mRNA_H-elongata_contig46535.11749.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig46535.11749.1
Unique NamemRNA_H-elongata_contig46535.11749.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig46535.11749.1 vs. uniprot
Match: A0A6H5L4N4_9PHAE (RNA cytidine acetyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4N4_9PHAE)

HSP 1 Score: 331 bits (849), Expect = 1.620e-103
Identity = 161/176 (91.48%), Postives = 170/176 (96.59%), Query Frame = 1 
Query:    1 GHHRLVCGTPAPKDCELYYVDKDALFSYHDLSEGFLQRVMSLYTSAHYKNQPNDLQMLSDAPAHHLFVLLGPKAMDQGEKGHLPDVLVVVQVALEGRISRTSLEASLSRGHRASGDLIPWSLSQQFQDGQFAGLSGARIVRIATHSDVQKMGYGSRAIDLLTRYYEGTLFLGTAGD 528
            GHHRLVCGTPAPKDCELYYV+KDALFSYH LSEGFLQRVMSLYTSAHYKNQPNDLQMLSDAPAHHLFVLLGPKAM+QG KG+LPDVLVVVQVALEG+ISR SLEASLSRGHRASGDLIPWSLSQQ+QDGQFAGLSGARIVRIATH+DVQKMGYGSRAI+LLT+YYEG LF GT G+
Sbjct:  500 GHHRLVCGTPAPKDCELYYVNKDALFSYHTLSEGFLQRVMSLYTSAHYKNQPNDLQMLSDAPAHHLFVLLGPKAMEQGAKGNLPDVLVVVQVALEGQISRASLEASLSRGHRASGDLIPWSLSQQYQDGQFAGLSGARIVRIATHTDVQKMGYGSRAIELLTKYYEGGLFSGTGGE 675
[Close]
BLAST of mRNA_H-elongata_contig46535.11749.1 vs. uniprot
Match: A0A225UC75_9STRA (N-acetyltransferase 10 (Fragment) n=2 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UC75_9STRA)

HSP 1 Score: 263 bits (671), Expect = 8.730e-85
Identity = 124/173 (71.68%), Postives = 146/173 (84.39%), Query Frame = 1 
Query:    7 HRLVCGTPAPKDCELYYVDKDALFSYHDLSEGFLQRVMSLYTSAHYKNQPNDLQMLSDAPAHHLFVLLGPKAMDQGEKGHLPDVLVVVQVALEGRISRTSLEASLSRGHRASGDLIPWSLSQQFQDGQFAGLSGARIVRIATHSDVQKMGYGSRAIDLLTRYYEGTLFLGTAG 525
            HRLV GTP P+DCELYYV++D+LFSYH LSE FLQR+M+LY S+HYKNQPNDLQ+LSDAPAHH+F LLGP A  QG  G LPDVL VVQVALEG IS+ S++A L+RG RASGDLIPW+++QQFQD +FA LSGAR+VRIATH DV  MGYGSRAI+LLT+YY+G +    AG
Sbjct:  115 HRLVAGTPHPRDCELYYVNRDSLFSYHKLSESFLQRIMALYVSSHYKNQPNDLQLLSDAPAHHVFALLGPGAESQGNAGQLPDVLCVVQVALEGEISKASVKAQLARGQRASGDLIPWTVAQQFQDSEFAALSGARVVRIATHPDVTGMGYGSRAIELLTKYYQGEITSDVAG 287
[Close]
BLAST of mRNA_H-elongata_contig46535.11749.1 vs. uniprot
Match: NAT10_ACHAM (RNA cytidine acetyltransferase (Fragment) n=1 Tax=Achlya ambisexualis TaxID=4768 RepID=NAT10_ACHAM)

HSP 1 Score: 262 bits (670), Expect = 4.330e-84
Identity = 124/182 (68.13%), Postives = 154/182 (84.62%), Query Frame = 1 
Query:    7 HRLVCGTPAPKDCELYYVDKDALFSYHDLSEGFLQRVMSLYTSAHYKNQPNDLQMLSDAPAHHLFVLLGPKAMDQGEKGHLPDVLVVVQVALEGRISRTSLEASLSRGHRASGDLIPWSLSQQFQDGQFAGLSGARIVRIATHSDVQKMGYGSRAIDLLTRYYEGTLFLGTAGDGEQSEESS 552
            +R++ GTP P++CELYYVD+D+LFSYH LSE FLQR+M+LY ++HYKNQPNDLQ+LSDAPAHH+FVLLGP+A  QG  G LPDVL VVQVALEG IS+ S+ A LSRG RASGDLIPW+++QQFQD +FAGLSGAR+VRIATH DV  MGYGSRA++LLT+YY+G L    +G+ E+  E++
Sbjct:   77 NRIIGGTPHPRECELYYVDRDSLFSYHKLSESFLQRIMALYVASHYKNQPNDLQLLSDAPAHHIFVLLGPQAEGQGNAGQLPDVLCVVQVALEGEISKESVAAQLSRGQRASGDLIPWTVAQQFQDNEFAGLSGARVVRIATHPDVTGMGYGSRAVELLTKYYQGEL---ASGEFEEENEAA 255
[Close]
BLAST of mRNA_H-elongata_contig46535.11749.1 vs. uniprot
Match: A0A7S4D5F4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5F4_HETAK)

