mRNA_H-elongata_contig46727.11775.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig46727.11775.1 vs. uniprot
Match: D7G6L2_ECTSI (CTP synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L2_ECTSI) HSP 1 Score: 171 bits (434), Expect = 6.910e-49 Identity = 87/110 (79.09%), Postives = 89/110 (80.91%), Query Frame = 1
Query: 1 NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTGKARYSDLRNERKGNYLGKTVQIVPHFTDVIQVRLFGLEQWIERVASIPVDGSKIRHDVCLIE 330
NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTGK S + ERKG YLGKTVQ+VPH TD IQ WIERVA IPVDGS R DVCLIE
Sbjct: 71 NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTGKVYQSVISKERKGEYLGKTVQVVPHITDEIQA-------WIERVAEIPVDGSNQRPDVCLIE 173
BLAST of mRNA_H-elongata_contig46727.11775.1 vs. uniprot
Match: A0A392NTP0_9FABA (CTP synthase-like (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392NTP0_9FABA) HSP 1 Score: 156 bits (395), Expect = 3.110e-47 Identity = 77/110 (70.00%), Postives = 87/110 (79.09%), Query Frame = 1
Query: 1 NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTGKARYSDLRNERKGNYLGKTVQIVPHFTDVIQVRLFGLEQWIERVASIPVDGSKIRHDVCLIE 330
NTDAGTMSPFEHGEVFVLDDGGE DLDLGNYERFL ++L+RD+NITTGK S + ER+G+YLGKTVQ+VPH TD IQ WIERVA IPVDG + DVC+IE
Sbjct: 4 NTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDIKLTRDNNITTGKIYQSVIEKERRGDYLGKTVQVVPHITDAIQ-------DWIERVAKIPVDGKEGPADVCVIE 106
BLAST of mRNA_H-elongata_contig46727.11775.1 vs. uniprot
Match: A0A3N7GG79_POPTR (CTP_synth_N domain-containing protein n=3 Tax=Mesangiospermae TaxID=1437183 RepID=A0A3N7GG79_POPTR) HSP 1 Score: 157 bits (397), Expect = 1.780e-46 Identity = 78/110 (70.91%), Postives = 88/110 (80.00%), Query Frame = 1
Query: 1 NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTGKARYSDLRNERKGNYLGKTVQIVPHFTDVIQVRLFGLEQWIERVASIPVDGSKIRHDVCLIE 330
NTDAGTMSPFEHGEVFVLDDGGE DLDLGNYERFL ++L+RD+NITTGK S L ER+G+YLGKTVQ+VPH TD IQ +WIERVA IPVDG + DVC+IE
Sbjct: 44 NTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDIKLTRDNNITTGKIYQSVLEKERRGDYLGKTVQVVPHITDAIQ-------EWIERVAFIPVDGKEGPADVCVIE 146
BLAST of mRNA_H-elongata_contig46727.11775.1 vs. uniprot
Match: B7FGK3_MEDTR (CTP_synth_N domain-containing protein (Fragment) n=1 Tax=Medicago truncatula TaxID=3880 RepID=B7FGK3_MEDTR) HSP 1 Score: 156 bits (395), Expect = 4.510e-46 Identity = 76/110 (69.09%), Postives = 88/110 (80.00%), Query Frame = 1
Query: 1 NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTGKARYSDLRNERKGNYLGKTVQIVPHFTDVIQVRLFGLEQWIERVASIPVDGSKIRHDVCLIE 330
NTDAGTMSPFEHGEVFVLDDGGE DLDLGNYERFL ++L+RD+NITTGK S + ER+G+YLGKTVQ+VPH TD IQ +WIERVA +PVDG + DVC+IE
Sbjct: 44 NTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDIKLTRDNNITTGKIYQSVVEKERRGDYLGKTVQVVPHITDAIQ-------EWIERVAQVPVDGKEGPADVCVIE 146
BLAST of mRNA_H-elongata_contig46727.11775.1 vs. uniprot
Match: A0A835Z7S1_9STRA (CTP synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7S1_9STRA) HSP 1 Score: 154 bits (390), Expect = 1.990e-45 Identity = 78/110 (70.91%), Postives = 84/110 (76.36%), Query Frame = 1
Query: 1 NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTGKARYSDLRNERKGNYLGKTVQIVPHFTDVIQVRLFGLEQWIERVASIPVDGSKIRHDVCLIE 330
NTDAGTMSPFEHGEVFVLDDGGE DLDLGNYERFL VRLSRDHNITTG + ER+G++LGKTVQ+VPH TD IQ WIERVA PVDGS DVCL+E
Sbjct: 44 NTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLSVRLSRDHNITTGTVYQEVILKERRGDHLGKTVQVVPHITDEIQ-------DWIERVAVTPVDGSGCCPDVCLVE 146
BLAST of mRNA_H-elongata_contig46727.11775.1 vs. uniprot
Match: A0A6A5AYC2_9STRA (CTP synthase (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AYC2_9STRA) HSP 1 Score: 158 bits (400), Expect = 5.800e-45 Identity = 77/110 (70.00%), Postives = 85/110 (77.27%), Query Frame = 1
Query: 1 NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTGKARYSDLRNERKGNYLGKTVQIVPHFTDVIQVRLFGLEQWIERVASIPVDGSKIRHDVCLIE 330
N DAGTMSPFEHGEVFVLDDGGE DLDLGNYERFLG+ L++DHNITTGK +R ER+G+YLGKTVQ+VPH TD IQ WIERVA IPVDG D+CLIE
