mRNA_H-elongata_contig47042.11801.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig47042.11801.1
Unique NamemRNA_H-elongata_contig47042.11801.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47042.11801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47042contigH-elongata_contig47042:626..4240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons8
Model size495
Cds size495
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47042.11801.1prot_H-elongata_contig47042.11801.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig47042 626..4240 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930775.882476-CDS-H-elongata_contig47042:625..6911622930775.882476-CDS-H-elongata_contig47042:625..691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47042 626..691 -
1691679565.0570195-CDS-H-elongata_contig47042:625..6911691679565.0570195-CDS-H-elongata_contig47042:625..691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47042 626..691 -
1622930775.898883-CDS-H-elongata_contig47042:1643..17051622930775.898883-CDS-H-elongata_contig47042:1643..1705Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47042 1644..1705 -
1691679565.0646715-CDS-H-elongata_contig47042:1643..17051691679565.0646715-CDS-H-elongata_contig47042:1643..1705Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47042 1644..1705 -
1622930775.914133-CDS-H-elongata_contig47042:2063..21141622930775.914133-CDS-H-elongata_contig47042:2063..2114Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47042 2064..2114 -
1691679565.072347-CDS-H-elongata_contig47042:2063..21141691679565.072347-CDS-H-elongata_contig47042:2063..2114Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47042 2064..2114 -
1622930775.93931-CDS-H-elongata_contig47042:2491..25421622930775.93931-CDS-H-elongata_contig47042:2491..2542Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47042 2492..2542 -
1691679565.0824604-CDS-H-elongata_contig47042:2491..25421691679565.0824604-CDS-H-elongata_contig47042:2491..2542Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47042 2492..2542 -
1622930775.961179-CDS-H-elongata_contig47042:2886..29611622930775.961179-CDS-H-elongata_contig47042:2886..2961Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47042 2887..2961 -
1691679565.0913699-CDS-H-elongata_contig47042:2886..29611691679565.0913699-CDS-H-elongata_contig47042:2886..2961Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47042 2887..2961 -
1622930775.9735272-CDS-H-elongata_contig47042:3334..33851622930775.9735272-CDS-H-elongata_contig47042:3334..3385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47042 3335..3385 -
1691679565.1006396-CDS-H-elongata_contig47042:3334..33851691679565.1006396-CDS-H-elongata_contig47042:3334..3385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47042 3335..3385 -
1622930775.9899673-CDS-H-elongata_contig47042:3752..38301622930775.9899673-CDS-H-elongata_contig47042:3752..3830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47042 3753..3830 -
1691679565.1102407-CDS-H-elongata_contig47042:3752..38301691679565.1102407-CDS-H-elongata_contig47042:3752..3830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47042 3753..3830 -
