mRNA_H-elongata_contig46581.11756.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig46581.11756.1
Unique NamemRNA_H-elongata_contig46581.11756.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig46581.11756.1 vs. uniprot
Match: D7FT55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT55_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 2.710e-43
Identity = 74/122 (60.66%), Postives = 87/122 (71.31%), Query Frame = 1
Query:    1 MCCWTENDNDGMEDNTDVCRYT--ASSQVTHDYPGDSEGDVHCHGFGWPEDSDYHTYIEPLYHYVRNFDHKDYRGYYGSVPDAPECGCIEDMPVVSRSDCTTYS-----KGGLTACKNNDLR 345
            MCCWTEND +GM DNTDVCR     S   T ++PGDSEG+VHCHGF WPED+    YI  L  +V+NFDH+D RGYYG++  AP CGCIE+MPVVS +DCTTY      +G  TAC  NDLR
Sbjct:  328 MCCWTENDGEGMADNTDVCRVVDYPSMGETLEFPGDSEGEVHCHGFVWPEDAT-DKYIHLLSQFVQNFDHRDRRGYYGNIEGAPMCGCIEEMPVVSEADCTTYDTDPEREGKFTACTKNDLR 448          
BLAST of mRNA_H-elongata_contig46581.11756.1 vs. uniprot
Match: D7G2N0_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G2N0_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 9.970e-42
Identity = 72/123 (58.54%), Postives = 88/123 (71.54%), Query Frame = 1
Query:    1 MCCWTENDNDGMEDNTDVCR---YTASSQVTHDYPGDSEGDVHCHGFGWPEDSDYHTYIEPLYHYVRNFDHKDYRGYYGSVPDAPECGCIEDMPVVSRSDCTTYS-----KGGLTACKNNDLR 345
            MCCWTEND  GM DNTDVCR   Y +  + T +YPG+SEG+VHCHGF WPED+    YI  L  +V++FDH+D RGY+G++  AP CGCIE+MP VS +DCTTY      +G  TAC NNDLR
Sbjct:  342 MCCWTENDGQGMADNTDVCRVIDYPSMGETT-EYPGESEGEVHCHGFVWPEDAT-DKYIHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLR 462          
BLAST of mRNA_H-elongata_contig46581.11756.1 vs. uniprot
Match: D7G2N2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2N2_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 7.730e-40
Identity = 71/123 (57.72%), Postives = 87/123 (70.73%), Query Frame = 1
Query:    1 MCCWTENDNDGMEDNTDVCR---YTASSQVTHDYPGDSEGDVHCHGFGWPEDSDYHTYIEPLYHYVRNFDHKDYRGYYGSVPDAPECGCIEDMPVVSRSDCTTYS-----KGGLTACKNNDLR 345
            MCCWTEND  GM DNTDVCR   Y +  + T +YPG+SEG+VHCHGF WPED+    YI  L  +V++FDH+D RGY+G++  AP CGCIE+MP VS +DCTTY      +G  TAC  NDLR
Sbjct:  299 MCCWTENDGQGMADNTDVCRVIDYPSMGETT-EYPGESEGEVHCHGFVWPEDAT-DKYIHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTKNDLR 419          
BLAST of mRNA_H-elongata_contig46581.11756.1 vs. uniprot
Match: D7FT54_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT54_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 1.670e-36
Identity = 68/122 (55.74%), Postives = 80/122 (65.57%), Query Frame = 1
Query:    1 MCCWTENDNDGMEDNTDVCRYT--ASSQVTHDYPGDSEGDVHCHGFGWPEDSDYHTYIEPLYHYVRNFDHKDYRGYYGSVPDAPECGCIEDMPVVSRSDCTTYS-----KGGLTACKNNDLR 345
            MCCWTEND  G+ DNTDVCR     S+  T +YPGDSEGDVHCHG  WPED+    YI  L  YV+ FDH   +GYYG++  AP CGC EDMP VS++DCT YS     +  +  C  NDLR
Sbjct:  276 MCCWTENDAKGVLDNTDVCRIHDYPSAGETLEYPGDSEGDVHCHGIVWPEDAT-DKYIHLLAQYVQTFDHIGNKGYYGNIEGAPMCGCAEDMPEVSKADCTNYSPTEEDEDRIRGCDPNDLR 396          
BLAST of mRNA_H-elongata_contig46581.11756.1 vs. uniprot
