mRNA_H-elongata_contig47061.11803.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47061.11803.1
Unique NamemRNA_H-elongata_contig47061.11803.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig47061.11803.1 vs. uniprot
Match: D8LB56_ECTSI (Glyoxalase domain containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB56_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 3.320e-19
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:   10 VLKIGSLKKSMTFFENVLGLKVLRHEEFETGCEATCNGPYGG 135
            VLKIGSLKKSMTFFENVLGLKVLRHEEF+ GCEATCNGPYGG
Sbjct:   15 VLKIGSLKKSMTFFENVLGLKVLRHEEFDEGCEATCNGPYGG 56
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BLAST of mRNA_H-elongata_contig47061.11803.1 vs. uniprot
Match: A0A7S2V5K7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5K7_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.230e-16
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:   10 VLKIGSLKKSMTFFENVLGLKVLRHEEFETGCEATCNGPYGG 135
            VLKIG+LK+SM FFE VLGL+ LRHEEFE+GCEATCNGPYGG
Sbjct:   74 VLKIGNLKESMKFFEGVLGLRTLRHEEFESGCEATCNGPYGG 115
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BLAST of mRNA_H-elongata_contig47061.11803.1 vs. uniprot
Match: A0A7S2V686_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V686_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.040e-16
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:   10 VLKIGSLKKSMTFFENVLGLKVLRHEEFETGCEATCNGPYGG 135
            VLKIG+LK+SM FFE VLGL+ LRHEEFE+GCEATCNGPYGG
Sbjct:   74 VLKIGNLKESMKFFEGVLGLRTLRHEEFESGCEATCNGPYGG 115
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BLAST of mRNA_H-elongata_contig47061.11803.1 vs. uniprot
Match: A0A7S3UZB1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UZB1_HETAK)

HSP 1 Score: 79.3 bits (194), Expect = 3.650e-16
Identity = 35/42 (83.33%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:   10 VLKIGSLKKSMTFFENVLGLKVLRHEEFETGCEATCNGPYGG 135
            VLKIG+LKKSM F+ENVLGL+VLRHEEF++GCEATCNGPY G
Sbjct:  258 VLKIGNLKKSMHFYENVLGLQVLRHEEFKSGCEATCNGPYAG 299
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BLAST of mRNA_H-elongata_contig47061.11803.1 vs. uniprot
Match: A0A7S2V7L4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7L4_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.970e-16
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:   10 VLKIGSLKKSMTFFENVLGLKVLRHEEFETGCEATCNGPYGG 135
            VLKIG+LKKSM F+E VLG+KVLRHEEF +GCEATCNGPY G
Sbjct:    9 VLKIGNLKKSMYFYEKVLGMKVLRHEEFSSGCEATCNGPYAG 50
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BLAST of mRNA_H-elongata_contig47061.11803.1 vs. uniprot
Match: A0A7S3UXG7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXG7_HETAK)

HSP 1 Score: 79.3 bits (194), Expect = 4.130e-16
Identity = 35/42 (83.33%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:   10 VLKIGSLKKSMTFFENVLGLKVLRHEEFETGCEATCNGPYGG 135
            VLKIG+LKKSM F+ENVLGL+VLRHEEF++GCEATCNGPY G
Sbjct:  429 VLKIGNLKKSMHFYENVLGLQVLRHEEFKSGCEATCNGPYAG 470
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BLAST of mRNA_H-elongata_contig47061.11803.1 vs. uniprot
Match: A0A7S3UYM7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UYM7_HETAK)

HSP 1 Score: 75.1 bits (183), Expect = 1.230e-14
Identity = 31/42 (73.81%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:   10 VLKIGSLKKSMTFFENVLGLKVLRHEEFETGCEATCNGPYGG 135
            V K+G+L++SM F+E VLGL+VLRHEEFE+GCEATCNGPY G
Sbjct:  154 VFKVGNLRRSMQFYEEVLGLRVLRHEEFESGCEATCNGPYAG 195
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BLAST of mRNA_H-elongata_contig47061.11803.1 vs. uniprot
Match: A0A7S2ELB3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ELB3_TRICV)

HSP 1 Score: 73.9 bits (180), Expect = 3.050e-14
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:   10 VLKIGSLKKSMTFFENVLGLKVLRHEEFETGCEATCNGPYGG 135
            V KIGSL+ S+ F+E V G +VLRHEEFETGCEATCNGPYGG
Sbjct:   85 VTKIGSLRSSLRFYELVFGFRVLRHEEFETGCEATCNGPYGG 126
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BLAST of mRNA_H-elongata_contig47061.11803.1 vs. uniprot
Match: A0A0M0J531_9EUKA (Glyoxalase domain-containing protein 4-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J531_9EUKA)

