R+  KA++W+AVYSFIGNYWYTHYFYSVL A YTFPSWRLNDVPI L  AT FYFS YHV SNMA+RKV+T++   AART  L  LV  +SYATAF ETLTISGFPYY FEDR+MAY VGS FYGIYF+VSFPMF    E
Sbjct:   64 KENSAKRSYEIFTLKYTPFWVGCFAVIVGFQLYESFDEAAYFAVCSGLCVPLFLYPFLA----ETETPLARRYAAKASLWLAVYSFIGNYWYTHYFYSVLRASYTFPSWRLNDVPIPLYFATFFYFSTYHVFSNMALRKVLTTYAPGAARTAFLCSLVFALSYATAFAETLTISGFPYYAFEDRNMAYTVGSVFYGIYFLVSFPMFQRLNE 270          
BLAST of mRNA_H-elongata_contig47142.11817.1 vs. uniprot
Match: A0A7S2V4D0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4D0_9STRA)

HSP 1 Score: 280 bits (717), Expect = 8.700e-88
Identity = 149/262 (56.87%), Postives = 177/262 (67.56%), Query Frame = 3
Query:   12 AEKNPAKRRWEIFNLGYSVFWVGCFAIIIAFSMYEMFDEVAYFAVLFGLCVPIFAFPLLSVHPSEADVPVGQRFGVKANVWIAVYSFIGNYWYTHYFYSVLGAKYTFPSWRLNDVPIALIGATIFYFSLYHVLSNMAIRKVVTSFEANAARTVTLVVLVGVMSYATAFMETLTISGFPYYQFEDRDMAYVVGSAFYGIYFVVSFPMFYAFEEWPNKSDKQHGTTQSSIEGIWSAALNAMGACMLILCLLDFVRLAVGADLVM 797
            + +NP KR +E+F L Y+  W+G FA I+   +YE   EV Y  V  GLC+P+F +P          VP+ +R+  KANVW+A+YSFIGNYWYTHYFYSVL A YTFPSWRLNDVPI L  AT FYFS YHV SNMAIRKVVTSF+   AR   L  L+  MSY TAF ETLTIS FPYY FEDR+MAY VGSAFYGIYF+VSFPMFY   E   K +   G T   +       ++++GA MLIL LLD VRL +G  L +
Sbjct:   32 SSENPPKREYELFCLYYTPIWIGIFAFIVVAQVYESMAEVEYMVVCGGLCIPLFLYPHFCSE--SKTVPLAERYSFKANVWLAIYSFIGNYWYTHYFYSVLKASYTFPSWRLNDVPICLYFATFFYFSTYHVFSNMAIRKVVTSFQEGWARWFFLAALILAMSYFTAFAETLTISSFPYYDFEDRNMAYTVGSAFYGIYFIVSFPMFYRIYE---KKEAGQGFTLGQV------IIDSLGAGMLILILLDIVRLYLGIPLTI 282          
BLAST of mRNA_H-elongata_contig47142.11817.1 vs. uniprot
Match: F0Y312_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y312_AURAN)

HSP 1 Score: 278 bits (710), Expect = 1.150e-86
Identity = 141/261 (54.02%), Postives = 177/261 (67.82%), Query Frame = 3
Query:   21 NPAKRRWEIFNLGYSVFWVGCFAIIIAFSMYEMFDEVAYFAVLFGLCVPIFAFP-LLSVHPSEADVPVGQRFGVKANVWIAVYSFIGNYWYTHYFYSVLGAKYTFPSWRLNDVPIALIGATIFYFSLYHVLSNMAIRKVVTSFEANAARTVTLVVLVGVMSYATAFMETLTISGFPYYQFEDRDMAYVVGSAFYGIYFVVSFPMFYAFEEWPNKSDKQHGTTQSSIEGIWSAALNAMGACMLILCLLDFVRLAVGADLVMK 800
            N  KR  E++ L Y+V W+G FA I+ F  YE FD +AYF V  GL +P++A P LL     +   P+ +R+  KANVW+A++ F+GNYWYTHYFYSVLGA YT P+WRLNDVP+A+  AT FYF  YHVLSN A+RK+ TS+E +  R       +  MSY TAFMETLTISGFPYY FEDRDMAY VGSAFYGIYF+VSFPMF   +E P            +   +++ A+ A+ + M +LCLLDFVRLA+G    MK
Sbjct:   34 NAPKRATELWFLAYAVVWIGAFACIVGFEWYERFDALAYFLVCGGLALPLYAQPFLLPALTYDERRPLAERYSFKANVWLAIFGFVGNYWYTHYFYSVLGAAYTMPAWRLNDVPVAMFFATHFYFCFYHVLSNAALRKIRTSYEPSKRRLAFEAASIVAMSYLTAFMETLTISGFPYYSFEDRDMAYTVGSAFYGIYFLVSFPMFLRLDETPPT------VVNGATHDLFATAVEALASSMAVLCLLDFVRLALGIPFAMK 288          