Match: D7G8D2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D2_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 8.720e-29
Identity = 56/120 (46.67%), Postives = 72/120 (60.00%), Query Frame = 1
Query:    1 MCCWTENDNDGMEDNTDVCRYTASSQVTHDYPGDSEGDVHCHGFGWPEDSDYHTYIEPLYHYVRNFDHKDYRGYYGSVPDAPECGCIEDMPVVSRSDCTTYSKGGLT-----ACKNNDLR 345
            MCCW   +   ++DNTDVC Y        ++PGDSEG VHCHGF WPE++    +I+ L   V   +H D + Y G++P AP C C+E+MP VSR+DCT Y K  L      AC  NDLR
Sbjct:   65 MCCWDGRNGLAVKDNTDVCSYRGE-----EFPGDSEGPVHCHGFVWPENAS-DDFIKYLALDVAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLR 178          
BLAST of mRNA_H-elongata_contig46581.11756.1 vs. uniprot
Match: D7G8C5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C5_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 3.890e-28
Identity = 56/120 (46.67%), Postives = 72/120 (60.00%), Query Frame = 1
Query:    1 MCCWTENDNDGMEDNTDVCRYTASSQVTHDYPGDSEGDVHCHGFGWPEDSDYHTYIEPLYHYVRNFDHKDYRGYYGSVPDAPECGCIEDMPVVSRSDCTTYSKGGLT-----ACKNNDLR 345
            MCCW   +   ++DNTDVC Y        ++PGDSEG VHCHGF WPE++    +I+ L   V   +H D + Y G++P AP C C+E+MP VSR+DCT Y K  L      AC  NDLR
Sbjct:  129 MCCWDGRNGLAVKDNTDVCSYRGE-----EFPGDSEGPVHCHGFVWPENAS-DDFIKYLALDVAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLR 242          
BLAST of mRNA_H-elongata_contig46581.11756.1 vs. uniprot
Match: A0A6H5L319_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L319_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 5.810e-28
Identity = 59/122 (48.36%), Postives = 74/122 (60.66%), Query Frame = 1
Query:    1 MCCWTENDN-DGMEDNTDVCRYTASSQV--THDYPGDSEGDVHCHGFGWPEDSDYHTYIEPLYHYVRNFDHKDYRGYY-----GSVPDAPECGCIEDMPVVSRSDCTTYSKGGLTACKNNDL 342
            MCCWT ND  DGM  N+DVCR     +   + + P +SEG V CHGF W E +D  T+I PLYHYV+N    +  G+Y      SV   PECGCIE++P VS S+C+ YS  G+  C NN L
Sbjct:   52 MCCWTGNDGADGMTANSDVCRVLDYPEEGDSFEMPRESEGFVCCHGFAWAEGADVDTHILPLYHYVKNVGRTEEAGFYEMKLPDSVEGTPECGCIEEIPSVSCSECSRYSWEGIAGCGNNGL 173          
BLAST of mRNA_H-elongata_contig46581.11756.1 vs. uniprot
Match: D8LHS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHS4_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 9.300e-26
Identity = 56/121 (46.28%), Postives = 70/121 (57.85%), Query Frame = 1
Query:    1 MCCWTEN-DNDGMEDNTDVCRYTASSQVTHDYPGDSEGDVHCHGFGWPEDSDYHTYIEPLYHYVRNFDHKDYRGYYGSVPDAPECGCIEDMPVVSRSDCTTYSKGGLT-----ACKNNDLR 345
            MCCW+     + + DNTDV RY ++     ++PG+SEGDVHCHG  WPE S    YI  L   V    H + +GY+G +P AP C C+E MP VSRSDC+ Y    L      AC  NDLR
Sbjct:    1 MCCWSSRVGEEPVSDNTDVYRYGST-----EFPGESEGDVHCHGLVWPEGSS-DEYIIYLALDVAYNHHVEEKGYFGHIPGAPVCDCLERMPEVSRSDCSQYRPAHLKGSDFMACPKNDLR 115          
BLAST of mRNA_H-elongata_contig46581.11756.1 vs. uniprot
Match: A0A7S1YUI1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YUI1_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 9.330e-20
Identity = 55/132 (41.67%), Postives = 69/132 (52.27%), Query Frame = 1
Query:    1 MCCWTE----NDNDGM--------------EDNTDVC-----RYTASSQVTHD----YPGDSEGDVHCHGFGWPEDS--DYHTYIEPLYHYVRNFDHKDYRGYYGSVPDAPECGCIEDMPVVSRSDCTTYSK 309
