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Homology
BLAST of mRNA_H-elongata_contig46561.11753.1 vs. uniprot
Match: A0A6H5J9X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9X3_9PHAE) HSP 1 Score: 122 bits (306), Expect = 1.000e-25 Identity = 69/152 (45.39%), Postives = 87/152 (57.24%), Query Frame = 1
Query: 13 CMLPLEDPCTPGTSSSNINTGIGLFYSLACNSTDAESDSVPGCNTDPTNLCRDCFFNTTLYQVKNPGEELPDYVDCPCCVLEEYRKDSAVNEDGPLCENFTPTP-------VRAGDAFYTKPFD---FRDAQRKYGGGEGIALAALVLLRGL 438
C+LP PCT TS SN N GIG +Y AC + E + + GCN D ++LCR CFFNT LY K+P E+LPDY DCPCCVL+ Y +D A N DG C + +P P + G+ + FD F D + GE AL+AL LL L
Sbjct: 412 CILPESKPCTEATSFSNTNEGIGDYYDPACELVEGE-EQLGGCNADASSLCRMCFFNTPLYVAKHPDEDLPDYPDCPCCVLDIYEQD-AFNLDGQRCVSASPAPSSPALTEIPVGE-ITPRGFDDLSFDDGGWEMNAGEVAALSALGLLAAL 560
BLAST of mRNA_H-elongata_contig46561.11753.1 vs. uniprot
Match: A0A6H5J9W9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9W9_9PHAE) HSP 1 Score: 120 bits (300), Expect = 1.020e-24 Identity = 57/114 (50.00%), Postives = 74/114 (64.91%), Query Frame = 1
Query: 1 DGMECMLPLEDPCTPGTSS-SNINTGIGLFYSLACNS---TDAESDSVP-GCNTDPTNLCRDCFFNTTLYQVKNPGEELPDYVDCPCCVLEEYRKDSAVNEDGPLCENFTPTPV 327
+G ECM+P PCT S+ S+ N G+G FY C + T +E +P GC+ + CR C FNT +Q KNPGE+LPD VDCPCCVL+ Y++D+A+NEDG CE TP PV
Sbjct: 535 EGQECMIPEGAPCTSTASTFSHTNQGVGSFYDPTCAAAAATASEEGELPEGCDPSSADSCRFCLFNTPRWQDKNPGEDLPDLVDCPCCVLDIYKEDTAINEDGVRCEWMTPAPV 648
BLAST of mRNA_H-elongata_contig46561.11753.1 vs. uniprot
Match: D8LE44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE44_ECTSI) HSP 1 Score: 105 bits (261), Expect = 4.780e-21 Identity = 47/103 (45.63%), Postives = 69/103 (66.99%), Query Frame = 1
Query: 1 DGMECMLPLEDPCTPGTSS-SNINTGIGLFYSLACNS---TDAESDSVP-GCNTDPTNLCRDCFFNTTLYQVKNPGEELPDYVDCPCCVLEEYRKDSAVNEDG 294
+G ECM+P E PCT ++ ++ N G+G +Y C + T +E +P GC+ + CR C FNT +Q KNPGE+LPD VDCPCCV++ Y++D+A++EDG
Sbjct: 213 EGQECMIPEEAPCTSTAATIAHTNQGVGSYYDPTCAAAAATASEEGELPEGCDPSSADSCRFCLFNTPRWQDKNPGEDLPDLVDCPCCVVDVYKEDTAISEDG 315
BLAST of mRNA_H-elongata_contig46561.11753.1 vs. uniprot
Match: A0A6H5JBT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBT9_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 2.830e-18 Identity = 50/139 (35.97%), Postives = 71/139 (51.08%), Query Frame = 1
Query: 13 CMLPLEDPCTPGTSSSNINTGIGLFYSLACNSTDAESDSVPGCNTDPTNLCRDCFFNTTLYQVKNPGE-ELPDYVDCPCCVLEEYRKDSAVNEDGPLCENFTPTPVRAGDAFYTKPFDFRDAQRKYGGGEGIALAALVL 426
C PL+ PCT T S+IN G+G +Y C S GC + LCR C+FN T+ + N + ++PDY +CPCCV++EY + + C TP+P + + + F D GGEG A+AAL L