BLAST of mRNA_H-elongata_contig47142.11817.1 vs. uniprot
Match: A0A6U4EXF3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4EXF3_9STRA)

HSP 1 Score: 265 bits (676), Expect = 2.330e-81
Identity = 142/267 (53.18%), Postives = 180/267 (67.42%), Query Frame = 3
Query:    3 LACAEKNPAKRRWEIFNLGYSVFWVGCFAIIIAFSMYEMFDEVAYFAVLFGLCVPIFAFPLLSVHPSEADVPVGQRFGVKANVWIAVYSFIGNYWYTHYFYSVLGAKYTFPSWRLNDVPIALIGATIFYFSLYHVLSNMAIRKVVTSFEANAARTVTLVVLVGVMSYATAFMETLTISGFPYYQFEDRDMAYVVGSAFYGIYFVVSFPMFYAFEEWPNKSDKQHGTTQSSIEGIWSAALNAMGACMLILCLLDFVRLAVGADLVMKG 803
            LA A++ P K+ +E F   YSV W+G F +IIA  +YE F EV Y  VL GL +P+F  P+L+   +E  +P  +R+G KAN WI +YSFIGNYWYTHYF+SVL A YTFPSWRLN VP  L  AT FYFS YHVLSN  +RKV T++ A  AR V   ++V  +SYATAFMET TI+GFPYY FE+R MAY VGSAFYGIYF+ SFPMF+  +E      + +G  ++    ++   ++A G  MLIL  LD VRLA+   L + G
Sbjct:   46 LAGADQ-PGKQAYEHFAAWYSVVWMGAFGVIIAAQLYEQFTEVEYLGVLGGLALPLFLQPVLAPAQAERSLPFWKRYGFKANAWIWIYSFIGNYWYTHYFFSVLKANYTFPSWRLNYVPFCLYLATHFYFSSYHVLSNALLRKVATTYAAGPARWVFSALMVLCLSYATAFMETFTIAGFPYYTFENRSMAYTVGSAFYGIYFIYSFPMFFLLDE------RSYGPART----LYETVVDACGCGMLILTTLDLVRLALSIPLTIPG 301          
BLAST of mRNA_H-elongata_contig47142.11817.1 vs. uniprot
Match: A0A8J5XCH9_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XCH9_DIALT)

HSP 1 Score: 260 bits (664), Expect = 1.230e-79
Identity = 134/262 (51.15%), Postives = 172/262 (65.65%), Query Frame = 3
Query:   21 NPAKRRWEIFNLGYSVFWVGCFAIIIAFSMYEMFDEVAYFAVLFGLCVPIFAFPLLS-VHPSEADVPVGQRFGVKANVWIAVYSFIGNYWYTHYFYSVLGAKYTFPSWRLNDVPIALIGATIFYFSLYHVLSNMAIRKVVTSFEANAARTVTLVVLVGVMSYATAFMETLTISGFPYYQFEDRDMAYVVGSAFYGIYFVVSFPMFYAFEEWPNKSDKQHGTTQSSIEGIWSAALNAMGACMLILCLLDFVRLAVGADLVMKG 803
            N +K  +E++ L YS+FW+GCFA I+AF MYE  DE  Y  V  GL  P+   P L+ + P EA  P+ QR+  KAN WI ++S IGNYWYTHYFY+VL A+YT P+WRLNDVP+AL  AT FYF+ YH  SN+ +RK+ T++  ++AR V     V   +Y TAFMET TIS +P Y FEDR MAY VGSAFYGIYF+VSFP+FY  +E   K              ++ A + A+G+ ML+L LLD VRL +G    MKG
Sbjct:   41 NESKYLYEVWALKYSIFWIGCFAAIVAFQMYERLDENGYMLVCGGLAAPLLLQPFLAPLGPREAAQPLAQRYSFKANAWIFIFSHIGNYWYTHYFYTVLKARYTMPAWRLNDVPLALTFATHFYFTTYHTFSNLMLRKIETTWRPSSARAVFTAASVVAFAYFTAFMETFTISAYPDYSFEDRFMAYTVGSAFYGIYFIVSFPVFYLLDETAAKHT------------LFQACMEALGSGMLVLMLLDLVRLLLGIPFAMKG 290          
BLAST of mRNA_H-elongata_contig47142.11817.1 vs. uniprot
Match: A0A7S0DTR5_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DTR5_9EUKA)

HSP 1 Score: 259 bits (663), Expect = 3.470e-79
Identity = 135/261 (51.72%), Postives = 176/261 (67.43%), Query Frame = 3