            MCCW+     NDN+G                DNTD+C     R T+SS    D    + G+ EG +HCHGF W +DS  D   Y      YV  +DH   RGY  +VP AP CGC+E MP+VSRSDCT  ++
Sbjct:    8 MCCWSADRQANDNNGNCATPYDTNCKDSDPGDNTDLCAVDMARTTSSSSHVDDGFALFEGNGEGPIHCHGFAWGQDSFEDAARYKGNNLFYVSMYDHMHQRGYVRNVPGAPMCGCLEKMPIVSRSDCTEIAE 139          
BLAST of mRNA_H-elongata_contig46581.11756.1 vs. uniprot
Match: A0A7S1CX31_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CX31_CYCTE)

HSP 1 Score: 88.2 bits (217), Expect = 1.050e-18
Identity = 61/169 (36.09%), Postives = 76/169 (44.97%), Query Frame = 1
Query:    1 MCCWTE----NDNDGM--------------EDNTDVC-----RYTASSQVTHD---YPGDSEGDVHCHGFGWPEDSDYHT--YIEPLYHYVRNFDHKDYRGYYGSVPDAPECGCIEDMPVVSRSDCT----------------------TYSKGGLTACK-----NNDL 342
            MCCWT+    ND++G                DNTDVC     R   S++V      Y  D EGD HCHGF W  + ++ +  Y      YV  +DH   RGY  +VP AP C C+E MPVV+RSDCT                      TYS+    AC+     NNDL
Sbjct:   72 MCCWTQDRQANDDNGNCAEPYDENCVDADPADNTDVCYVDMERSPESNRVQQGLAVYENDDEGDAHCHGFAWDTNPNHESAQYKGVNLLYVSMYDHLSERGYVRNVPGAPMCACVEQMPVVTRSDCTEIEFIKSWTGYTLSGDKLSMYITYSEVDFNACQGADNTNNDL 240          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46581.11756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT55_ECTSI2.710e-4360.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2N0_ECTSI9.970e-4258.54Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
D7G2N2_ECTSI7.730e-4057.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FT54_ECTSI1.670e-3655.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G8D2_ECTSI8.720e-2946.67Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G8C5_ECTSI3.890e-2846.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L319_9PHAE5.810e-2848.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHS4_ECTSI9.300e-2646.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1YUI1_9STRA9.330e-2041.67Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S1CX31_CYCTE1.050e-1836.09Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46581contigH-elongata_contig46581:2979..3775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.8
Seed ortholog evalue2.4e-35
Seed eggNOG ortholog2880.D7FT55
EggNOG OGs2E0FN@1,2S7W7@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size345
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930771.2444155-CDS-H-elongata_contig46581:2978..30931622930771.2444155-CDS-H-elongata_contig46581:2978..3093Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46581 2979..3093 -
1691679562.7840972-CDS-H-elongata_contig46581:2978..30931691679562.7840972-CDS-H-elongata_contig46581:2978..3093Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46581 2979..3093 -
1622930771.2657688-CDS-H-elongata_contig46581:3545..37751622930771.2657688-CDS-H-elongata_contig46581:3545..3775Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46581 3546..3775 -
