mRNA_H-elongata_contig4708.11810.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig4708.11810.1 vs. uniprot
Match: A0A6H5KPT0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPT0_9PHAE) HSP 1 Score: 151 bits (382), Expect = 7.160e-43 Identity = 71/153 (46.41%), Postives = 103/153 (67.32%), Query Frame = 1
Query: 4 VTLIVCAHVDDLVVTAKDKETFYVFYAQLKEEFPVNDMGNLSWYLGCAFECDKVEGVVKMTQTAFVDSLVDRFDINYKYEIQTPAFVELDLGPKRIDEKENDWPYNQAVGGLLWISGLRRPDIASAVRAVARHAHNSAARHWKAVRKIISYLK 462
V +I+ +VDD++V D E F F A L ++FP ++G W+ GCA E D G ++++QTA++DS+V+RFD+ K + PA DLGPKR DE+ +WP +A+G ++W+S RPD++ AVRAVARHAH A RHW A++KI+ YLK
Sbjct: 6 VVMIIVIYVDDILVAGSD-EDFEEFLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDV--KSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLK 155
BLAST of mRNA_H-elongata_contig4708.11810.1 vs. uniprot
Match: A0A6H5KBH1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH1_9PHAE) HSP 1 Score: 146 bits (368), Expect = 2.180e-41 Identity = 68/153 (44.44%), Postives = 102/153 (66.67%), Query Frame = 1
Query: 4 VTLIVCAHVDDLVVTAKDKETFYVFYAQLKEEFPVNDMGNLSWYLGCAFECDKVEGVVKMTQTAFVDSLVDRFDINYKYEIQTPAFVELDLGPKRIDEKENDWPYNQAVGGLLWISGLRRPDIASAVRAVARHAHNSAARHWKAVRKIISYLK 462
V +I+ +VDD++V D++ + A L ++FP ++G W+ GCA E D G ++++QTA++DS+V+RFD+ I PA DLGPKR DE+ +WP +A+G ++W+S RPD++ AVRAVARHAH A RHW A++KI+ YLK
Sbjct: 6 VVMIIVIYVDDILVAGSDEDCEELL-ASLNKKFPTKNLGECQWFDGCAIERDADAGTLRISQTAYIDSMVERFDVQSTSRI--PATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLK 155
BLAST of mRNA_H-elongata_contig4708.11810.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE) HSP 1 Score: 146 bits (369), Expect = 6.740e-39 Identity = 68/153 (44.44%), Postives = 103/153 (67.32%), Query Frame = 1
Query: 4 VTLIVCAHVDDLVVTAKDKETFYVFYAQLKEEFPVNDMGNLSWYLGCAFECDKVEGVVKMTQTAFVDSLVDRFDINYKYEIQTPAFVELDLGPKRIDEKENDWPYNQAVGGLLWISGLRRPDIASAVRAVARHAHNSAARHWKAVRKIISYLK 462
V +I+ +VDD++V D++ + A L ++FP ++G W+ GCA E D G ++++QTA++DS+V+RFD+ K + PA DLGPKR DE+ +WP +A+G ++W+S RPD++ AVRAVARHAH A RHW A++KI+ YLK
Sbjct: 213 VVMIIVIYVDDILVAGSDEDCEELL-ASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDV--KSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLK 362
BLAST of mRNA_H-elongata_contig4708.11810.1 vs. uniprot
Match: A0A6H5JVD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD4_9PHAE) HSP 1 Score: 144 bits (364), Expect = 1.950e-38 Identity = 67/153 (43.79%), Postives = 102/153 (66.67%), Query Frame = 1
Query: 4 VTLIVCAHVDDLVVTAKDKETFYVFYAQLKEEFPVNDMGNLSWYLGCAFECDKVEGVVKMTQTAFVDSLVDRFDINYKYEIQTPAFVELDLGPKRIDEKENDWPYNQAVGGLLWISGLRRPDIASAVRAVARHAHNSAARHWKAVRKIISYLK 462
V +I+ +VDD++V D++ + A L ++FP ++G W+ GCA E D G ++++QTA++DS+V+RFD+ I PA DLGP+R DE+ +WP +A+G ++W+S RPD++ AVRAVARHAH A RHW A++KI+ YLK
Sbjct: 149 VVMIIVIYVDDILVAGSDEDCEELL-ASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVQSTSRI--PATPGADLGPQREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLK 298
BLAST of mRNA_H-elongata_contig4708.11810.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE) HSP 1 Score: 147 bits (370), Expect = 5.170e-38 Identity = 69/153 (45.10%), Postives = 103/153 (67.32%), Query Frame = 1
Query: 4 VTLIVCAHVDDLVVTAKDKETFYVFYAQLKEEFPVNDMGNLSWYLGCAFECDKVEGVVKMTQTAFVDSLVDRFDINYKYEIQTPAFVELDLGPKRIDEKENDWPYNQAVGGLLWISGLRRPDIASAVRAVARHAHNSAARHWKAVRKIISYLK 462
V +I+ +VDD++V D++ + A L ++FP ++G W+ GCA E D G ++++QTA++DS+V+RFD+ K + PA DLGPKR D+K +WP +AVG ++W+S RPD++ AVRAVARHAH A RHW A++KI+ YLK
Sbjct: 517 VVMIIVIYVDDILVAGSDEDCEELL-ASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDV--KSTSRIPATPGADLGPKREDDKGGEWPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLK 666
BLAST of mRNA_H-elongata_contig4708.11810.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 146 bits (369), Expect = 7.860e-38 Identity = 68/153 (44.44%), Postives = 103/153 (67.32%), Query Frame = 1
Query: 4 VTLIVCAHVDDLVVTAKDKETFYVFYAQLKEEFPVNDMGNLSWYLGCAFECDKVEGVVKMTQTAFVDSLVDRFDINYKYEIQTPAFVELDLGPKRIDEKENDWPYNQAVGGLLWISGLRRPDIASAVRAVARHAHNSAARHWKAVRKIISYLK 462