Query:   21 NPAKRRWEIFNLGYSVFWVGCFAIIIAFSMYEMFDEVAYFAVLFGLCVPIFAFP-LLSVHPSEADVPVGQRFGVKANVWIAVYSFIGNYWYTHYFYSVLGAKYTFPSWRLNDVPIALIGATIFYFSLYHVLSNMAIRKVVTSFEANAARTVTLVVLVGVMSYATAFMETLTISGFPYYQFEDRDMAYVVGSAFYGIYFVVSFPMFYAFEEWPNKSDKQHGTTQSSIEGIWSAALNAMGACMLILCLLDFVRLAVGADLVMK 800
            N  KR WE+F+L Y VFW+ CFAIII   +YE FD   Y  V  GL  P+   P LL     E+DVP+ +R+ +KAN+WI ++ FIGNYWYTHYFY+VL A Y+ PSW LN VPI +  AT FYF  YHVLSN+A+RK  ++F   A R + ++ LV +MSYATAFME+LTISGFP Y F+DRD+AY +GSAFYGIYF+VSFPMF   +E P K              +++ A+ A+ + M +L LLD VR+ +G DL ++
Sbjct:   55 NSCKRNWEVFSLTYGVFWITCFAIIIGGELYESFDREHYMIVCGGLATPLLLQPILLPSITGESDVPLFERYSLKANLWIFIFGFIGNYWYTHYFYNVLEAHYSMPSWDLNGVPIPMYLATHFYFCFYHVLSNLALRKAYSTFSPGAMRRLFVISLVLIMSYATAFMESLTISGFPCYGFKDRDLAYTLGSAFYGIYFIVSFPMFLRLDESPPKK-----------WDLFTVAVEALASGMAVLMLLDIVRVYMGIDLNIR 304          
BLAST of mRNA_H-elongata_contig47142.11817.1 vs. uniprot
Match: A0A7S2P5L6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P5L6_9STRA)

HSP 1 Score: 257 bits (657), Expect = 2.890e-78
Identity = 136/271 (50.18%), Postives = 175/271 (64.58%), Query Frame = 3
Query:    3 LACAEKNPAKRRWEIFNLGYSVFWVGCFAIIIAFSMYEMFDEVAYFAVLFGLCVPI----FAFPLLSVHPSEADVPVGQRFGVKANVWIAVYSFIGNYWYTHYFYSVLGAKYTFPSWRLNDVPIALIGATIFYFSLYHVLSNMAIRKVVTSFEANAARTVTLVVLVGVMSYATAFMETLTISGFPYYQFEDRDMAYVVGSAFYGIYFVVSFPMFYAFEEWPNKSDKQHGTTQSSIEGIWSAALNAMGACMLILCLLDFVRLAVGADLVMKG 803
            L CA   P KR +E++ L Y+  W+G FA ++AF +YE  D   Y  +  GL +P     F  P   ++  +A     +R+ +KAN+WIAVYSFIGNYWYTHYFYSVL A+Y+ P+ RLN+VPIAL  AT FYFS YH  SN+ +R V  SFE    R V    +V   SY TAFMETLTIS +PYY FED+ MAY  GSAFYGIYF+VSFP F+ FE   +  + +H T       +W   +++ GA M+ILCLLDFVRL +G +LV+ G
Sbjct:   63 LPCAVTEPTKRAYEVYTLIYTTIWIGIFACVVAFQIYERLDAWGYLYLCGGLSLPFLLQPFVLPSCGMNSPDAHRKWYERYSMKANLWIAVYSFIGNYWYTHYFYSVLKARYSMPAHRLNNVPIALYFATHFYFSTYHAFSNILLRWVTRSFENGFMRNVLFWSVVVSFSYFTAFMETLTISSYPYYSFEDKHMAYTTGSAFYGIYFLVSFPTFFYFETQVDDKEGKHTT-------LWETFVSSCGAGMMILCLLDFVRLYIGVNLVVGG 326          
BLAST of mRNA_H-elongata_contig47142.11817.1 vs. uniprot
Match: A0A1E7F4W0_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F4W0_9STRA)

HSP 1 Score: 255 bits (652), Expect = 1.820e-77
Identity = 138/288 (47.92%), Postives = 185/288 (64.24%), Query Frame = 3
Query:   21 NPAKRRWEIFNLGYSVFWVGCFAIIIAFSMYEMFDEVAYFAVLFGLCVPIFAFPLL-----------SVHPSEADV--PVGQRFGVKANVWIAVYSFIGNYWYTHYFYSVLGAKYTFPSWRLNDVPIALIGATIFYFSLYHVLSNMAIRKVVTSFEANAARTVTLVVLVGVMSYATAFMETLTISGFPYYQFEDRDMAYVVGSAFYGIYFVVSFPMFYAFEEWPNKSDKQHGT---TQSSIEGIWSAALNAMGACMLILCLLDFVRLAVGADLVMKG*DSRAILRYQM 836