HSP 1 Score: 252 bits (643), Expect = 7.070e-82
Identity = 124/178 (69.66%), Postives = 143/178 (80.34%), Query Frame = 1 
Query:    1 GHHRLVCGTPAPKDCELYYVDKDALFSYHDLSEGFLQRVMSLYTSAHYKNQPNDLQMLSDAPAHHLFVLLGPKAMDQGEKGH-LPDVLVVVQVALEGRISRTSLEASLSRGHRASGDLIPWSLSQQFQDGQFAGLSGARIVRIATHSDVQKMGYGSRAIDLLTRYYEGTLFLGTAGDG 531
            G HRL  G PAP DCELYYVD+DALFSYH LSE FLQRV  LYT+AHY+N PNDL +LSDAPAHHLFVLLGP AM++   G  LPDVL V+QV +EG+ISR  LEA+L +G+RA+GDLIPW+LSQQF D  FA LSGAR+VR+ATH DVQ+MGYG+RA+DLL RYY G L  G  G G
Sbjct:   56 GAHRLSGGAPAPGDCELYYVDRDALFSYHALSEAFLQRVWGLYTAAHYRNTPNDLHLLSDAPAHHLFVLLGPDAMERAAAGGGLPDVLCVLQVVMEGQISREGLEAALRKGYRAAGDLIPWTLSQQFNDSGFAQLSGARVVRVATHPDVQRMGYGTRALDLLLRYYRGELVGGLPGAG 233
[Close]
BLAST of mRNA_H-elongata_contig46535.11749.1 vs. uniprot
Match: K3XCC4_GLOUD (RNA cytidine acetyltransferase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XCC4_GLOUD)

HSP 1 Score: 267 bits (682), Expect = 7.770e-80
Identity = 126/167 (75.45%), Postives = 144/167 (86.23%), Query Frame = 1 
Query:    7 HRLVCGTPAPKDCELYYVDKDALFSYHDLSEGFLQRVMSLYTSAHYKNQPNDLQMLSDAPAHHLFVLLGPKAMDQGEKGHLPDVLVVVQVALEGRISRTSLEASLSRGHRASGDLIPWSLSQQFQDGQFAGLSGARIVRIATHSDVQKMGYGSRAIDLLTRYYEGTL 507
            HR+V GTP PKDCELYYV++D+LFSYH LSE FLQR+MSLY S+HYKNQPNDLQ+LSDAPAHH+F LLGP A  QG  G LPDVL VVQVALEG IS+ S++A LSRG RASGDLIPW++SQQFQD +FA LSGAR+VRIATH DV  MGYGSRAIDLLT+YY+G +
Sbjct:  521 HRIVAGTPHPKDCELYYVNRDSLFSYHKLSESFLQRIMSLYVSSHYKNQPNDLQLLSDAPAHHIFALLGPAAESQGNAGQLPDVLCVVQVALEGEISKESVKAQLSRGQRASGDLIPWTVSQQFQDSEFASLSGARVVRIATHPDVTGMGYGSRAIDLLTKYYQGEI 687
[Close]
BLAST of mRNA_H-elongata_contig46535.11749.1 vs. uniprot
Match: A0A8K1FEC9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FEC9_PYTOL)

