mRNA_H-elongata_contig46581.11756.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig46581.11756.1 vs. uniprot
Match: D7FT55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT55_ECTSI) HSP 1 Score: 156 bits (394), Expect = 2.710e-43 Identity = 74/122 (60.66%), Postives = 87/122 (71.31%), Query Frame = 1
Query: 1 MCCWTENDNDGMEDNTDVCRYT--ASSQVTHDYPGDSEGDVHCHGFGWPEDSDYHTYIEPLYHYVRNFDHKDYRGYYGSVPDAPECGCIEDMPVVSRSDCTTYS-----KGGLTACKNNDLR 345
MCCWTEND +GM DNTDVCR S T ++PGDSEG+VHCHGF WPED+ YI L +V+NFDH+D RGYYG++ AP CGCIE+MPVVS +DCTTY +G TAC NDLR
Sbjct: 328 MCCWTENDGEGMADNTDVCRVVDYPSMGETLEFPGDSEGEVHCHGFVWPEDAT-DKYIHLLSQFVQNFDHRDRRGYYGNIEGAPMCGCIEEMPVVSEADCTTYDTDPEREGKFTACTKNDLR 448
BLAST of mRNA_H-elongata_contig46581.11756.1 vs. uniprot
Match: D7G2N0_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G2N0_ECTSI) HSP 1 Score: 152 bits (384), Expect = 9.970e-42 Identity = 72/123 (58.54%), Postives = 88/123 (71.54%), Query Frame = 1
Query: 1 MCCWTENDNDGMEDNTDVCR---YTASSQVTHDYPGDSEGDVHCHGFGWPEDSDYHTYIEPLYHYVRNFDHKDYRGYYGSVPDAPECGCIEDMPVVSRSDCTTYS-----KGGLTACKNNDLR 345
MCCWTEND GM DNTDVCR Y + + T +YPG+SEG+VHCHGF WPED+ YI L +V++FDH+D RGY+G++ AP CGCIE+MP VS +DCTTY +G TAC NNDLR
Sbjct: 342 MCCWTENDGQGMADNTDVCRVIDYPSMGETT-EYPGESEGEVHCHGFVWPEDAT-DKYIHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLR 462
BLAST of mRNA_H-elongata_contig46581.11756.1 vs. uniprot
Match: D7G2N2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2N2_ECTSI) HSP 1 Score: 150 bits (378), Expect = 7.730e-40 Identity = 71/123 (57.72%), Postives = 87/123 (70.73%), Query Frame = 1
Query: 1 MCCWTENDNDGMEDNTDVCR---YTASSQVTHDYPGDSEGDVHCHGFGWPEDSDYHTYIEPLYHYVRNFDHKDYRGYYGSVPDAPECGCIEDMPVVSRSDCTTYS-----KGGLTACKNNDLR 345
MCCWTEND GM DNTDVCR Y + + T +YPG+SEG+VHCHGF WPED+ YI L +V++FDH+D RGY+G++ AP CGCIE+MP VS +DCTTY +G TAC NDLR
Sbjct: 299 MCCWTENDGQGMADNTDVCRVIDYPSMGETT-EYPGESEGEVHCHGFVWPEDAT-DKYIHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTKNDLR 419
BLAST of mRNA_H-elongata_contig46581.11756.1 vs. uniprot
Match: D7FT54_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT54_ECTSI) HSP 1 Score: 137 bits (345), Expect = 1.670e-36 Identity = 68/122 (55.74%), Postives = 80/122 (65.57%), Query Frame = 1
Query: 1 MCCWTENDNDGMEDNTDVCRYT--ASSQVTHDYPGDSEGDVHCHGFGWPEDSDYHTYIEPLYHYVRNFDHKDYRGYYGSVPDAPECGCIEDMPVVSRSDCTTYS-----KGGLTACKNNDLR 345
MCCWTEND G+ DNTDVCR S+ T +YPGDSEGDVHCHG WPED+ YI L YV+ FDH +GYYG++ AP CGC EDMP VS++DCT YS + + C NDLR
