mRNA_H-elongata_contig46790.11781.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig46790.11781.1
Unique NamemRNA_H-elongata_contig46790.11781.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig46790.11781.1 vs. uniprot
Match: D8LRI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRI4_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.280e-24
Identity = 46/66 (69.70%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 KIRGLGLGQIAMAPGGWIRADGSGHAVAFVVMRKAEDKFSVSIINPCGEGAEYHAKEADPSRGKVR 198
            KIRGLG+G + MAP GW+RADG+GH+V FVVMR+  + FSVSI+NP GEG EYHA+EADP+RGK+R
Sbjct:  488 KIRGLGVGDLGMAPCGWVRADGTGHSVIFVVMRRDAEVFSVSIVNPYGEGTEYHAQEADPTRGKMR 553
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BLAST of mRNA_H-elongata_contig46790.11781.1 vs. uniprot
Match: A0A6H5KSR5_9PHAE (SH3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR5_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.500e-24
Identity = 46/65 (70.77%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:    1 KIRGLGLGQIAMAPGGWIRADGSGHAVAFVVMRKAEDKFSVSIINPCGEGAEYHAKEADPSRGKV 195
            KIRGLG+G + MAP GW+RADG+GH+V FVVMR+  + FSVSI+NP GEG EYHA+EADP+RGKV
Sbjct:  334 KIRGLGVGDLGMAPCGWVRADGTGHSVIFVVMRRDAEVFSVSIVNPHGEGTEYHAQEADPTRGKV 398
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BLAST of mRNA_H-elongata_contig46790.11781.1 vs. uniprot
Match: A0A835Z7Z7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Z7_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.430e-12
Identity = 31/82 (37.80%), Postives = 49/82 (59.76%), Query Frame = 1 
Query:    1 KIRGLGLGQIAMAPGGWIRADGSGHAVAFVVMRK----------------AEDKFSVSIINPCGEGAEYHAKEADPSRGKVR 198
            K++ +  G+ AMAPGGW+R DG+GH + F+V ++                + D +S++++NP GEGA YHA   DP+ G V+
Sbjct: 1060 KVKQMRAGEFAMAPGGWMREDGTGHLLVFLVRKEVPGASTLSADSMRTDVSADSYSLTVVNPSGEGAGYHAVRPDPANGNVQ 1141
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46790.11781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LRI4_ECTSI1.280e-2469.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KSR5_9PHAE2.500e-2470.77SH3 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835Z7Z7_9STRA1.430e-1237.80Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46790contigH-elongata_contig46790:3284..3487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.8
Seed ortholog evalue1.7e-20
Seed eggNOG ortholog2880.D8LRI4
Preferred nameENAH
KEGG koko:K03099,ko:K05746
KEGG Pathwayko01521,ko01522,ko04010,ko04012,ko04013,ko04014,ko04062,ko04068,ko04072,ko04150,ko04151,ko04320,ko04360,ko04510,ko04540,ko04630,ko04650,ko04660,ko04662,ko04664,ko04714,ko04722,ko04810,ko04910,ko04912,ko04915,ko04917,ko04926,ko05034,ko05160,ko05165,ko05200,ko05205,ko05206,ko05210,ko05211,ko05213,ko05214,ko05215,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05231,map01521,map01522,map04010,map04012,map04013,map04014,map04062,map04068,map04072,map04150,map04151,map04320,map04360,map04510,map04540,map04630,map04650,map04660,map04662,map04664,map04714,map04722,map04810,map04910,map04912,map04915,map04917,map04926,map05034,map05160,map05165,map05200,map05205,map05206,map05210,map05211,map05213,map05214,map05215,map05220,map05221,map05223,map05224,map05225,map05226,map05231
EggNOG free text desc.positive regulation of caveolin-mediated endocytosis
EggNOG OGsKOG1029@1,KOG1029@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930773.8377085-CDS-H-elongata_contig46790:3283..34871622930773.8377085-CDS-H-elongata_contig46790:3283..3487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46790 3284..3487 +
1691679564.1583982-CDS-H-elongata_contig46790:3283..34871691679564.1583982-CDS-H-elongata_contig46790:3283..3487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46790 3284..3487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46790.11781.1prot_H-elongata_contig46790.11781.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig46790 3284..3487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig46790.11781.1

>prot_H-elongata_contig46790.11781.1 ID=prot_H-elongata_contig46790.11781.1|Name=mRNA_H-elongata_contig46790.11781.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
KIRGLGLGQIAMAPGGWIRADGSGHAVAFVVMRKAEDKFSVSIINPCGEG
AEYHAKEADPSRGKVRV*
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mRNA from alignment at H-elongata_contig46790:3284..3487+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig46790.11781.1 ID=mRNA_H-elongata_contig46790.11781.1|Name=mRNA_H-elongata_contig46790.11781.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at H-elongata_contig46790:3284..3487+ (Himanthalia elongata Himel1 dioecious)
AAAATCCGAGGCCTGGGCCTGGGTCAGATCGCTATGGCGCCGGGGGGATG
GATACGGGCGGATGGCAGCGGTCACGCCGTGGCGTTCGTAGTGATGAGGA
AGGCTGAGGACAAATTCTCTGTGTCGATTATCAATCCGTGTGGAGAGGGA
GCGGAGTACCACGCAAAAGAGGCCGATCCTTCTCGGGGCAAGGTGAGGGT
ATGA
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Coding sequence (CDS) from alignment at H-elongata_contig46790:3284..3487+

>mRNA_H-elongata_contig46790.11781.1 ID=mRNA_H-elongata_contig46790.11781.1|Name=mRNA_H-elongata_contig46790.11781.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig46790:3284..3487+ (Himanthalia elongata Himel1 dioecious)
AAAATCCGAGGCCTGGGCCTGGGTCAGATCGCTATGGCGCCGGGGGGATG
GATACGGGCGGATGGCAGCGGTCACGCCGTGGCGTTCGTAGTGATGAGGA
AGGCTGAGGACAAATTCTCTGTGTCGATTATCAATCCGTGTGGAGAGGGA
GCGGAGTACCACGCAAAAGAGGCCGATCCTTCTCGGGGCAAGGTGAGGGT
ATGAAAAATCCGAGGCCTGGGCCTGGGTCAGATCGCTATGGCGCCGGGGG
GATGGATACGGGCGGATGGCAGCGGTCACGCCGTGGCGTTCGTAGTGATG
AGGAAGGCTGAGGACAAATTCTCTGTGTCGATTATCAATCCGTGTGGAGA
GGGAGCGGAGTACCACGCAAAAGAGGCCGATCCTTCTCGGGGCAAGGTGA
GGGTATGA
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