mRNA_H-elongata_contig4708.11810.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4708.11810.1
Unique NamemRNA_H-elongata_contig4708.11810.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig4708.11810.1 vs. uniprot
Match: A0A6H5KPT0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPT0_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 7.160e-43
Identity = 71/153 (46.41%), Postives = 103/153 (67.32%), Query Frame = 1
Query:    4 VTLIVCAHVDDLVVTAKDKETFYVFYAQLKEEFPVNDMGNLSWYLGCAFECDKVEGVVKMTQTAFVDSLVDRFDINYKYEIQTPAFVELDLGPKRIDEKENDWPYNQAVGGLLWISGLRRPDIASAVRAVARHAHNSAARHWKAVRKIISYLK 462
            V +I+  +VDD++V   D E F  F A L ++FP  ++G   W+ GCA E D   G ++++QTA++DS+V+RFD+  K   + PA    DLGPKR DE+  +WP  +A+G ++W+S   RPD++ AVRAVARHAH  A RHW A++KI+ YLK
Sbjct:    6 VVMIIVIYVDDILVAGSD-EDFEEFLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDV--KSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLK 155          
BLAST of mRNA_H-elongata_contig4708.11810.1 vs. uniprot
Match: A0A6H5KBH1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH1_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 2.180e-41
Identity = 68/153 (44.44%), Postives = 102/153 (66.67%), Query Frame = 1
Query:    4 VTLIVCAHVDDLVVTAKDKETFYVFYAQLKEEFPVNDMGNLSWYLGCAFECDKVEGVVKMTQTAFVDSLVDRFDINYKYEIQTPAFVELDLGPKRIDEKENDWPYNQAVGGLLWISGLRRPDIASAVRAVARHAHNSAARHWKAVRKIISYLK 462
            V +I+  +VDD++V   D++   +  A L ++FP  ++G   W+ GCA E D   G ++++QTA++DS+V+RFD+     I  PA    DLGPKR DE+  +WP  +A+G ++W+S   RPD++ AVRAVARHAH  A RHW A++KI+ YLK
Sbjct:    6 VVMIIVIYVDDILVAGSDEDCEELL-ASLNKKFPTKNLGECQWFDGCAIERDADAGTLRISQTAYIDSMVERFDVQSTSRI--PATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLK 155          
BLAST of mRNA_H-elongata_contig4708.11810.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 6.740e-39
Identity = 68/153 (44.44%), Postives = 103/153 (67.32%), Query Frame = 1
Query:    4 VTLIVCAHVDDLVVTAKDKETFYVFYAQLKEEFPVNDMGNLSWYLGCAFECDKVEGVVKMTQTAFVDSLVDRFDINYKYEIQTPAFVELDLGPKRIDEKENDWPYNQAVGGLLWISGLRRPDIASAVRAVARHAHNSAARHWKAVRKIISYLK 462
            V +I+  +VDD++V   D++   +  A L ++FP  ++G   W+ GCA E D   G ++++QTA++DS+V+RFD+  K   + PA    DLGPKR DE+  +WP  +A+G ++W+S   RPD++ AVRAVARHAH  A RHW A++KI+ YLK
Sbjct:  213 VVMIIVIYVDDILVAGSDEDCEELL-ASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDV--KSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLK 362          
BLAST of mRNA_H-elongata_contig4708.11810.1 vs. uniprot
Match: A0A6H5JVD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD4_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 1.950e-38
Identity = 67/153 (43.79%), Postives = 102/153 (66.67%), Query Frame = 1
Query:    4 VTLIVCAHVDDLVVTAKDKETFYVFYAQLKEEFPVNDMGNLSWYLGCAFECDKVEGVVKMTQTAFVDSLVDRFDINYKYEIQTPAFVELDLGPKRIDEKENDWPYNQAVGGLLWISGLRRPDIASAVRAVARHAHNSAARHWKAVRKIISYLK 462
            V +I+  +VDD++V   D++   +  A L ++FP  ++G   W+ GCA E D   G ++++QTA++DS+V+RFD+     I  PA    DLGP+R DE+  +WP  +A+G ++W+S   RPD++ AVRAVARHAH  A RHW A++KI+ YLK