             P+KR +EI+ L Y+  W+  F  I+AF +YE FDE +Y  V  GL +P    P+L           +++ S  DV  P+ +R+  KAN+W+AVYSFIGNYWYTHYFYSVL AKYT P+ RLN+VPIAL  AT FYFS YHV SNM +RKV T+++ N  R +  + +V   +Y TAFMETLTIS +P Y FEDRDMAY VGSAFYGIYF+VSFP F+ F++  +K D        ++S+    W   +++ G  M+I+ LLD VRL +   LV+   D    L+ ++
Sbjct:   43 EPSKRAYEIYVLCYTPIWIIAFCCIVAFGLYEDFDEWSYMKVCVGLSLPYLLQPILYPSAGTSSSTSTINSSNPDVQRPILERYSFKANLWLAVYSFIGNYWYTHYFYSVLHAKYTMPAHRLNNVPIALYFATHFYFSTYHVFSNMLLRKVTTTYQPNLTRKILYIAVVATFAYFTAFMETLTISAYPDYSFEDRDMAYTVGSAFYGIYFIVSFPAFFVFDQDIDKKDNXXXXXXXSKSTKISAWDTIISSCGYGMIIMILLDIVRLYLDIPLVVGSSDVVCSLKGEI 330          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47142.11817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMG2_ECTSI4.570e-14175.84Cycloeucalenol cycloisomerase n=2 Tax=Ectocarpus T... [more]
A0A836CJT1_9STRA3.040e-9157.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3XQ29_HETAK4.450e-9066.35Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2V4D0_9STRA8.700e-8856.87Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0Y312_AURAN1.150e-8654.02Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A6U4EXF3_9STRA2.330e-8153.18Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A8J5XCH9_DIALT1.230e-7951.15Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A7S0DTR5_9EUKA3.470e-7951.72Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S2P5L6_9STRA2.890e-7850.18Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1E7F4W0_9STRA1.820e-7747.92Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47142contigH-elongata_contig47142:473..3167 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score359.0
Seed ortholog evalue1.7e-96
Seed eggNOG ortholog2880.D7FMG2
Preferred nameCPI1
KEGG rclassRC00994
KEGG koko:K08246
KEGG ReactionR03775
KEGG Pathwayko00100,ko01100,ko01110,map00100,map01100,map01110
GOsGO:0005575,GO:0016020
EggNOG OGs28HCW@1,2QPR8@2759
EC5.5.1.9
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionCycloeucalenol cycloisomerase
Ec32 orthologEc-05_000840.1
Exons5
Model size1547
Cds size699
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930777.7774005-UTR-H-elongata_contig47142:472..5791622930777.7774005-UTR-H-elongata_contig47142:472..579Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47142 473..579 +
1691679565.8493242-UTR-H-elongata_contig47142:472..5791691679565.8493242-UTR-H-elongata_contig47142:472..579Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47142 473..579 +
1622930777.8717546-UTR-H-elongata_contig47142:2426..31671622930777.8717546-UTR-H-elongata_contig47142:2426..3167Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47142 2427..3167 +
