mRNA_H-elongata_contig47100.11812.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47100.11812.1
Unique NamemRNA_H-elongata_contig47100.11812.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig47100.11812.1 vs. uniprot
Match: D7FTJ7_ECTSI (UDENN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTJ7_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 2.470e-44
Identity = 84/121 (69.42%), Postives = 99/121 (81.82%), Query Frame = 1 
Query:    1 VRYSQLEAVKKQPMNEAVFVHLERGELTGTAGMDPVPDICDGVKEHLASATQKLDRALGKLAILTMSRGSSSKTGQERWPREERDSRGGWAREGISDTASALFAEVKAIYGRAKKTKPGLG 363
            VR SQLE+VK+QPM+EAVFVHL+RGELTG+ GMDPVPDICDGVKEHLASATQKLDRALGKLA+LT      +K G +R PR+ER    G  ++GI+DTAS LFAEVKAI+ +AKK +P  G
Sbjct:  225 VRTSQLESVKRQPMSEAVFVHLDRGELTGSTGMDPVPDICDGVKEHLASATQKLDRALGKLALLTR----GNKDGGDRGPRDERVGSKGMTKDGINDTASTLFAEVKAIFSKAKKQRPAGG 341
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BLAST of mRNA_H-elongata_contig47100.11812.1 vs. uniprot
Match: A0A6H5K5D8_9PHAE (UDENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5D8_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 2.370e-43
Identity = 83/121 (68.60%), Postives = 98/121 (80.99%), Query Frame = 1 
Query:    1 VRYSQLEAVKKQPMNEAVFVHLERGELTGTAGMDPVPDICDGVKEHLASATQKLDRALGKLAILTMSRGSSSKTGQERWPREERDSRGGWAREGISDTASALFAEVKAIYGRAKKTKPGLG 363
            VR SQLE+VK+QPM+EAVFVHL+RGELTG+ GM PVPDICDGVKEHLASATQKLDRALGKLA+LT      +K G +R PR+ER    G  ++GI+DTAS LFAEVKAI+ +AKK +P  G
Sbjct:  327 VRTSQLESVKRQPMSEAVFVHLDRGELTGSTGMAPVPDICDGVKEHLASATQKLDRALGKLALLTR---GGNKDGGDRGPRDERVGSKGMTKDGINDTASTLFAEVKAIFSKAKKQRPAGG 444
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47100.11812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTJ7_ECTSI2.470e-4469.42UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K5D8_9PHAE2.370e-4368.60UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47100contigH-elongata_contig47100:459..2928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.2
Seed ortholog evalue1.9e-38
Seed eggNOG ortholog2880.D7FTJ7
KEGG koko:K20160,ko:K20161
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG3569@1,KOG3569@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size366
Cds size366
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47100.11812.1prot_H-elongata_contig47100.11812.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47100 459..2928 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930777.0009437-CDS-H-elongata_contig47100:458..5821622930777.0009437-CDS-H-elongata_contig47100:458..582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47100 459..582 +