Sbjct: 469 CTWPLDGPCTTETLFSDINRGLGAYYDPGC--------SGAGCGVGDSGLCRTCYFNLTMGEEGNDDDVDMPDYPECPCCVMDEYDRSAD------RCVGATPSPAQGTGTEALETYSFEDKPLDMSGGEGFAVAALAL 593
BLAST of mRNA_H-elongata_contig46561.11753.1 vs. uniprot
Match: D8LE45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE45_ECTSI) HSP 1 Score: 60.8 bits (146), Expect = 3.290e-8 Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 1
Query: 172 CFFNTTLYQVKNPGEELPDYVDCPCCVLEEYRKDS 276
CFFNT LY K+P E+LPDY DCPCCVL+ Y +D+
Sbjct: 2 CFFNTPLYVEKHPDEDLPDYPDCPCCVLDIYEQDA 36
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-05_004120.1 |
| Exons | 5 |
| Model size | 1811 |
| Cds size | 591 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622930770.8828611-UTR-H-elongata_contig46561:246..1311 | 1622930770.8828611-UTR-H-elongata_contig46561:246..1311 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig46561 247..1311 - |
| 1691679562.5967593-UTR-H-elongata_contig46561:246..1311 | 1691679562.5967593-UTR-H-elongata_contig46561:246..1311 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig46561 247..1311 - |
| 1622930770.8966842-UTR-H-elongata_contig46561:1364..1513 | 1622930770.8966842-UTR-H-elongata_contig46561:1364..1513 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig46561 1365..1513 - |
| 1691679562.6088014-UTR-H-elongata_contig46561:1364..1513 | 1691679562.6088014-UTR-H-elongata_contig46561:1364..1513 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig46561 1365..1513 - |
| 1622930770.9872208-UTR-H-elongata_contig46561:4218..4224 | 1622930770.9872208-UTR-H-elongata_contig46561:4218..4224 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig46561 4219..4224 - |
| 1691679562.6565852-UTR-H-elongata_contig46561:4218..4224 | 1691679562.6565852-UTR-H-elongata_contig46561:4218..4224 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig46561 4219..4224 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622930770.9079647-CDS-H-elongata_contig46561:1513..1681 | 1622930770.9079647-CDS-H-elongata_contig46561:1513..1681 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig46561 1514..1681 - |
| 1691679562.617626-CDS-H-elongata_contig46561:1513..1681 | 1691679562.617626-CDS-H-elongata_contig46561:1513..1681 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig46561 1514..1681 - |
| 1622930770.9227393-CDS-H-elongata_contig46561:1787..1915 | 1622930770.9227393-CDS-H-elongata_contig46561:1787..1915 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig46561 1788..1915 - |