V +I+ +VDD++V D++ + A L ++FP ++G W+ GCA E D G ++++QTA++DS+V+RFD+ K + PA DLGPKR DE+ +WP +A+G ++W+S RPD++ AVRAVARHAH A RHW A++KI+ YLK
Sbjct: 926 VVMIIVIYVDDILVAGSDEDCEELL-ASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDV--KSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLK 1075
BLAST of mRNA_H-elongata_contig4708.11810.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 146 bits (369), Expect = 8.000e-38 Identity = 68/153 (44.44%), Postives = 103/153 (67.32%), Query Frame = 1
Query: 4 VTLIVCAHVDDLVVTAKDKETFYVFYAQLKEEFPVNDMGNLSWYLGCAFECDKVEGVVKMTQTAFVDSLVDRFDINYKYEIQTPAFVELDLGPKRIDEKENDWPYNQAVGGLLWISGLRRPDIASAVRAVARHAHNSAARHWKAVRKIISYLK 462
V +I+ +VDD++V D++ + A L ++FP ++G W+ GCA E D G ++++QTA++DS+V+RFD+ K + PA DLGPKR DE+ +WP +A+G ++W+S RPD++ AVRAVARHAH A RHW A++KI+ YLK
Sbjct: 1305 VVMIIVIYVDDILVAGSDEDCEELL-ASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDV--KSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLK 1454
BLAST of mRNA_H-elongata_contig4708.11810.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 146 bits (369), Expect = 8.020e-38 Identity = 68/153 (44.44%), Postives = 103/153 (67.32%), Query Frame = 1
Query: 4 VTLIVCAHVDDLVVTAKDKETFYVFYAQLKEEFPVNDMGNLSWYLGCAFECDKVEGVVKMTQTAFVDSLVDRFDINYKYEIQTPAFVELDLGPKRIDEKENDWPYNQAVGGLLWISGLRRPDIASAVRAVARHAHNSAARHWKAVRKIISYLK 462
V +I+ +VDD++V D++ + A L ++FP ++G W+ GCA E D G ++++QTA++DS+V+RFD+ K + PA DLGPKR DE+ +WP +A+G ++W+S RPD++ AVRAVARHAH A RHW A++KI+ YLK
Sbjct: 1325 VVMIIVIYVDDILVAGSDEDCEELL-ASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDV--KSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLK 1474
BLAST of mRNA_H-elongata_contig4708.11810.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 146 bits (369), Expect = 8.040e-38 Identity = 68/153 (44.44%), Postives = 103/153 (67.32%), Query Frame = 1
Query: 4 VTLIVCAHVDDLVVTAKDKETFYVFYAQLKEEFPVNDMGNLSWYLGCAFECDKVEGVVKMTQTAFVDSLVDRFDINYKYEIQTPAFVELDLGPKRIDEKENDWPYNQAVGGLLWISGLRRPDIASAVRAVARHAHNSAARHWKAVRKIISYLK 462
V +I+ +VDD++V D++ + A L ++FP ++G W+ GCA E D G ++++QTA++DS+V+RFD+ K + PA DLGPKR DE+ +WP +A+G ++W+S RPD++ AVRAVARHAH A RHW A++KI+ YLK
Sbjct: 1468 VVMIIVIYVDDILVAGSDEDCEELL-ASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDV--KSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLK 1617
BLAST of mRNA_H-elongata_contig4708.11810.1 vs. uniprot
Match: A0A6H5K274_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K274_9PHAE) HSP 1 Score: 144 bits (364), Expect = 2.920e-37 Identity = 68/153 (44.44%), Postives = 101/153 (66.01%), Query Frame = 1
Query: 4 VTLIVCAHVDDLVVTAKDKETFYVFYAQLKEEFPVNDMGNLSWYLGCAFECDKVEGVVKMTQTAFVDSLVDRFDINYKYEIQTPAFVELDLGPKRIDEKENDWPYNQAVGGLLWISGLRRPDIASAVRAVARHAHNSAARHWKAVRKIISYLK 462
V +I+ +VDD++V D++ + A L ++FP ++G W+ GCA E D G ++++QTA++DS+V RFD+ I PA DLGPKR DE+ +WP +A+G ++W+S RPD++ AVRAVARHAH A RHW A++KI+ YLK
Sbjct: 437 VVMIIVIYVDDILVAGSDEDCEELL-ASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVARFDVQSTSRI--PATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLK 586 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4708.11810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig4708.11810.1 >prot_H-elongata_contig4708.11810.1 ID=prot_H-elongata_contig4708.11810.1|Name=mRNA_H-elongata_contig4708.11810.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp EVTLIVCAHVDDLVVTAKDKETFYVFYAQLKEEFPVNDMGNLSWYLGCAFback to top mRNA from alignment at H-elongata_contig4708:3388..3849- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig4708.11810.1 ID=mRNA_H-elongata_contig4708.11810.1|Name=mRNA_H-elongata_contig4708.11810.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=462bp|location=Sequence derived from alignment at H-elongata_contig4708:3388..3849- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig4708:3388..3849- >mRNA_H-elongata_contig4708.11810.1 ID=mRNA_H-elongata_contig4708.11810.1|Name=mRNA_H-elongata_contig4708.11810.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=924bp|location=Sequence derived from alignment at H-elongata_contig4708:3388..3849- (Himanthalia elongata Himel1 dioecious)back to top |