Sbjct: 276 MCCWTENDAKGVLDNTDVCRIHDYPSAGETLEYPGDSEGDVHCHGIVWPEDAT-DKYIHLLAQYVQTFDHIGNKGYYGNIEGAPMCGCAEDMPEVSKADCTNYSPTEEDEDRIRGCDPNDLR 396
BLAST of mRNA_H-elongata_contig46581.11756.1 vs. uniprot
Match: D7G8D2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D2_ECTSI) HSP 1 Score: 112 bits (280), Expect = 8.720e-29 Identity = 56/120 (46.67%), Postives = 72/120 (60.00%), Query Frame = 1
Query: 1 MCCWTENDNDGMEDNTDVCRYTASSQVTHDYPGDSEGDVHCHGFGWPEDSDYHTYIEPLYHYVRNFDHKDYRGYYGSVPDAPECGCIEDMPVVSRSDCTTYSKGGLT-----ACKNNDLR 345
MCCW + ++DNTDVC Y ++PGDSEG VHCHGF WPE++ +I+ L V +H D + Y G++P AP C C+E+MP VSR+DCT Y K L AC NDLR
Sbjct: 65 MCCWDGRNGLAVKDNTDVCSYRGE-----EFPGDSEGPVHCHGFVWPENAS-DDFIKYLALDVAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLR 178
BLAST of mRNA_H-elongata_contig46581.11756.1 vs. uniprot
Match: D7G8C5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C5_ECTSI) HSP 1 Score: 112 bits (280), Expect = 3.890e-28 Identity = 56/120 (46.67%), Postives = 72/120 (60.00%), Query Frame = 1
Query: 1 MCCWTENDNDGMEDNTDVCRYTASSQVTHDYPGDSEGDVHCHGFGWPEDSDYHTYIEPLYHYVRNFDHKDYRGYYGSVPDAPECGCIEDMPVVSRSDCTTYSKGGLT-----ACKNNDLR 345
MCCW + ++DNTDVC Y ++PGDSEG VHCHGF WPE++ +I+ L V +H D + Y G++P AP C C+E+MP VSR+DCT Y K L AC NDLR
Sbjct: 129 MCCWDGRNGLAVKDNTDVCSYRGE-----EFPGDSEGPVHCHGFVWPENAS-DDFIKYLALDVAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLR 242
BLAST of mRNA_H-elongata_contig46581.11756.1 vs. uniprot
Match: A0A6H5L319_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L319_9PHAE) HSP 1 Score: 115 bits (287), Expect = 5.810e-28 Identity = 59/122 (48.36%), Postives = 74/122 (60.66%), Query Frame = 1
Query: 1 MCCWTENDN-DGMEDNTDVCRYTASSQV--THDYPGDSEGDVHCHGFGWPEDSDYHTYIEPLYHYVRNFDHKDYRGYY-----GSVPDAPECGCIEDMPVVSRSDCTTYSKGGLTACKNNDL 342
MCCWT ND DGM N+DVCR + + + P +SEG V CHGF W E +D T+I PLYHYV+N + G+Y SV PECGCIE++P VS S+C+ YS G+ C NN L
Sbjct: 52 MCCWTGNDGADGMTANSDVCRVLDYPEEGDSFEMPRESEGFVCCHGFAWAEGADVDTHILPLYHYVKNVGRTEEAGFYEMKLPDSVEGTPECGCIEEIPSVSCSECSRYSWEGIAGCGNNGL 173
BLAST of mRNA_H-elongata_contig46581.11756.1 vs. uniprot
Match: D8LHS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHS4_ECTSI) HSP 1 Score: 102 bits (254), Expect = 9.300e-26 Identity = 56/121 (46.28%), Postives = 70/121 (57.85%), Query Frame = 1
Query: 1 MCCWTEN-DNDGMEDNTDVCRYTASSQVTHDYPGDSEGDVHCHGFGWPEDSDYHTYIEPLYHYVRNFDHKDYRGYYGSVPDAPECGCIEDMPVVSRSDCTTYSKGGLT-----ACKNNDLR 345
MCCW+ + + DNTDV RY ++ ++PG+SEGDVHCHG WPE S YI L V H + +GY+G +P AP C C+E MP VSRSDC+ Y L AC NDLR