| 1691679562.6257274-CDS-H-elongata_contig46561:1787..1915 | 1691679562.6257274-CDS-H-elongata_contig46561:1787..1915 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig46561 1788..1915 - |
| 1622930770.944743-CDS-H-elongata_contig46561:2906..3059 | 1622930770.944743-CDS-H-elongata_contig46561:2906..3059 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig46561 2907..3059 - |
| 1691679562.6338081-CDS-H-elongata_contig46561:2906..3059 | 1691679562.6338081-CDS-H-elongata_contig46561:2906..3059 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig46561 2907..3059 - |
| 1622930770.9637992-CDS-H-elongata_contig46561:4076..4218 | 1622930770.9637992-CDS-H-elongata_contig46561:4076..4218 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig46561 4077..4218 - |
| 1691679562.6425266-CDS-H-elongata_contig46561:4076..4218 | 1691679562.6425266-CDS-H-elongata_contig46561:4076..4218 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig46561 4077..4218 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig46561.11753.1 >prot_H-elongata_contig46561.11753.1 ID=prot_H-elongata_contig46561.11753.1|Name=mRNA_H-elongata_contig46561.11753.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=197bp
MECMLPLEDPCTPGTSSSNINTGIGLFYSLACNSTDAESDSVPGCNTDPT NLCRDCFFNTTLYQVKNPGEELPDYVDCPCCVLEEYRKDSAVNEDGPLCE NFTPTPVRAGDAFYTKPFDFRDAQRKYGGGEGIALAALVLLRGLFRSLFG TGANDNMLKIFEVRFVLDVVVALACVYPEARRVILEKTRILRCFAL* back to topmRNA from alignment at H-elongata_contig46561:247..4224- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig46561.11753.1 ID=mRNA_H-elongata_contig46561.11753.1|Name=mRNA_H-elongata_contig46561.11753.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3978bp|location=Sequence derived from alignment at H-elongata_contig46561:247..4224- (Himanthalia elongata Himel1 dioecious) GACGGTATGGAGTGCATGCTGCCGTTGGAAGACCCGTGCACGCCAGGAAC
TTCTTCGTCTAACATCAACACAGGCATAGGGTTGTTCTACAGCCTGGCTT
GCAACAGCACTGACGCCGAATCGGATTCCGTGCCCGGGTGCAACACGGGT
GGGTTTTTCTGGAGGTGGCTACTGAGTGTGTTTAGAAAAGAAACAAGAGA
AGCACGGAGGGACAGGTGTCAAAATCACGCTCGCCATCACTTTTGTTTTA
TTTATTTTTTGCGAGAGCGGCACGACGTTCTCTTGTGTTTTGGTACGCGG
TTGTTTTTTTAATCCTTAGAGTTTACTCGCAAAGTTACGCCCGACGCCAT
CCCCTGACGGTGACGATCCAAAATTAATCACTTAAGACTCTTCTCCTCCT
ATTCACATTTGAGGTGCCGCGTAGGTTACGGGGAGTAAAATACACCCCCG
CAGACGGAAATCCCCCCCCCCCCTTGTTAACCCATGGCATGTCAGGTTTG
GTGTAGCTAACGCGAGGATGATGATCTAACGGCTGGTATCACTGTTGTGA
AACATAAGCCTGACCGGCGAAAACTGGCATTGTTGAGATTCGTGATCTAA
ATCCGTTAGAATACGACGTGCGTTTAGCACAAGTACGCTCCATCACCCCC
CCTTGAATTTCTCAAGAACTCGGCCGTTGTTCACACGAAAAAATACGGAT