Sbjct:  149 VVMIIVIYVDDILVAGSDEDCEELL-ASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVQSTSRI--PATPGADLGPQREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLK 298          
BLAST of mRNA_H-elongata_contig4708.11810.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 5.170e-38
Identity = 69/153 (45.10%), Postives = 103/153 (67.32%), Query Frame = 1
Query:    4 VTLIVCAHVDDLVVTAKDKETFYVFYAQLKEEFPVNDMGNLSWYLGCAFECDKVEGVVKMTQTAFVDSLVDRFDINYKYEIQTPAFVELDLGPKRIDEKENDWPYNQAVGGLLWISGLRRPDIASAVRAVARHAHNSAARHWKAVRKIISYLK 462
            V +I+  +VDD++V   D++   +  A L ++FP  ++G   W+ GCA E D   G ++++QTA++DS+V+RFD+  K   + PA    DLGPKR D+K  +WP  +AVG ++W+S   RPD++ AVRAVARHAH  A RHW A++KI+ YLK
Sbjct:  517 VVMIIVIYVDDILVAGSDEDCEELL-ASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDV--KSTSRIPATPGADLGPKREDDKGGEWPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLK 666          
BLAST of mRNA_H-elongata_contig4708.11810.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 7.860e-38
Identity = 68/153 (44.44%), Postives = 103/153 (67.32%), Query Frame = 1
Query:    4 VTLIVCAHVDDLVVTAKDKETFYVFYAQLKEEFPVNDMGNLSWYLGCAFECDKVEGVVKMTQTAFVDSLVDRFDINYKYEIQTPAFVELDLGPKRIDEKENDWPYNQAVGGLLWISGLRRPDIASAVRAVARHAHNSAARHWKAVRKIISYLK 462
            V +I+  +VDD++V   D++   +  A L ++FP  ++G   W+ GCA E D   G ++++QTA++DS+V+RFD+  K   + PA    DLGPKR DE+  +WP  +A+G ++W+S   RPD++ AVRAVARHAH  A RHW A++KI+ YLK
Sbjct:  926 VVMIIVIYVDDILVAGSDEDCEELL-ASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDV--KSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLK 1075          
BLAST of mRNA_H-elongata_contig4708.11810.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 8.000e-38
Identity = 68/153 (44.44%), Postives = 103/153 (67.32%), Query Frame = 1
Query:    4 VTLIVCAHVDDLVVTAKDKETFYVFYAQLKEEFPVNDMGNLSWYLGCAFECDKVEGVVKMTQTAFVDSLVDRFDINYKYEIQTPAFVELDLGPKRIDEKENDWPYNQAVGGLLWISGLRRPDIASAVRAVARHAHNSAARHWKAVRKIISYLK 462
            V +I+  +VDD++V   D++   +  A L ++FP  ++G   W+ GCA E D   G ++++QTA++DS+V+RFD+  K   + PA    DLGPKR DE+  +WP  +A+G ++W+S   RPD++ AVRAVARHAH  A RHW A++KI+ YLK
Sbjct: 1305 VVMIIVIYVDDILVAGSDEDCEELL-ASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDV--KSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLK 1454          
BLAST of mRNA_H-elongata_contig4708.11810.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 8.020e-38
Identity = 68/153 (44.44%), Postives = 103/153 (67.32%), Query Frame = 1
Query:    4 VTLIVCAHVDDLVVTAKDKETFYVFYAQLKEEFPVNDMGNLSWYLGCAFECDKVEGVVKMTQTAFVDSLVDRFDINYKYEIQTPAFVELDLGPKRIDEKENDWPYNQAVGGLLWISGLRRPDIASAVRAVARHAHNSAARHWKAVRKIISYLK 462
            V +I+  +VDD++V   D++   +  A L ++FP  ++G   W+ GCA E D   G ++++QTA++DS+V+RFD+  K   + PA    DLGPKR DE+  +WP  +A+G ++W+S   RPD++ AVRAVARHAH  A RHW A++KI+ YLK
Sbjct: 1325 VVMIIVIYVDDILVAGSDEDCEELL-ASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDV--KSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLK 1474          