1691679562.8065214-CDS-H-elongata_contig46581:3545..37751691679562.8065214-CDS-H-elongata_contig46581:3545..3775Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46581 3546..3775 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46581.11756.1prot_H-elongata_contig46581.11756.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig46581 2979..3775 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig46581.11756.1

>prot_H-elongata_contig46581.11756.1 ID=prot_H-elongata_contig46581.11756.1|Name=mRNA_H-elongata_contig46581.11756.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
MCCWTENDNDGMEDNTDVCRYTASSQVTHDYPGDSEGDVHCHGFGWPEDS
DYHTYIEPLYHYVRNFDHKDYRGYYGSVPDAPECGCIEDMPVVSRSDCTT
YSKGGLTACKNNDLR
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mRNA from alignment at H-elongata_contig46581:2979..3775-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig46581.11756.1 ID=mRNA_H-elongata_contig46581.11756.1|Name=mRNA_H-elongata_contig46581.11756.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=797bp|location=Sequence derived from alignment at H-elongata_contig46581:2979..3775- (Himanthalia elongata Himel1 dioecious)
ATGTGCTGCTGGACGGAAAATGACAACGATGGCATGGAGGACAACACGGA TGTCTGCCGCTACACCGCCTCATCTCAAGTGACACACGACTACCCCGGAG ACAGCGAGGGAGATGTGCACTGTCACGGGTTCGGCTGGCCCGAAGACTCA GACTACCACACATACATAGAGCCGTTGTACCACTACGTGCGCAACTTCGA CCACAAGGACTACCGAGGCTACTACGGATCGTGAGTTCTGATAAAGAAAT CCCACGACTAGCGAGTATTTCAGAGTGCTCGATCGCAAAGAAGGCTGCTT GCGTGTAGCCCAGCTTACCGCACACCTAGCGGTTACATTTTTATCTTCCA CTAAAACGTGCAAACGATCGATGCTTATCCTCTTGAATAATGACCTATTG AGACTGCTCCGTTCTCTGGACTACTCTCTATAAACGTCCCTCGTTGCAAA ACGAGCTGGCGCCGTCGGTCGTTCTTCTCTTATTATTTTGGCTATATGAA GCCTGCCCAGTGTGATTAAAACTCCTAGCTACTGTCCATGAATCAAAAAT AACATTTATATACCTTCCCGTAGTCTTCTTCATGAGCACACATTATGGCA ACCGCCGATATTCTCCAACGTCGAATATCAAATAAATCAGAATTGTCCGT CTCTGCCCTCTTACCCGCCCATATCTTGTCAGAGTGCCGGACGCGCCCGA GTGTGGGTGCATTGAAGATATGCCAGTCGTGAGCCGGTCGGATTGCACAA CCTACAGCAAGGGCGGGCTTACGGCTTGCAAAAACAACGACCTTCGC
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Coding sequence (CDS) from alignment at H-elongata_contig46581:2979..3775-

>mRNA_H-elongata_contig46581.11756.1 ID=mRNA_H-elongata_contig46581.11756.1|Name=mRNA_H-elongata_contig46581.11756.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig46581:2979..3775- (Himanthalia elongata Himel1 dioecious)
ATGTGCTGCTGGACGGAAAATGACAACGATGGCATGGAGGACAACACGGA
TGTCTGCCGCTACACCGCCTCATCTCAAGTGACACACGACTACCCCGGAG
ACAGCGAGGGAGATGTGCACTGTCACGGGTTCGGCTGGCCCGAAGACTCA
GACTACCACACATACATAGAGCCGTTGTACCACTACGTGCGCAACTTCGA
CCACAAGGACTACCGAGGCTACTACGGATCATGTGCTGCTGGACGGAAAA
TGACAACGATGGCATGGAGGACAACACGGATGTCTGCCGCTACACCGCCT
CATCTCAAGTGACACACGACTACCCCGGAGACAGCGAGGGAGATGTGCAC
TGTCACGGGTTCGGCTGGCCCGAAGACTCAGACTACCACACATACATAGA
GCCGTTGTACCACTACGTGCGCAACTTCGACCACAAGGACTACCGAGGCT
ACTACGGATCAGTGCCGGACGCGCCCGAGTGTGGGTGCATTGAAGATATG
CCAGTCGTGAGCCGGTCGGATTGCACAACCTACAGCAAGGGCGGGCTTAC
GGCTTGCAAAAACAACGACCTTCGCAGTGCCGGACGCGCCCGAGTGTGGG
TGCATTGAAGATATGCCAGTCGTGAGCCGGTCGGATTGCACAACCTACAG
CAAGGGCGGGCTTACGGCTTGCAAAAACAACGACCTTCGC
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