TTTGAAAAACTCTCGCGAAGGTCTCCTTGATTTTGTGGGGGTTTAACCCC
ATGGGCGCTTGCGCTGTCATATACATATCCCTACCTCTCCTCTCCCCAAC
CCCCCGCGCCATTGTGTTGGAAGACATATCCGCCTGAGGACATAAGTAAT
CATTCCCCTTTTAATCGAGGATTTGTTCCACTTCATCCCCTACGGCTTCA
CATCTCGGTCGATAAAGCGCCTTCCCGCGAGGCGCTGAAACTTCGAACTA
GCTTGTCTGCAGTACTAATCACGTTCAGCGAATTAATAGGTTCCAGAAAT
GTGGCAGTCTGGCAGAATATATAGGGCTGCGGATCGGCCAAACATGTGCG
TCACCGAAGCGTTTAACAGTGTTTTCGGTTCGGTTATGCGGGAAGTTTTC
ACAGTCCCGTCTCGTGCGGCGTTATGTTTCTGCTACCGTCTTGTGTGTCG
ATCTCGGCCCTGCAGACCCCACGAACTTGTGCCGGGACTGCTTCTTCAAT
ACCACTCTCTACCAGGTGAAAAACCCTGGCGAGGAGCTCCCGGACTACGT
TGACTGTCCCTGCTGCGTATTGGAAGAGTATCGCAAAGACAGCGCCGTGA
ACGAGGACGGGCCGCTATGTGAGACATCGTCCTACTTATCATTGCTTGTT
TGTTTCGTCTGATATTTGTGGGTTTTCATTTTATATTTGAGGTTTTTATT
TTCAACGATATATATATATATAATATATATATATTATTTTTTTCCCGCTT
CTTGTCACTTTGTACCGATGGGACAAATCAATTTGCTAGGTTTCCATTAC
CACCTTTGACCGTAACGGATATATCTATGCCCTATAGCCCTCTCCGGGCA
ATGCCAACGATAAAAAGCTTATGTAATTTTAATAACATCGCCTCTACACA
TCAACTAATGGTTGTACGCACGAAATGGCGCTTTCCGTTACACAAGGGCG
TTTGATTTCAAAACTGCTGAACCACTGGTTGTGTAGGCTACTGATAACTA
CCGTACTTGAACAATAAAGTGTCTGATTGGGACGTTTGTGTGTTTTGCTT
TGTTTCGCTTCGACTTTGGGGTTTAAAGCCTTGCTCATAGTCTGATGCAA
AAGCCCTTAAAATCTCGGAATGGGTTTTGTAGCCAGGTTTTCCTCAGCTT
CGTGGCCATCTGGGTAGATCATTATATAGGATATGTAATTAGTGCGTCGG
AAACCTCGCTCTCATTCCCCGTGGTGTTCATATTTTCAAACTTGATACAG
ATGGATTGACGCGGTTGTAGACGACCACATAGCTGTGCGGACTCGCATAC
GGCATTGCCAGTACACTAAACGCCGTACACACGACTGGCATAAGAAAACG
GCCTGAAGCACGAACCATTTCGCAGGAAGATCCGTCCGATGGACCGTTTT
AGGGACTTAATCTGCCTATATACGCCTATGTTCATCTGGAACAGCAGCAG
ACGAAAAGTACTGGCCTGTATAAACGGGCTGAGCCGCCGTGCAGGCGGTA
TCGAATCACAGCTTTAACGAAGCGTCTCTCCGCGCCCCGACCCTGTTCCC
CATCTATGTGGCCTACCCTTGCTGCGTCTACACCCTCGGCGAACCCTTGT
CTTCGACAGGCGAGAACTTTACCCCTACACCAGTCAGGGCGGGAGACGCG
TTCTACACAAAACCTTTCGACTTTAGGGACGCGCAGAGAAAATACGGGGG
CGGCGAGGGAATAGCGCTCGCGGCGCTTGTGCTGCTGGGTGTGTTTACTT
TTTCTCCGTTTTGCGCAAAGTGAAAACGCGCACGCGCGCGCGAGCTTTGT
CGGTCATGCTTGGGGTCTCACTGGCGTTTGCTCTCGTTTTGTTCGTGGTT
TATTTCGATCTTTATTCGGCACGGGTGCCAACGACAACATGTTAAAAATA
TTTGAAGTTCGATTCGTTTTGGATGTAGTTGTTGCTTTGGCTTGTGTGTA
CCCCGAGGCGAGGCGCGTCATTTTGGAGAAGACGCGTATTTTGCGGTGTT
TCGCTTTATAGAGAACCACGCGGCACGCTTCGGAGCAGCCATCCCACCGT
CAAATATTGTTACTGGTACCTGGAGGCATAAGGATGTGTTTCTTGCTTCA
AAAGGAAAAAGGATGAATCTTGGCGGCGCCATCGATATCATACGAAGTAT
ATGATGCTTCCCTCGTGCTGCCGCGCTGTAGCCCCCGCGGAGTTGAACGC
TCGGCTTGCGCGCGACGTCACCGTGTACGCAAACGCCAGCGGCGTTTTCC
TGTGATTCCCACGATACACTAAGCGATGAGCTCCTATCCTTTGGTTTTCT
TGTAATAGATCGTACCCAAGTAATTTCTACACAGAGTCAAATCCTCTCGA
AAAGGACTGGAACCCCTGTCTTCCCCTAGGTTGGTGGGCTAAGGTTGTTA
AGAGGCATGTAAAAGCTACACATACATGACGATCATGTCCTCCCTCATGC