HSP 1 Score: 73.6 bits (179), Expect = 4.190e-14
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:   10 VLKIGSLKKSMTFFENVLGLKVLRHEEFETGCEATCNGPYGG 135
            V KIGSLK S+ F+E V G +VLRHEEFE+GCEATCNGPYGG
Sbjct:   21 VTKIGSLKNSLRFYELVFGFRVLRHEEFESGCEATCNGPYGG 62
[Close]
BLAST of mRNA_H-elongata_contig47061.11803.1 vs. uniprot
Match: A0A1D2NMH7_ORCCI (Glyoxalase domain-containing protein 4 n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2NMH7_ORCCI)

HSP 1 Score: 71.6 bits (174), Expect = 1.200e-13
Identity = 30/42 (71.43%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:   10 VLKIGSLKKSMTFFENVLGLKVLRHEEFETGCEATCNGPYGG 135
            VL+IG  K++M+FF+NVLG+KVLRHEEFE GC+A CNGPY G
Sbjct:   10 VLRIGKRKEAMSFFKNVLGMKVLRHEEFEKGCDAACNGPYDG 51
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47061.11803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB56_ECTSI3.320e-1995.24Glyoxalase domain containing protein n=2 Tax=Ectoc... [more]
A0A7S2V5K7_9STRA1.230e-1683.33Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2V686_9STRA2.040e-1683.33Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3UZB1_HETAK3.650e-1683.33Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2V7L4_9STRA3.970e-1680.95Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3UXG7_HETAK4.130e-1683.33Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3UYM7_HETAK1.230e-1473.81Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2ELB3_TRICV3.050e-1476.19Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A0M0J531_9EUKA4.190e-1476.19Glyoxalase domain-containing protein 4-like protei... [more]
A0A1D2NMH7_ORCCI1.200e-1371.43Glyoxalase domain-containing protein 4 n=1 Tax=Orc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47061contigH-elongata_contig47061:90..227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue1.1e-15
Seed eggNOG ortholog2880.D8LB56
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
EggNOG free text desc.methylglyoxal metabolic process
EggNOG OGsCOG0346@1,COG0526@1,KOG0907@2759,KOG2943@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930776.1534488-CDS-H-elongata_contig47061:89..2271622930776.1534488-CDS-H-elongata_contig47061:89..227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47061 90..227 -
1691679565.1874015-CDS-H-elongata_contig47061:89..2271691679565.1874015-CDS-H-elongata_contig47061:89..227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47061 90..227 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47061.11803.1prot_H-elongata_contig47061.11803.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47061 90..227 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47061.11803.1

>prot_H-elongata_contig47061.11803.1 ID=prot_H-elongata_contig47061.11803.1|Name=mRNA_H-elongata_contig47061.11803.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
LPQVLKIGSLKKSMTFFENVLGLKVLRHEEFETGCEATCNGPYGG*
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mRNA from alignment at H-elongata_contig47061:90..227-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47061.11803.1 ID=mRNA_H-elongata_contig47061.11803.1|Name=mRNA_H-elongata_contig47061.11803.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig47061:90..227- (Himanthalia elongata Himel1 dioecious)
CTCCCTCAGGTGCTTAAGATTGGAAGCTTGAAGAAATCCATGACCTTTTT
CGAGAACGTGCTCGGGCTGAAGGTCCTTCGACACGAGGAGTTCGAGACGG
GTTGCGAGGCGACTTGCAACGGACCGTATGGAGGTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig47061:90..227-

>mRNA_H-elongata_contig47061.11803.1 ID=mRNA_H-elongata_contig47061.11803.1|Name=mRNA_H-elongata_contig47061.11803.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig47061:90..227- (Himanthalia elongata Himel1 dioecious)
CTCCCTCAGGTGCTTAAGATTGGAAGCTTGAAGAAATCCATGACCTTTTT
CGAGAACGTGCTCGGGCTGAAGGTCCTTCGACACGAGGAGTTCGAGACGG
GTTGCGAGGCGACTTGCAACGGACCGTATGGAGGTTAGCTCCCTCAGGTG
CTTAAGATTGGAAGCTTGAAGAAATCCATGACCTTTTTCGAGAACGTGCT
CGGGCTGAAGGTCCTTCGACACGAGGAGTTCGAGACGGGTTGCGAGGCGA
CTTGCAACGGACCGTATGGAGGTTAG
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