1691679565.547834-CDS-H-elongata_contig47100:458..5821691679565.547834-CDS-H-elongata_contig47100:458..582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47100 459..582 +
1622930777.018057-CDS-H-elongata_contig47100:1476..15881622930777.018057-CDS-H-elongata_contig47100:1476..1588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47100 1477..1588 +
1691679565.5680115-CDS-H-elongata_contig47100:1476..15881691679565.5680115-CDS-H-elongata_contig47100:1476..1588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47100 1477..1588 +
1622930777.0332828-CDS-H-elongata_contig47100:2798..29281622930777.0332828-CDS-H-elongata_contig47100:2798..2928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47100 2799..2928 +
1691679565.580707-CDS-H-elongata_contig47100:2798..29281691679565.580707-CDS-H-elongata_contig47100:2798..2928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47100 2799..2928 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47100.11812.1

>prot_H-elongata_contig47100.11812.1 ID=prot_H-elongata_contig47100.11812.1|Name=mRNA_H-elongata_contig47100.11812.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
VRYSQLEAVKKQPMNEAVFVHLERGELTGTAGMDPVPDICDGVKEHLASA
TQKLDRALGKLAILTMSRGSSSKTGQERWPREERDSRGGWAREGISDTAS
ALFAEVKAIYGRAKKTKPGLG*
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mRNA from alignment at H-elongata_contig47100:459..2928+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47100.11812.1 ID=mRNA_H-elongata_contig47100.11812.1|Name=mRNA_H-elongata_contig47100.11812.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2470bp|location=Sequence derived from alignment at H-elongata_contig47100:459..2928+ (Himanthalia elongata Himel1 dioecious)
GTGCGTTATTCCCAGCTTGAGGCCGTGAAGAAGCAGCCCATGAATGAGGC
GGTGTTTGTTCACCTTGAGAGGGGAGAGCTAACCGGGACTGCGGGGATGG
ACCCCGTGCCCGATATCTGCGATGGTGAGGCGGGAACTTGTAGCCGGTTA
GGGATTTGATGAGTCTGTCCCCGTGTTTTGAAAGGGGGCGTTGTACTGTA
ACTAGGCAAATGCACGAGTAAAGCTCAGTTGCTGTAACGTAAAACAAAGT
AATAGGTTAAGATGTGATGATCGTGTTGGCTATTTAGTTCTCTCTCGATG
TTGGGACAAAACTTATTATTGCTAGTCTGACGACGATGACGTCATGACGT
ACGCTCTTGCCGGTAGGGAAGGAAAAATAGTCATCCCGTCGCTCGGTAGG
GGCGTTTCGCGCGACGACGCTTGGTACCTTTGAATTCCAAATATCGTGGC
GAGACATTTTCGCGCGACCCAATTTCCACTCAATTTAACACTAGAAACCC
CGGGGATGTTGAAATCACTTTGTTTTTGTAATAATGCGTCAGTACGTGAC
GAGAGAAAGCCTGTTAATGCGGAACTCGTGAGTTCAAATCTTATCAGGAT
GGTTCCATTTATTTCTTCTGTAGCGGTCATAGTCTAAACTATACTATTAT
CATATTATATCACATTATATCATATAACATGTACCGGTATCCTTTATTGT
ACTCTCCTAGGCTATACTATATACTATACTAGTGTTCGGAAGTAAAAACA
TTTAAACCATTGTATTCTGTATTCTTGGCGTGTAGTAGTGCTGTTAATAC
CTGGTAACTTGCATCCTTTGCAATAAAAAATCGTAGGGAGGCGTTATCCA
AACCAGGGAGATTTGAGTTGATAGATAAATAGAACCCTCAGGACCAGAAG
GCTGTAGAGGGATAGGCAATGATGCCGTGGGTGATACTGGTATTATTAAT