1622930776.0061557-CDS-H-elongata_contig47042:4179..42401622930776.0061557-CDS-H-elongata_contig47042:4179..4240Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47042 4180..4240 -
1691679565.1227-CDS-H-elongata_contig47042:4179..42401691679565.1227-CDS-H-elongata_contig47042:4179..4240Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig47042 4180..4240 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig47042.11801.1

>prot_H-elongata_contig47042.11801.1 ID=prot_H-elongata_contig47042.11801.1|Name=mRNA_H-elongata_contig47042.11801.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=165bp
TPAGPTTPAPSPVPTPAPTSDMYTPFPLAEPTTPAPSPMPTPAPTSEPTT
PSPSLMPTLAPTPEPTTPAPSPVPTPAPTPGEDLGPRPKPTTPAPSLMPT
LAPTPEPTTPAPSPAPTPAPTPEPTTPALSPVPTPAPTPREYFPTTPAPS
PVPTPAPTPGEYFK*
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mRNA from alignment at H-elongata_contig47042:626..4240-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig47042.11801.1 ID=mRNA_H-elongata_contig47042.11801.1|Name=mRNA_H-elongata_contig47042.11801.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3615bp|location=Sequence derived from alignment at H-elongata_contig47042:626..4240- (Himanthalia elongata Himel1 dioecious)
ACACCCGCAGGGCCTACAACACCAGCGCCATCACCCGTACCTACACCAGC
CCCGACATCTGGTGAGTATTTCGAATGAGGTCGCTGTCCACAATCTGCTA
TAAAGAGGCAAGATAGTCGACTGTTATATAAGCATTTGAAGTGTCTCTGG
GCAGGATATAAAAAATTATGGCGGGATGCCACTCGCACTTGGCAATCATC
TAGTGAAAATATTTCCCACTTTTCTAAGCTACCTTGAGAGGCTTATATAA
GGTCCGGGGGCCGCCATCCAAGCGAACTCTCGAAAACGTCGAAGTAAACA
CATGCTTCCAGGAATCTAACAAAATACATCACACATACGTAGAAGCACTC
CGACGATATCATGCCGAGTGGAATTCGATCTTGACAGGCTTGTCAAGCCC
CCCCACTAAGATATGTACACCCCATTTCCACTCGCAGAGCCTACAACACC
GGCTCCATCACCCATGCCTACCCCGGCCCCGACATCTGGTGAGTATTTTG
TCTGGGGTTCCGTTCGCAATCTCCTTCAACGTGGTAGTATAACCGAATGT
TATATCAGCGTTTAAAGCGGCTCTGAGCAGGATATAAAAATGTATGGCGA
GATGGCAATCGCACTTCTTGATGATCCACTGGTTATCATTCTTCCCACTG
TGTTAGAAACCGTATGAAGGCTTGTAGAAGGTCCGTGGGCTCGTCATTCA
AGTGGGCGCTTAAAACATCTAGACGCAGACATACTTCTAGGAATCTAATA
TTACGTTGTATGTTTGTAGACGCCCTCTGATTATATCATGTCAAGCAGAA
ATCGGTCGTTATATATCTGTCACGGCTCGGACGCTAATATACCATACATC
CGCAGAGCCTACGACACCGTCACCATCACTCATGCCTACCCTAGCCCCAA
CACCTGGTCAGTATTTTGAATGAGGTCCCCGTTCACAATCTCCTACAAAG
TGGCAAGATATTCGACTGTTATATAAGCATTTGAAGTGTCTCTGGGCAAG
ATATAGAGAGTTATAGTAGGATGTCACTCGCACTTGGCAATCCTCTGGTG
AAAATATCTTCCACTGAGCTCAACTCCCTTGTTAGGCTTAGATAAAGTCC
GGGGGCCGCTATCCAAGCAAACTCTCGGAAACGTCGTAGTACAAACGTTC
TTCCAGGAGCCTAAATACGTCGCACATACGTAGAAGCACTCCGACGATAT
CATGCCGAGTGGAGTGCAATCTTTATAGGCTTGTCATGCCCCCCTCACTA
AGATATATACATCCCATTTACATCCGCAGAGCCTACAACACCGGCCCCAT
CACCCGTGCCTACCCCGGCCCCGACACCTGGTGAGGATTTAGGTCCAAGG
CCCAGTTTATAGTATCCTGCAATATGGTAGGAGATGGGACTATTTTGGAA
GTATTTGGAGGGGTTCTGGGCGGGTATGGCCTAATGTCACTCGCACTTGA
TGCTCCACGAATTATCATGCATCCCACTGTGCTCAACAAATATAGATAGA
TTCGTATAAAATCCGTTCGCCCGTCATTCAAGTGGGCGTTTAAAACATCT
GGACGCAAACATACTTTGAGGAATCTAATATTACGTTGTATGTTGGTAGG
CGCCCTCTGATTATAGCATATCAAGCAGAAATCGGTCGTTATATATTTGT
CACGACTCGAACGCTAATATATATATTATATACCCCATACATCCGCAGAG
CCTACGACACCGGCACCATCACTCATGCCTACCCTAGCCCCGACACCTGG
TCAGTATTTTGAATGAAGTCCCCGTTCAAAATCTCGTATAAGGTGGCATG
ATAGCCGACTGTTATAAAAGCATTTGAAGTGGCTCTGGGAAGAATATAGA
AAGGTATAGCGGGATGCCACCCGCACCTGACGATCCTATGATGAAAATAT
CTTCCACTGTGCTCAACTCCCTTTGTAGGCTTAGATAAAGTCCACCGGCC