1691679565.9144077-UTR-H-elongata_contig47142:2426..31671691679565.9144077-UTR-H-elongata_contig47142:2426..3167Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47142 2427..3167 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930777.791617-CDS-H-elongata_contig47142:579..6001622930777.791617-CDS-H-elongata_contig47142:579..600Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47142 580..600 +
1691679565.8630679-CDS-H-elongata_contig47142:579..6001691679565.8630679-CDS-H-elongata_contig47142:579..600Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47142 580..600 +
1622930777.8112729-CDS-H-elongata_contig47142:945..11031622930777.8112729-CDS-H-elongata_contig47142:945..1103Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47142 946..1103 +
1691679565.8745933-CDS-H-elongata_contig47142:945..11031691679565.8745933-CDS-H-elongata_contig47142:945..1103Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47142 946..1103 +
1622930777.8248484-CDS-H-elongata_contig47142:1422..15671622930777.8248484-CDS-H-elongata_contig47142:1422..1567Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47142 1423..1567 +
1691679565.8857992-CDS-H-elongata_contig47142:1422..15671691679565.8857992-CDS-H-elongata_contig47142:1422..1567Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47142 1423..1567 +
1622930777.843124-CDS-H-elongata_contig47142:1831..20191622930777.843124-CDS-H-elongata_contig47142:1831..2019Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47142 1832..2019 +
1691679565.899028-CDS-H-elongata_contig47142:1831..20191691679565.899028-CDS-H-elongata_contig47142:1831..2019Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47142 1832..2019 +
1622930777.857023-CDS-H-elongata_contig47142:2239..24261622930777.857023-CDS-H-elongata_contig47142:2239..2426Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47142 2240..2426 +
1691679565.906666-CDS-H-elongata_contig47142:2239..24261691679565.906666-CDS-H-elongata_contig47142:2239..2426Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47142 2240..2426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47142.11817.1prot_H-elongata_contig47142.11817.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47142 580..2426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47142.11817.1

>prot_H-elongata_contig47142.11817.1 ID=prot_H-elongata_contig47142.11817.1|Name=mRNA_H-elongata_contig47142.11817.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=233bp
MYEMFDEVAYFAVLFGLCVPIFAFPLLSVHPSEADVPVGQRFGVKANVWI