AATAATGACCTATATACTAAAGCAAAAACAAAACGTGTTACTCTGCGTTG
CGTTGTGACGCCTTCCAGGAGTGAAGGAACACCTTGCCTCAGCAACCCAA
AAGCTCGACAGGGCGCTGGGGAAGCTTGCAATCTTGACGATGTCGAGGGG
AAGCTCTAGCAAGACTGGCCAAGAAAGATGGTCAGTGCTGCTGCTGCTGC
TGCATCAAAGAGGCATAATATTAACGCAACACCGCTAGAGAGAGAGGCGG
CACAAGATACAACCTGAAGTCGTATCTCCCCCTCCGTCTTGGCCTAATAT
ATCAAACTCTAATGGTTGGGGATACTCTCATCACACGGGGACAGGGGACA
GGGGGGATATCATATACGGAACATGAATACATATCACTCAGCTACGGCGT
CTTCGATGTGCTGCTGAAATAGATGCGAAGACGCCGGAGCTGCGTTGGCC
CGGGCGCCCCCCCCCCCCAAATGCCCAATTGTTTGTTTTTGCCTTTGCTT
TTCATCGCAACTTTTATATATGCTCCTATATTATATTTAGTGTATATATA
GAGAGAACCAATTCCACCTACCATCCCATCTTTCCCTGGCTGGATAACGC
CTACGTACGATTTTTATCGCTATCAATACCAGTTCAACACCTTCGGCTTT
AACCAATGGTGGAGCTACAAAGCCAGAAAAGAAGCAACCATACTATCATA
TTGGTTTTACTATATGGTTACTGAACCAGTAACACTACTCGGCCGACGGG
TTTCGATAGAGAAGTACGTGTTTGAAGCCGATTTTTTACTATTTTTCATG
TTTTTTGGCCGGAGGGGAAACGGGAACGGGGGTTACTTGGTCAAAAGTGT
TTTTATGATGAGAGGAGTTTTGAGGCCAAATGGACCCTCAATATTTCCGA
TTTGATGTAGGGGCTGGATTCGGCTGGATCTTTTTGTCTCGACACAGAAC
ACACACTGCATGAACTCTGAACTATACCGTTACCAAGAAAAAGCCAGCTT
TAGAGTTTCATACCACATGCGGGAAGAACCAATCGTTGATGGACAGGAGA
AGGAGGTACGCATGTAAACTCTTGTTCGTAAGGGGCTGTCGGTGATATCT
GCAGCGCGGGACTGTCGGTGTTATTACTCGCACGGGACTGTCGGTGGTAT
CAATCGCACGGGACTGTCGGTGGTATCAATCGCACGGGACTGTCGGTGGT
ATTAGTCGCACGGGACTTTCGGTGGTATCTGTCGCACGGGACTGTCGATG
TATGACATCTATCGGAAGAAATTTCATATCCCTGCTTGATCCATGAGTCT
TAAAATATGTTCCCCCTGGCACAGTGAGCGTTCTTCTTCTGCTGCCACCC
GCTGGTCCCGTGGTGTGGGGGTTTCTGGTGACTTGATCAGGCCTCGTGAG
GAGCGGGACAGCAGGGGCGGGTGGGCGAGAGAGGGCATCAGCGACACCGC
TAGTGCTCTATTTGCCGAGGTTAAGGCGATCTACGGAAGGGCGAAGAAAA
CCAAGCCGGGACTTGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig47100:459..2928+

>mRNA_H-elongata_contig47100.11812.1 ID=mRNA_H-elongata_contig47100.11812.1|Name=mRNA_H-elongata_contig47100.11812.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig47100:459..2928+ (Himanthalia elongata Himel1 dioecious)
GTGCGTTATTCCCAGCTTGAGGCCGTGAAGAAGCAGCCCATGAATGAGGC
GGTGTTTGTTCACCTTGAGAGGGGAGAGCTAACCGGGACTGCGGGGATGG
ACCCCGTGCCCGATATCTGCGATGGTGCGTTATTCCCAGCTTGAGGCCGT
GAAGAAGCAGCCCATGAATGAGGCGGTGTTTGTTCACCTTGAGAGGGGAG
AGCTAACCGGGACTGCGGGGATGGACCCCGTGCCCGATATCTGCGATGGA
GTGAAGGAACACCTTGCCTCAGCAACCCAAAAGCTCGACAGGGCGCTGGG
GAAGCTTGCAATCTTGACGATGTCGAGGGGAAGCTCTAGCAAGACTGGCC
AAGAAAGATGGAGTGAAGGAACACCTTGCCTCAGCAACCCAAAAGCTCGA
CAGGGCGCTGGGGAAGCTTGCAATCTTGACGATGTCGAGGGGAAGCTCTA
GCAAGACTGGCCAAGAAAGATGGCCTCGTGAGGAGCGGGACAGCAGGGGC
GGGTGGGCGAGAGAGGGCATCAGCGACACCGCTAGTGCTCTATTTGCCGA
GGTTAAGGCGATCTACGGAAGGGCGAAGAAAACCAAGCCGGGACTTGGGT
GAGCCTCGTGAGGAGCGGGACAGCAGGGGCGGGTGGGCGAGAGAGGGCAT
CAGCGACACCGCTAGTGCTCTATTTGCCGAGGTTAAGGCGATCTACGGAA
GGGCGAAGAAAACCAAGCCGGGACTTGGGTGA
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