mRNA_H-elongata_contig47103.11813.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47103.11813.1
Unique NamemRNA_H-elongata_contig47103.11813.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47103.11813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47103contigH-elongata_contig47103:377..2818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size1294
Cds size741
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47103.11813.1prot_H-elongata_contig47103.11813.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47103 438..2326 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930777.0830665-UTR-H-elongata_contig47103:376..4371622930777.0830665-UTR-H-elongata_contig47103:376..437Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47103 377..437 +
1691679565.5908446-UTR-H-elongata_contig47103:376..4371691679565.5908446-UTR-H-elongata_contig47103:376..437Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47103 377..437 +
1622930777.1662188-UTR-H-elongata_contig47103:2326..28181622930777.1662188-UTR-H-elongata_contig47103:2326..2818Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47103 2327..2818 +
1691679565.6202428-UTR-H-elongata_contig47103:2326..28181691679565.6202428-UTR-H-elongata_contig47103:2326..2818Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig47103 2327..2818 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930777.1146245-CDS-H-elongata_contig47103:437..8121622930777.1146245-CDS-H-elongata_contig47103:437..812Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47103 438..812 +
1691679565.6021118-CDS-H-elongata_contig47103:437..8121691679565.6021118-CDS-H-elongata_contig47103:437..812Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47103 438..812 +
1622930777.144319-CDS-H-elongata_contig47103:1960..23261622930777.144319-CDS-H-elongata_contig47103:1960..2326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47103 1961..2326 +
1691679565.6111445-CDS-H-elongata_contig47103:1960..23261691679565.6111445-CDS-H-elongata_contig47103:1960..2326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47103 1961..2326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47103.11813.1

>prot_H-elongata_contig47103.11813.1 ID=prot_H-elongata_contig47103.11813.1|Name=mRNA_H-elongata_contig47103.11813.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=247bp
MKIDSIRASTVATLATFIALSSTRPASSAAAADASGFADKGAVKAAKQAT
NEVLATCTEEDFLASGFEFTDTESNTSYTGNYTGCYTIADTNDDDEELSV
YSLSGNLTTGGATFYASNNNDGLDEPIWYFVNAESGASVSDLSGSFLCYD