BLAST of mRNA_H-elongata_contig4708.11810.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 8.040e-38
Identity = 68/153 (44.44%), Postives = 103/153 (67.32%), Query Frame = 1
Query:    4 VTLIVCAHVDDLVVTAKDKETFYVFYAQLKEEFPVNDMGNLSWYLGCAFECDKVEGVVKMTQTAFVDSLVDRFDINYKYEIQTPAFVELDLGPKRIDEKENDWPYNQAVGGLLWISGLRRPDIASAVRAVARHAHNSAARHWKAVRKIISYLK 462
            V +I+  +VDD++V   D++   +  A L ++FP  ++G   W+ GCA E D   G ++++QTA++DS+V+RFD+  K   + PA    DLGPKR DE+  +WP  +A+G ++W+S   RPD++ AVRAVARHAH  A RHW A++KI+ YLK
Sbjct: 1468 VVMIIVIYVDDILVAGSDEDCEELL-ASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDV--KSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLK 1617          
BLAST of mRNA_H-elongata_contig4708.11810.1 vs. uniprot
Match: A0A6H5K274_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K274_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 2.920e-37
Identity = 68/153 (44.44%), Postives = 101/153 (66.01%), Query Frame = 1
Query:    4 VTLIVCAHVDDLVVTAKDKETFYVFYAQLKEEFPVNDMGNLSWYLGCAFECDKVEGVVKMTQTAFVDSLVDRFDINYKYEIQTPAFVELDLGPKRIDEKENDWPYNQAVGGLLWISGLRRPDIASAVRAVARHAHNSAARHWKAVRKIISYLK 462
            V +I+  +VDD++V   D++   +  A L ++FP  ++G   W+ GCA E D   G ++++QTA++DS+V RFD+     I  PA    DLGPKR DE+  +WP  +A+G ++W+S   RPD++ AVRAVARHAH  A RHW A++KI+ YLK
Sbjct:  437 VVMIIVIYVDDILVAGSDEDCEELL-ASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVARFDVQSTSRI--PATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLK 586          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4708.11810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPT0_9PHAE7.160e-4346.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KBH1_9PHAE2.180e-4144.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KTL3_9PHAE6.740e-3944.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JVD4_9PHAE1.950e-3843.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQN6_9PHAE5.170e-3845.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE7.860e-3844.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE8.000e-3844.44Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE8.020e-3844.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE8.040e-3844.44Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5K274_9PHAE2.920e-3744.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4708contigH-elongata_contig4708:3388..3849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score92.0
Seed ortholog evalue2.5e-16
Seed eggNOG ortholog65672.G4T9D2
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs227R3@155619,38DPC@33154,3H58M@355688,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size462
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930776.8034859-CDS-H-elongata_contig4708:3387..38491622930776.8034859-CDS-H-elongata_contig4708:3387..3849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4708 3388..3849 -