GATATCCAATCAAACTCTCGGAAACGTCGGAGTACAAACGTGCTTCCAGG
AGCCTAACGAATACGTCGCACATATGTAGAAGCACTCCGATGATATCATG
CCGAGCGGAGTTCAACCTTTATAGGCTTGTCATTCCCCCCCCCACTAAGA
TGTATACACCCCATTTACACCCGCAGAGCCTACAACACCGGCGCCGTCAC
CTGCGCCTACCCCGGCCCCGACACCTGGTGAGTATTCGCGACCACGACCC
TGTTTATAGTACCCTCCAATGTTATAAGAGAGACAACAAAGCATTTACAG
GGATTCTCGGCGGGTATGGCCGGTTGCCACTCGCACTTGATGATCCGCGG
ATGATCATACCTCTCACTGTGTTAAAGCATACAGCGACACGCTTATATAA
CGTCCGTTGGCCGGCAATTCAAGTGAACATCCGGGCACGTCTGGGTGCAA
ATATGCTTCCAGCATTATGACGATTACGTTGCATGTGGGTAGAAGTCTAC
CGATGATATCATGCCGCCTGAAACTCGGCTGTTAGAGGCTGCCATTGTCC
ACTCTCTAATATATGTGCACTCCATACATCCGCAGAGCCTACAACACCGG
CCCTATCACCCGTGCCTACTCCGGCCCCAACCCCTCGTGAGTATTTCGTC
TGGGGGTCCCATTCACAATTTCCTGCAGCGTGGTAAGATAATCGACTGTT
ATATCAGCGCTTGAAATATCTCTGGGCAGGATATAAAAAAGGTGTGACGA
GTTGTCACTCGCACTTGATGATCCACGGATGAGTATGCCTCCCACTATAC
GAGAAACTGTTTCTAGACTTGTAGAATATCCGTGGGTCCGTTGTTCGAGT
GGGCGTTTAAAACGTCAAGACGCAGACATATTTCTAGTATTCTGATATTA
GACGGCGGAACAAGGGGCGGAACATTTCATGAAGAATTGGATCGCTGCAA
AGAAAGTTAGNNNNNNNNNNACTAGCGTGTCCGAACGTGATAGGGAGGAC
CAAGGAGAGGATAGCCCAATACAAGCGTGCTCGTGCTGGTTTGCTCGCCA
TAGTTAATTAGCCACGAGTGGCGCGAACGTATCCCCCGGGCGTTGTTTTT
TGCTTGTTAATGTCATATTGCCTTTCGCTGGCGTTATGCTTTTTCTTTGT
CTTGTTTTTCTTTTTGTTTTCGTGTTGCTATTTTTTGCTTCCATTGGACC
CGTCGCTCTTCGCTCAATCGTTCTACGATAGGACCGCATCCCGATAGCCA
CATGGAGTTCGTTAACAACTGTGTGTGTTCTCTTTTTTTGTGTTTCTTTT
TCTTTGGAGATGTCGCTTTTTCCGAATATTTGTATTATGTGCCATTGCCG
TTTTCTTTCCGCATTGGAGAATATGTTGAACTTTTTTCTCGTTCCGGATG
GTGTTTTTCTACCTTGTGGCCACGGGCTGGATTTTGACATCAGGTTATGT
AAGAATTCAATCAAATAAAAAATCAAATAAAAACAATCTATCAATGTTGG
TAGACGCCCTCTGATTATATCATGTCAAGCAGAAATCGGTCGTTATAGAC
TTGTCACGGCTCGGGCACTAAGATATATACACCCCATACATCCGCAGAGC
CTACAACACCGGCGCCATCACCCGTGCCTACCCCGGCCCCGACACCTGGT
GAGTATTTCAAATGA
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Coding sequence (CDS) from alignment at H-elongata_contig47042:626..4240-

>mRNA_H-elongata_contig47042.11801.1 ID=mRNA_H-elongata_contig47042.11801.1|Name=mRNA_H-elongata_contig47042.11801.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=990bp|location=Sequence derived from alignment at H-elongata_contig47042:626..4240- (Himanthalia elongata Himel1 dioecious)
ACACCCGCAGGGCCTACAACACCAGCGCCATCACCCGTACCTACACCAGC
CCCGACATCTGACACCCGCAGGGCCTACAACACCAGCGCCATCACCCGTA
CCTACACCAGCCCCGACATCTGATATGTACACCCCATTTCCACTCGCAGA
GCCTACAACACCGGCTCCATCACCCATGCCTACCCCGGCCCCGACATCTG
ATATGTACACCCCATTTCCACTCGCAGAGCCTACAACACCGGCTCCATCA
CCCATGCCTACCCCGGCCCCGACATCTGAGCCTACGACACCGTCACCATC
ACTCATGCCTACCCTAGCCCCAACACCTGAGCCTACGACACCGTCACCAT
CACTCATGCCTACCCTAGCCCCAACACCTGAGCCTACAACACCGGCCCCA
TCACCCGTGCCTACCCCGGCCCCGACACCTGGTGAGGATTTAGGTCCAAG
GCCCAAGCCTACAACACCGGCCCCATCACCCGTGCCTACCCCGGCCCCGA
CACCTGGTGAGGATTTAGGTCCAAGGCCCAAGCCTACGACACCGGCACCA
TCACTCATGCCTACCCTAGCCCCGACACCTGAGCCTACGACACCGGCACC
ATCACTCATGCCTACCCTAGCCCCGACACCTGAGCCTACAACACCGGCGC
CGTCACCTGCGCCTACCCCGGCCCCGACACCTGAGCCTACAACACCGGCG
CCGTCACCTGCGCCTACCCCGGCCCCGACACCTGAGCCTACAACACCGGC
CCTATCACCCGTGCCTACTCCGGCCCCAACCCCTCGTGAGTATTTCAGCC
TACAACACCGGCCCTATCACCCGTGCCTACTCCGGCCCCAACCCCTCGTG
AGTATTTCCCTACAACACCGGCGCCATCACCCGTGCCTACCCCGGCCCCG
ACACCTGGTGAGTATTTCAAATGACCTACAACACCGGCGCCATCACCCGT
GCCTACCCCGGCCCCGACACCTGGTGAGTATTTCAAATGA
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