LDLNSAADIHPAEVTSWGVIPDSATSSTSSVTCDISITCGCSSSDDDDEE
DDDDDDAEDVDDAANAAFGAWSWSNHYVAVASGGSVVAGIFASSVL*
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mRNA from alignment at H-elongata_contig47103:377..2818+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47103.11813.1 ID=mRNA_H-elongata_contig47103.11813.1|Name=mRNA_H-elongata_contig47103.11813.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2442bp|location=Sequence derived from alignment at H-elongata_contig47103:377..2818+ (Himanthalia elongata Himel1 dioecious)
GAACGAACGGTAACTTCCTTCTTTTTGATCCACTAAAAGCAGCTGTACAC
ACACAGGCAGGATGAAGATCGATTCGATTCGCGCATCGACGGTGGCGACG
CTTGCCACGTTTATCGCCCTTTCATCCACGCGACCAGCATCATCAGCGGC
AGCTGCTGATGCCTCGGGCTTCGCGGACAAGGGTGCCGTCAAGGCAGCCA
AGCAAGCCACGAACGAGGTACTCGCCACCTGCACCGAGGAGGACTTTTTG
GCGTCGGGTTTCGAGTTCACGGACACGGAGTCCAACACCTCCTACACGGG
CAACTACACGGGGTGCTACACGATCGCCGACACGAACGACGACGACGAAG
AACTCTCCGTGTACAGTCTGTCGGGAAACTTGACCACCGGCGGAGCGACT
TTCTACGCCTCAAATAACAATGATGGGCTGGACGAGGTGCGTTTTTCTGC
GTTCGTGCGTGCGTTATGTCCGAACGTTGTATAGCGGATGCCATTACCTG
CAGCACACGCACTACATACAGTAAAGAAACGCGGACGACTACTACTATTA
TTAGTGTGGCTCTAGGATACCTCAATAACCAATGCTCGTGGTTTTACCCT
AAATTGTGTTTGTGGCCATCAACTAATATGTAGCCTATAGTCTGTAGTAT
ATAGTATATAGCATATATTATATAGTATATAGTATATAGCATATAGTATA
TAGTGTATAGTATATAGTATTGATCAACCGGATATGGTCGCCAATCCTGC
TCTAATAGTAGATATGCCAATCCAACGTCTTCAGGGATAGCTCCCCATAA
GGGGTGAGGGGGGGAGGGGGGGTACTTTGCAAAACGGTGTGGCATCTCCT
TACGTACCATGTCGGTTTGCGCGGTCTAATGCAATTTGATAAAGAAGGAA
AGTTAATTTTCCCTTTCCCCGTTCGCGCTTGATAATTTAGTCACGCAAGA
CGGGCTCGACCGCCCCGTCCCGCGTAAGCCTGATCATTCTCATCTCCCAG
GCTGGAATCGGTATAACCCTAACACTCCTCTAACCATCCTTATTGGAAAG
CATTCACTAGCGTTCACTTTCATTCACTCGCGTTCACTATTATTAACTCG
CGAGGCAATCGTAAAGCCCAGGTCTGTTTTGTCTGCTGAGCAGAGGTCTT
ATCGAGCGGTCGCTTTGCGTCTGTGTCCCAGCCGCGGCGGTGGCGATTTA
TCGCACACGTCGCCAGTATTGCGATCGATCGTGTGGTTATAAATATAATA
ATAACGGTCGAGACGTCCCAACGGTCTATGAACCCGTAAAATCCTCCCCG
CGCGGGACTGTAAAAAGACAATTGCGTGCCCTTCTTGAAGGTCCATGATC
ATGATGATGTAATGCCGCCGTTGATTTTCCGTGATGACGAGATCATCACC
AATCAATCGACTGGGGGTGCTGATTCGATGATTTCACTCTCCCGTCTTGA
TCTTCCTCTTCTAGTTTATGTTCCCCGCCTCGTTAATTCCAAACGCTCCG
TAATAGACTATACAACGACCAACCAAGCTACAATGCACGTGCGACGTTAC
ATATAAAATATGTATGCTTGTGTTGATGTCACAGCCGATCTGGTACTTCG
TCAACGCTGAATCCGGGGCCTCGGTGTCCGACCTTTCTGGAAGTTTCCTT
TGCTACGACCTCGACCTCAACTCGGCCGCGGACATACATCCGGCGGAGGT
GACCAGCTGGGGAGTGATCCCCGATTCCGCGACGTCGTCGACCTCGAGCG
TCACGTGCGATATCTCCATCACCTGCGGATGTTCCTCTTCCGACGACGAC
GATGAGGAGGACGATGACGATGACGACGCAGAAGATGTGGACGACGCGGC
AAACGCGGCCTTCGGAGCTTGGAGTTGGAGCAACCACTACGTCGCGGTCG
CGAGTGGTGGTAGCGTCGTCGCCGGGATCTTCGCCTCGTCGGTTCTGTGA