AVYSFIGNYWYTHYFYSVLGAKYTFPSWRLNDVPIALIGATIFYFSLYHV
LSNMAIRKVVTSFEANAARTVTLVVLVGVMSYATAFMETLTISGFPYYQF
EDRDMAYVVGSAFYGIYFVVSFPMFYAFEEWPNKSDKQHGTTQSSIEGIW
SAALNAMGACMLILCLLDFVRLAVGADLVMKG*
back to top

mRNA from alignment at H-elongata_contig47142:473..3167+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47142.11817.1 ID=mRNA_H-elongata_contig47142.11817.1|Name=mRNA_H-elongata_contig47142.11817.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2695bp|location=Sequence derived from alignment at H-elongata_contig47142:473..3167+ (Himanthalia elongata Himel1 dioecious)
GGCTGGCTTGCGCGGAGAAGAATCCTGCTAAACGGCGATGGGAGATTTTC AACCTTGGCTACTCCGTCTTCTGGGTCGGGTGCTTCGCTATCATCATCGC CTTTTCTATGTACGAGATGTTTGACGAGGTATTGTCCTTTTCTATGCTTA GCCAATTGAGCACGTAAACACTCTGCGTCTTTTCGTCCTCTCTATTTGAT AGTTTCCAATCCTTCCCGCGTATTTTACTCAACGCTTGATACGCTGACGT TTACCTGTCTCCCTTTCCCGTTAGTTTGGTTGAAGTAACCATTGCCAAAG ATAGGTCTGACGTCCAGATTACGAACTTTCAAAGATAGGTCTGACAGCTG GGGTAGGGGTGGCGATAATTCGATTGATGATTGATGATTGATGAGTGCTG ACGTATGTGAAATCACGGTGATCAATCTAAATTTTGTTTTTTGTTGCTTT GTGTATACTGTTTTTCCGTGCAGGTAGCATACTTCGCGGTGTTATTCGGG CTTTGTGTACCGATCTTCGCGTTCCCTCTGCTGAGCGTGCATCCTTCCGA AGCAGACGTCCCCGTCGGTCAGCGGTTCGGCGTGAAGGCCAATGTCTGGA TTGCCGTCTACAGCTTTATCGGCAACTACTGGCAAGCCTTTTGTTGGCGC CGCTGCTTCGATCCTTGAACCTTGAACCACAGCAAATAATTGACCCTTCC TACCGTCCTACTAGAAAACATCAGTGCCCATGATCCGCCGTAAAAGATAT CATCCGCATCGCAGAGCCGTGTTGTAGAAAGTTCTACTCCACTATGTGGC GATGTAGGCCATCCGCGGGGACCGTTGGTTTTAATCTTGTTCGATCGCGG TCAGAGCATCTCGCGCACCTATTTTCTGACATCGGTCCTAAGCTCGTCAG CGGGATCGCCGCCACCTTTTCGCTGTCTTGTCTGCTCCGGGCTGTGTCAG GTACACTCACTACTTTTACTCTGTCTTAGGAGCGAAATATACCTTCCCCA GCTGGCGCCTGAACGACGTGCCTATCGCGCTCATCGGGGCCACCATCTTC TACTTCTCTTTGTACCACGTCCTGAGCAACATGGCCATCCGTAAGGTAAC GAGAAGAGAGGGTTAGTCCAGCAAACCTGTTCGTAAAGCTTACCAGAGGG AGGCGATTCTTATTGGAATCACCTAAGAGCTGCTCGTTCGTGCGTTGCTG GAGACTGAATTACCGCGGATGCAGCTCGCTGCGAGGTATCAGAACATAAA AGTATATACTCCGAATAAATATATATATATATATATATATATCCTGTCGC GTTCGTATTCTCCGAGACCTGCTGATTGTGGCATTGTTTTTTTTCCGCCA TCGTCCCAGGTAGTCACTTCCTTCGAGGCGAACGCGGCACGGACCGTCAC GCTTGTTGTTTTGGTCGGGGTTATGTCGTATGCGACGGCATTTATGGAAA CCCTCACCATTTCCGGGTTCCCGTACTATCAGTTCGAAGACAGAGATATG GCTTACGTGGTCGGATCTGCTTTCTACGGTATTTACTTCGTCGTCAGGTG ACAATCAGTTGGCGTCCGTGTATATCCATATGCGTGCGTCCGTGTATCTG CACGCGCGCGTGTTTATTTATGAGCTGTTCAATATCGGCCAGCTGTGCTT TATTAACAAGTCGTGCTGTATCCACGGTCCACGTTTTGACAGCTTCTGAG TAAGTTGACGTGGAAACGTTTGCAACCCCCTTCCCCACCCTGCCCTGCCC CATGCCTGGAAAATCAGCTTTCCAATGTTCTACGCGTTCGAGGAGTGGCC AAACAAAAGTGACAAGCAGCACGGAACCACTCAAAGCTCCATCGAAGGGA TTTGGAGCGCCGCCTTGAACGCCATGGGGGCATGCATGCTCATCCTATGC CTACTAGACTTTGTTCGTCTCGCCGTAGGAGCGGATCTCGTAATGAAAGG