Sbjct: 1 MCCWSSRVGEEPVSDNTDVYRYGST-----EFPGESEGDVHCHGLVWPEGSS-DEYIIYLALDVAYNHHVEEKGYFGHIPGAPVCDCLERMPEVSRSDCSQYRPAHLKGSDFMACPKNDLR 115
BLAST of mRNA_H-elongata_contig46581.11756.1 vs. uniprot
Match: A0A7S1YUI1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YUI1_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 9.330e-20 Identity = 55/132 (41.67%), Postives = 69/132 (52.27%), Query Frame = 1
Query: 1 MCCWTE----NDNDGM--------------EDNTDVC-----RYTASSQVTHD----YPGDSEGDVHCHGFGWPEDS--DYHTYIEPLYHYVRNFDHKDYRGYYGSVPDAPECGCIEDMPVVSRSDCTTYSK 309
MCCW+ NDN+G DNTD+C R T+SS D + G+ EG +HCHGF W +DS D Y YV +DH RGY +VP AP CGC+E MP+VSRSDCT ++
Sbjct: 8 MCCWSADRQANDNNGNCATPYDTNCKDSDPGDNTDLCAVDMARTTSSSSHVDDGFALFEGNGEGPIHCHGFAWGQDSFEDAARYKGNNLFYVSMYDHMHQRGYVRNVPGAPMCGCLEKMPIVSRSDCTEIAE 139
BLAST of mRNA_H-elongata_contig46581.11756.1 vs. uniprot
Match: A0A7S1CX31_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CX31_CYCTE) HSP 1 Score: 88.2 bits (217), Expect = 1.050e-18 Identity = 61/169 (36.09%), Postives = 76/169 (44.97%), Query Frame = 1
Query: 1 MCCWTE----NDNDGM--------------EDNTDVC-----RYTASSQVTHD---YPGDSEGDVHCHGFGWPEDSDYHT--YIEPLYHYVRNFDHKDYRGYYGSVPDAPECGCIEDMPVVSRSDCT----------------------TYSKGGLTACK-----NNDL 342
MCCWT+ ND++G DNTDVC R S++V Y D EGD HCHGF W + ++ + Y YV +DH RGY +VP AP C C+E MPVV+RSDCT TYS+ AC+ NNDL
Sbjct: 72 MCCWTQDRQANDDNGNCAEPYDENCVDADPADNTDVCYVDMERSPESNRVQQGLAVYENDDEGDAHCHGFAWDTNPNHESAQYKGVNLLYVSMYDHLSERGYVRNVPGAPMCACVEQMPVVTRSDCTEIEFIKSWTGYTLSGDKLSMYITYSEVDFNACQGADNTNNDL 240 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46581.11756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig46581.11756.1 >prot_H-elongata_contig46581.11756.1 ID=prot_H-elongata_contig46581.11756.1|Name=mRNA_H-elongata_contig46581.11756.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp MCCWTENDNDGMEDNTDVCRYTASSQVTHDYPGDSEGDVHCHGFGWPEDSback to top mRNA from alignment at H-elongata_contig46581:2979..3775- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig46581.11756.1 ID=mRNA_H-elongata_contig46581.11756.1|Name=mRNA_H-elongata_contig46581.11756.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=797bp|location=Sequence derived from alignment at H-elongata_contig46581:2979..3775- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig46581:2979..3775- >mRNA_H-elongata_contig46581.11756.1 ID=mRNA_H-elongata_contig46581.11756.1|Name=mRNA_H-elongata_contig46581.11756.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig46581:2979..3775- (Himanthalia elongata Himel1 dioecious)back to top |