AGCTCGACTTGGTAGCAGTTCGTACATATATACCGATACATAACTATAAT
GCTAGTAGTGATGCGTGGGATGCTACTTGGAAGAACGATTGGAACGATGA
TTGTCCACCAGCCGCCGACAAAGCTCAGCGCGCGTTACGTTTTAGACATC
TTGCCATGGTTCGTGGACATTATTTTTAGTTGACAGTCTTGTTACTGTGG
CGTGGCGGGGGAATGCCGAGGTCGGGGCGATCGGACTCCTTCTTCTGTGT
ATCGGTTGATTTATTCCTAACTAATCAGGGTTTCATAGCGAAGGGGGCAT
GATCCGTGTCCACCAAGGGACTTTTTAGAGAAACAAAAGAAGGAAAACAA
AATGGCGCTTTTTCCTAGTAATTTATTACTGACGTTGTGCATAAAACCGG
TGCGGCGCCCCTTTGTGCGTCAAGCTGGTTTGCGCAGTCTAATGTAATTT
GAAAAAGAGGGAGGGGAAATGGCCAGGGGGAACTGCTGTACA
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Coding sequence (CDS) from alignment at H-elongata_contig47103:377..2818+

>mRNA_H-elongata_contig47103.11813.1 ID=mRNA_H-elongata_contig47103.11813.1|Name=mRNA_H-elongata_contig47103.11813.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1482bp|location=Sequence derived from alignment at H-elongata_contig47103:377..2818+ (Himanthalia elongata Himel1 dioecious)
ATGAAGATCGATTCGATTCGCGCATCGACGGTGGCGACGCTTGCCACGTT
TATCGCCCTTTCATCCACGCGACCAGCATCATCAGCGGCAGCTGCTGATG
CCTCGGGCTTCGCGGACAAGGGTGCCGTCAAGGCAGCCAAGCAAGCCACG
AACGAGGTACTCGCCACCTGCACCGAGGAGGACTTTTTGGCGTCGGGTTT
CGAGTTCACGGACACGGAGTCCAACACCTCCTACACGGGCAACTACACGG
GGTGCTACACGATCGCCGACACGAACGACGACGACGAAGAACTCTCCGTG
TACAGTCTGTCGGGAAACTTGACCACCGGCGGAGCGACTTTCTACGCCTC
AAATAACAATGATGGGCTGGACGAGATGAAGATCGATTCGATTCGCGCAT
CGACGGTGGCGACGCTTGCCACGTTTATCGCCCTTTCATCCACGCGACCA
GCATCATCAGCGGCAGCTGCTGATGCCTCGGGCTTCGCGGACAAGGGTGC
CGTCAAGGCAGCCAAGCAAGCCACGAACGAGGTACTCGCCACCTGCACCG
AGGAGGACTTTTTGGCGTCGGGTTTCGAGTTCACGGACACGGAGTCCAAC
ACCTCCTACACGGGCAACTACACGGGGTGCTACACGATCGCCGACACGAA
CGACGACGACGAAGAACTCTCCGTGTACAGTCTGTCGGGAAACTTGACCA
CCGGCGGAGCGACTTTCTACGCCTCAAATAACAATGATGGGCTGGACGAG
CCGATCTGGTACTTCGTCAACGCTGAATCCGGGGCCTCGGTGTCCGACCT
TTCTGGAAGTTTCCTTTGCTACGACCTCGACCTCAACTCGGCCGCGGACA
TACATCCGGCGGAGGTGACCAGCTGGGGAGTGATCCCCGATTCCGCGACG
TCGTCGACCTCGAGCGTCACGTGCGATATCTCCATCACCTGCGGATGTTC
CTCTTCCGACGACGACGATGAGGAGGACGATGACGATGACGACGCAGAAG
ATGTGGACGACGCGGCAAACGCGGCCTTCGGAGCTTGGAGTTGGAGCAAC
CACTACGTCGCGGTCGCGAGTGGTGGTAGCGTCGTCGCCGGGATCTTCGC
CTCGTCGGTTCTGTGACCGATCTGGTACTTCGTCAACGCTGAATCCGGGG
CCTCGGTGTCCGACCTTTCTGGAAGTTTCCTTTGCTACGACCTCGACCTC
AACTCGGCCGCGGACATACATCCGGCGGAGGTGACCAGCTGGGGAGTGAT
CCCCGATTCCGCGACGTCGTCGACCTCGAGCGTCACGTGCGATATCTCCA
TCACCTGCGGATGTTCCTCTTCCGACGACGACGATGAGGAGGACGATGAC
GATGACGACGCAGAAGATGTGGACGACGCGGCAAACGCGGCCTTCGGAGC
TTGGAGTTGGAGCAACCACTACGTCGCGGTCGCGAGTGGTGGTAGCGTCG
TCGCCGGGATCTTCGCCTCGTCGGTTCTGTGA
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