CTAGGACAGTCGCGCAATTTTGCGATATCAAATGCCATAAGTATTATGGT TTTATTCTTCGGTTGCTTAAAAAACTCTATACCCCCCCCTCCCCCACGGG AAAATTGTGAGATTGTGTGTGTTTTACCTCAAACCTTTGCCGACCGGTTG TGATTCAAAACAATCATGCGCTTGGTCCTCACAAAGGAACATGTTCTACC CAGCGTTTTGGGTGCCCTTGGTAGCTACCGTCTGGTGGATCTAGCTCTTC CAACCTCAAGTCAACCCGATTAAGGTTTCGCATACGAAGACTCTCGCTCT CGAGCTTCCCGCAATAGAAACACTAAGATAAGTCAAATGAGTCCCTACGT TTGCCTCCAGTCGAACCGATGAAGTAGGACTTGGATGATACAAGAGCCAA AGCTGTGCGGAAGTTATTCGGAGGTTGAACGTTTGGTATATCCAGTGATA TAGTTCCGTTAGCGTTCAACGTCCACTGGCGTGGAACTGTTCCGCAATTG ACCAGATAGTTAGAAATAGTTTTGCTTCAATATAGTTCGGTTAGTTCCGG ATGCTTCCCGGCATGTCCAGAAGGTAGCAATTGTGTCGTTATCGCATATA CGGTAGCAGAGTATGAATCGACCGGATTTTGTTGCCTTCTCCTTATGGCC AGCTGAACAGGGAAAACGGAAGTATTCGCAAACCGGCGTGGCGCCCCCTT ACGTGTCTTGCCGGTTTGCGCGATTTAATGCAAATTGATATAAAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig47142:473..3167+

>mRNA_H-elongata_contig47142.11817.1 ID=mRNA_H-elongata_contig47142.11817.1|Name=mRNA_H-elongata_contig47142.11817.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1398bp|location=Sequence derived from alignment at H-elongata_contig47142:473..3167+ (Himanthalia elongata Himel1 dioecious)
ATGTACGAGATGTTTGACGAGATGTACGAGATGTTTGACGAGGTAGCATA
CTTCGCGGTGTTATTCGGGCTTTGTGTACCGATCTTCGCGTTCCCTCTGC
TGAGCGTGCATCCTTCCGAAGCAGACGTCCCCGTCGGTCAGCGGTTCGGC
GTGAAGGCCAATGTCTGGATTGCCGTCTACAGCTTTATCGGCAACTACTG
GTAGCATACTTCGCGGTGTTATTCGGGCTTTGTGTACCGATCTTCGCGTT
CCCTCTGCTGAGCGTGCATCCTTCCGAAGCAGACGTCCCCGTCGGTCAGC
GGTTCGGCGTGAAGGCCAATGTCTGGATTGCCGTCTACAGCTTTATCGGC
AACTACTGGTACACTCACTACTTTTACTCTGTCTTAGGAGCGAAATATAC
CTTCCCCAGCTGGCGCCTGAACGACGTGCCTATCGCGCTCATCGGGGCCA
CCATCTTCTACTTCTCTTTGTACCACGTCCTGAGCAACATGGCCATCCGT
AAGGTACACTCACTACTTTTACTCTGTCTTAGGAGCGAAATATACCTTCC
CCAGCTGGCGCCTGAACGACGTGCCTATCGCGCTCATCGGGGCCACCATC
TTCTACTTCTCTTTGTACCACGTCCTGAGCAACATGGCCATCCGTAAGGT
AGTCACTTCCTTCGAGGCGAACGCGGCACGGACCGTCACGCTTGTTGTTT
TGGTCGGGGTTATGTCGTATGCGACGGCATTTATGGAAACCCTCACCATT
TCCGGGTTCCCGTACTATCAGTTCGAAGACAGAGATATGGCTTACGTGGT
CGGATCTGCTTTCTACGGTATTTACTTCGTCGTCAGGTAGTCACTTCCTT
CGAGGCGAACGCGGCACGGACCGTCACGCTTGTTGTTTTGGTCGGGGTTA
TGTCGTATGCGACGGCATTTATGGAAACCCTCACCATTTCCGGGTTCCCG
TACTATCAGTTCGAAGACAGAGATATGGCTTACGTGGTCGGATCTGCTTT
CTACGGTATTTACTTCGTCGTCAGCTTTCCAATGTTCTACGCGTTCGAGG
AGTGGCCAAACAAAAGTGACAAGCAGCACGGAACCACTCAAAGCTCCATC
GAAGGGATTTGGAGCGCCGCCTTGAACGCCATGGGGGCATGCATGCTCAT
CCTATGCCTACTAGACTTTGTTCGTCTCGCCGTAGGAGCGGATCTCGTAA
TGAAAGGCTAGCTTTCCAATGTTCTACGCGTTCGAGGAGTGGCCAAACAA
AAGTGACAAGCAGCACGGAACCACTCAAAGCTCCATCGAAGGGATTTGGA
GCGCCGCCTTGAACGCCATGGGGGCATGCATGCTCATCCTATGCCTACTA
GACTTTGTTCGTCTCGCCGTAGGAGCGGATCTCGTAATGAAAGGCTAG
back to top