1691679565.445226-CDS-H-elongata_contig4708:3387..38491691679565.445226-CDS-H-elongata_contig4708:3387..3849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4708 3388..3849 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4708.11810.1prot_H-elongata_contig4708.11810.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4708 3388..3849 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4708.11810.1

>prot_H-elongata_contig4708.11810.1 ID=prot_H-elongata_contig4708.11810.1|Name=mRNA_H-elongata_contig4708.11810.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp
EVTLIVCAHVDDLVVTAKDKETFYVFYAQLKEEFPVNDMGNLSWYLGCAF
ECDKVEGVVKMTQTAFVDSLVDRFDINYKYEIQTPAFVELDLGPKRIDEK
ENDWPYNQAVGGLLWISGLRRPDIASAVRAVARHAHNSAARHWKAVRKII
SYLK
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mRNA from alignment at H-elongata_contig4708:3388..3849-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4708.11810.1 ID=mRNA_H-elongata_contig4708.11810.1|Name=mRNA_H-elongata_contig4708.11810.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=462bp|location=Sequence derived from alignment at H-elongata_contig4708:3388..3849- (Himanthalia elongata Himel1 dioecious)
GAGGTAACCCTCATTGTATGTGCTCATGTTGACGACCTCGTCGTGACCGC AAAGGACAAGGAGACGTTCTATGTATTTTATGCGCAGTTAAAGGAGGAAT TTCCTGTGAATGACATGGGCAATTTATCTTGGTATCTTGGATGTGCGTTC GAGTGTGACAAGGTGGAGGGCGTTGTGAAAATGACGCAGACAGCGTTCGT AGATTCGCTGGTTGACCGTTTTGATATAAACTACAAGTATGAGATCCAAA CTCCCGCGTTCGTAGAGTTGGACCTTGGGCCGAAAAGGATTGACGAGAAA GAGAACGATTGGCCTTACAATCAGGCGGTTGGTGGTCTGTTGTGGATCTC TGGGTTGAGACGACCGGATATAGCCAGTGCGGTGAGGGCAGTGGCCCGAC ATGCCCACAATTCGGCGGCGCGGCATTGGAAGGCAGTTCGTAAGATAATT TCCTACCTCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig4708:3388..3849-

>mRNA_H-elongata_contig4708.11810.1 ID=mRNA_H-elongata_contig4708.11810.1|Name=mRNA_H-elongata_contig4708.11810.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=924bp|location=Sequence derived from alignment at H-elongata_contig4708:3388..3849- (Himanthalia elongata Himel1 dioecious)
GAGGTAACCCTCATTGTATGTGCTCATGTTGACGACCTCGTCGTGACCGC
AAAGGACAAGGAGACGTTCTATGTATTTTATGCGCAGTTAAAGGAGGAAT
TTCCTGTGAATGACATGGGCAATTTATCTTGGTATCTTGGATGTGCGTTC
GAGTGTGACAAGGTGGAGGGCGTTGTGAAAATGACGCAGACAGCGTTCGT
AGATTCGCTGGTTGACCGTTTTGATATAAACTACAAGTATGAGATCCAAA
CTCCCGCGTTCGTAGAGTTGGACCTTGGGCCGAAAAGGATTGACGAGAAA
GAGAACGATTGGCCTTACAATCAGGCGGTTGGTGGTCTGTTGTGGATCTC
TGGGTTGAGACGACCGGATATAGCCAGTGCGGTGAGGGCAGTGGCCCGAC
ATGCCCACAATTCGGCGGCGCGGCATTGGAAGGCAGTTCGTAAGATAATT
TCCTACCTCAAGGAGGTAACCCTCATTGTATGTGCTCATGTTGACGACCT
CGTCGTGACCGCAAAGGACAAGGAGACGTTCTATGTATTTTATGCGCAGT
TAAAGGAGGAATTTCCTGTGAATGACATGGGCAATTTATCTTGGTATCTT
GGATGTGCGTTCGAGTGTGACAAGGTGGAGGGCGTTGTGAAAATGACGCA
GACAGCGTTCGTAGATTCGCTGGTTGACCGTTTTGATATAAACTACAAGT
ATGAGATCCAAACTCCCGCGTTCGTAGAGTTGGACCTTGGGCCGAAAAGG
ATTGACGAGAAAGAGAACGATTGGCCTTACAATCAGGCGGTTGGTGGTCT
GTTGTGGATCTCTGGGTTGAGACGACCGGATATAGCCAGTGCGGTGAGGG
CAGTGGCCCGACATGCCCACAATTCGGCGGCGCGGCATTGGAAGGCAGTT
CGTAAGATAATTTCCTACCTCAAG
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