Sbjct: 44 NCDAGTMSPFEHGEVFVLDDGGEGDLDLGNYERFLGITLTKDHNITTGKVYQQVIRRERRGDYLGKTVQVVPHVTDSIQA-------WIERVAQIPVDGDSTPADICLIE 146
BLAST of mRNA_H-elongata_contig46727.11775.1 vs. uniprot
Match: A0A833U1A4_JUGRE (CTP_synth_N domain-containing protein n=1 Tax=Juglans regia TaxID=51240 RepID=A0A833U1A4_JUGRE) HSP 1 Score: 152 bits (383), Expect = 9.980e-45 Identity = 77/110 (70.00%), Postives = 85/110 (77.27%), Query Frame = 1
Query: 1 NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTGKARYSDLRNERKGNYLGKTVQIVPHFTDVIQVRLFGLEQWIERVASIPVDGSKIRHDVCLIE 330
NTDAGTMSPFEHGEVFVLDDGGE DLDLGNYERFL V L+RD+NITTGK S L ER+G+YLGKTVQ+VPH TD I+ WIE VA IPVDG + DVC+IE
Sbjct: 44 NTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVTLTRDNNITTGKIYQSVLEKERRGDYLGKTVQVVPHITDAIK-------NWIEAVAVIPVDGQEGPADVCVIE 146
BLAST of mRNA_H-elongata_contig46727.11775.1 vs. uniprot
Match: A0A453F597_AEGTS (CTP_synth_N domain-containing protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453F597_AEGTS) HSP 1 Score: 152 bits (384), Expect = 1.130e-44 Identity = 75/110 (68.18%), Postives = 86/110 (78.18%), Query Frame = 1
Query: 1 NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTGKARYSDLRNERKGNYLGKTVQIVPHFTDVIQVRLFGLEQWIERVASIPVDGSKIRHDVCLIE 330
NTDAGTMSPFEHGEV+VLDDGGE DLDLGNYERFL ++L+RDHNITTGK + + ER+G+YLGKTVQ+VPH TD IQ WIERVA PVDG + DVC+IE
Sbjct: 67 NTDAGTMSPFEHGEVYVLDDGGEVDLDLGNYERFLDIKLTRDHNITTGKVYQAVIDKERRGDYLGKTVQVVPHITDEIQ-------DWIERVAIKPVDGKEGPPDVCVIE 169
BLAST of mRNA_H-elongata_contig46727.11775.1 vs. uniprot
Match: A0A452ZZ03_AEGTS (CTP_synth_N domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452ZZ03_AEGTS) HSP 1 Score: 152 bits (385), Expect = 1.310e-44 Identity = 76/110 (69.09%), Postives = 86/110 (78.18%), Query Frame = 1
Query: 1 NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTGKARYSDLRNERKGNYLGKTVQIVPHFTDVIQVRLFGLEQWIERVASIPVDGSKIRHDVCLIE 330
NTDAGTMSPFEHGEVFVLDDGGE DLDLGNYERFL ++L+RD+NITTGK + + ERKG+YLGKTVQ+VPH TD IQ WIERVA PVDG+ DVC+IE
Sbjct: 78 NTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDIKLTRDNNITTGKIYQAVINKERKGDYLGKTVQVVPHITDEIQ-------DWIERVAMNPVDGTDKPADVCVIE 180
BLAST of mRNA_H-elongata_contig46727.11775.1 vs. uniprot
Match: A0A453A273_AEGTS (CTP_synth_N domain-containing protein n=3 Tax=Triticinae TaxID=1648030 RepID=A0A453A273_AEGTS) HSP 1 Score: 153 bits (386), Expect = 1.690e-44 Identity = 75/110 (68.18%), Postives = 86/110 (78.18%), Query Frame = 1
Query: 1 NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTGKARYSDLRNERKGNYLGKTVQIVPHFTDVIQVRLFGLEQWIERVASIPVDGSKIRHDVCLIE 330
NTDAGTMSPFEHGEVFVLDDGGE DLDLGNYERFL ++L+RD+NITTGK S + ER+G YLGKTVQ+VPH T+ IQ WIERVA +PVDG + DVC+IE
Sbjct: 44 NTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDIKLTRDNNITTGKIYQSVINKEREGEYLGKTVQVVPHITNAIQ-------DWIERVAMVPVDGQEGPADVCVIE 146 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46727.11775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig46727.11775.1 >prot_H-elongata_contig46727.11775.1 ID=prot_H-elongata_contig46727.11775.1|Name=mRNA_H-elongata_contig46727.11775.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp MSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTGKARYSDLRback to top mRNA from alignment at H-elongata_contig46727:2..985- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig46727.11775.1 ID=mRNA_H-elongata_contig46727.11775.1|Name=mRNA_H-elongata_contig46727.11775.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=984bp|location=Sequence derived from alignment at H-elongata_contig46727:2..985- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig46727:2..985- >mRNA_H-elongata_contig46727.11775.1 ID=mRNA_H-elongata_contig46727.11775.1|Name=mRNA_H-elongata_contig46727.11775.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig46727:2..985- (Himanthalia elongata Himel1 dioecious)back to top |