GCCTGGTCTCTGGTTCCAGCTGTACTATCTTGAGAGAGATGCACTGCGGT
GTCTGGCCTTCCGTCGTGGGGTTCATTGTGGAGGTCGAAGTGCAGTTATA
TTTTTCGTTTTACATTACGGTGATGTAGTTTGCCGCGTGCGTGTAGTCTA
GAGCTATCATTGTTATGTGGGAGTGGGAGTAACGAGTGTAAAGTTAGCAT
GTTGATTCCAAGAGTCAGCAGACACGCGGGGCACTTTGCTAGTCGATCTG
CGTGACGCTGCGTGGTTTCGTATCTTGCGAAGATACACCCGGTGTGTCAT
ACGCGTTCCCATCTTCTTTTTGATGTGTCTTGCGCGTATCGCAAATTTCT
TGAATAGCGTGATTTTTTCGTCGCAGAGATTAAAGGTTTCTTAGTTTGTT
TTTTGTTAGTGTACTTGTCGGAAGAGCAGCAGAAAATTACACCCAGCTTT
CCCTCGAACGACACAGGATTGACTTTGTCCGGTGTATTTTGACGAGCGAC
CTGTGGCGTATGGAATGTGGCGGGTTTGCACGGGGTGATGAATCTAGCTG
TGCCGGCGGGCATTCCATTCATAGTGTTGGGACTCGGTGTAAGTAAAACC
GAGGACATGAGCTTCGACTCGATGTATAATACGGCCATGTTCTACGTGGA
CGTTGGTACGGTTATTTCGAGATTCTAACTCTGTTGATGACTGTCGTGTA
GAGCGTATATGAAAATGCTTATCTATTGTTATCTCGAACCTATGGTACGT
TTAAGGTAGAGGTGCGACCCGCCGATGATGTTTGTGAAGCCGGGAGACTC
CAATCATCAGCGGGAGATATCAGGGATC back to topCoding sequence (CDS) from alignment at H-elongata_contig46561:247..4224- >mRNA_H-elongata_contig46561.11753.1 ID=mRNA_H-elongata_contig46561.11753.1|Name=mRNA_H-elongata_contig46561.11753.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1182bp|location=Sequence derived from alignment at H-elongata_contig46561:247..4224- (Himanthalia elongata Himel1 dioecious) ATGGAGTGCATGCTGCCGTTGGAAGACCCGTGCACGCCAGGAACTTCTTC GTCTAACATCAACACAGGCATAGGGTTGTTCTACAGCCTGGCTTGCAACA GCACTGACGCCGAATCGGATTCCGTGCCCGGGTGCAACACGGATGGAGTG CATGCTGCCGTTGGAAGACCCGTGCACGCCAGGAACTTCTTCGTCTAACA TCAACACAGGCATAGGGTTGTTCTACAGCCTGGCTTGCAACAGCACTGAC GCCGAATCGGATTCCGTGCCCGGGTGCAACACGGACCCCACGAACTTGTG CCGGGACTGCTTCTTCAATACCACTCTCTACCAGGTGAAAAACCCTGGCG AGGAGCTCCCGGACTACGTTGACTGTCCCTGCTGCGTATTGGAAGAGTAT CGCAAAGACAGCGCCGTGAACGAGGACGGGCCGCTATACCCCACGAACTT GTGCCGGGACTGCTTCTTCAATACCACTCTCTACCAGGTGAAAAACCCTG GCGAGGAGCTCCCGGACTACGTTGACTGTCCCTGCTGCGTATTGGAAGAG TATCGCAAAGACAGCGCCGTGAACGAGGACGGGCCGCTATGCGAGAACTT TACCCCTACACCAGTCAGGGCGGGAGACGCGTTCTACACAAAACCTTTCG ACTTTAGGGACGCGCAGAGAAAATACGGGGGCGGCGAGGGAATAGCGCTC GCGGCGCTTGTGCTGCTGGCGAGAACTTTACCCCTACACCAGTCAGGGCG GGAGACGCGTTCTACACAAAACCTTTCGACTTTAGGGACGCGCAGAGAAA ATACGGGGGCGGCGAGGGAATAGCGCTCGCGGCGCTTGTGCTGCTGCGTG GTTTATTTCGATCTTTATTCGGCACGGGTGCCAACGACAACATGTTAAAA ATATTTGAAGTTCGATTCGTTTTGGATGTAGTTGTTGCTTTGGCTTGTGT GTACCCCGAGGCGAGGCGCGTCATTTTGGAGAAGACGCGTATTTTGCGGT GTTTCGCTTTATAGCGTGGTTTATTTCGATCTTTATTCGGCACGGGTGCC AACGACAACATGTTAAAAATATTTGAAGTTCGATTCGTTTTGGATGTAGT TGTTGCTTTGGCTTGTGTGTACCCCGAGGCGAGGCGCGTCATTTTGGAGA AGACGCGTATTTTGCGGTGTTTCGCTTTATAG back to top
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