HSP 1 Score: 265 bits (676), Expect = 5.180e-79
Identity = 126/167 (75.45%), Postives = 144/167 (86.23%), Query Frame = 1 
Query:    7 HRLVCGTPAPKDCELYYVDKDALFSYHDLSEGFLQRVMSLYTSAHYKNQPNDLQMLSDAPAHHLFVLLGPKAMDQGEKGHLPDVLVVVQVALEGRISRTSLEASLSRGHRASGDLIPWSLSQQFQDGQFAGLSGARIVRIATHSDVQKMGYGSRAIDLLTRYYEGTL 507
            HR+V GTP PKDCELYYV++D+LFSYH LSE FLQRVMSLY S+HYKNQPNDLQ+LSDAPAHH+F LLGP A  QG  G LPDVL VVQVALEG IS+ S++A LSRG RASGDLIPW+++QQFQD +FA LSGARIVRIATH DV  MGYGSRAI+LLT+YY+G +
Sbjct:  521 HRIVAGTPHPKDCELYYVNRDSLFSYHKLSEAFLQRVMSLYVSSHYKNQPNDLQLLSDAPAHHIFALLGPSAESQGNAGQLPDVLCVVQVALEGEISKESVKAQLSRGQRASGDLIPWTVAQQFQDSEFATLSGARIVRIATHPDVTGMGYGSRAIELLTKYYQGEI 687
[Close]
BLAST of mRNA_H-elongata_contig46535.11749.1 vs. uniprot
Match: A0A835Z409_9STRA (RNA cytidine acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z409_9STRA)

HSP 1 Score: 264 bits (675), Expect = 7.530e-79
Identity = 124/170 (72.94%), Postives = 150/170 (88.24%), Query Frame = 1 
Query:    1 GHHRLVCGTPAPKDCELYYVDKDALFSYHDLSEGFLQRVMSLYTSAHYKNQPNDLQMLSDAPAHHLFVLLGPKAMDQGEKGHLPDVLVVVQVALEGRISRTSLEASLSRGHRASGDLIPWSLSQQFQDGQFAGLSGARIVRIATHSDVQKMGYGSRAIDLLTRYYEGTLF 510
            G  RLV GTP+P+DCEL+YVD+DALFSYH LSE FLQRVMSLYT+AHYKNQPNDLQ+LSDAPAHHLFVLLGP A  QG +G LPDVL V+QVALEG+IS+ S++A+L++G R+SGDLIPW+LSQQFQD +FAGLSGARIVR+ATH DVQ MGYG+RA+ L+ +Y+E  ++
Sbjct:  524 GMQRLVMGTPSPRDCELFYVDRDALFSYHKLSEAFLQRVMSLYTAAHYKNQPNDLQLLSDAPAHHLFVLLGPTAEKQGARGELPDVLCVIQVALEGQISKASVQAALAKGQRSSGDLIPWTLSQQFQDTEFAGLSGARIVRVATHPDVQGMGYGARAMQLMLQYFEVCMY 693
[Close]
BLAST of mRNA_H-elongata_contig46535.11749.1 vs. uniprot
Match: A0A5D6Y1L7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1L7_9STRA)

HSP 1 Score: 260 bits (665), Expect = 1.260e-78
Identity = 123/167 (73.65%), Postives = 143/167 (85.63%), Query Frame = 1 
Query:    7 HRLVCGTPAPKDCELYYVDKDALFSYHDLSEGFLQRVMSLYTSAHYKNQPNDLQMLSDAPAHHLFVLLGPKAMDQGEKGHLPDVLVVVQVALEGRISRTSLEASLSRGHRASGDLIPWSLSQQFQDGQFAGLSGARIVRIATHSDVQKMGYGSRAIDLLTRYYEGTL 507
            HR+V GTP PKDCELYYV++D+LFSYH LSE FLQR+MSLY S+HYKNQPNDLQ+LSDAPAHH+F LLGP A  QG  G LPDVL VVQVALEG IS+ S+ A L+RG RASGDLIPW+++QQFQD +FA LSGAR+VRIATH DV  MGYGSRAI+LLT+YY+G +
Sbjct:  521 HRIVAGTPHPKDCELYYVNRDSLFSYHKLSESFLQRIMSLYVSSHYKNQPNDLQLLSDAPAHHIFALLGPAAEAQGNAGQLPDVLCVVQVALEGAISKESVTAQLARGQRASGDLIPWTVAQQFQDSEFAALSGARVVRIATHPDVTGMGYGSRAIELLTQYYQGEV 687
[Close]
BLAST of mRNA_H-elongata_contig46535.11749.1 vs. uniprot
Match: A0A2D4BXV5_PYTIN (RNA cytidine acetyltransferase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXV5_PYTIN)

HSP 1 Score: 264 bits (675), Expect = 3.090e-78
Identity = 130/181 (71.82%), Postives = 150/181 (82.87%), Query Frame = 1 
Query:    7 HRLVCGTPAPKDCELYYVDKDALFSYHDLSEGFLQRVMSLYTSAHYKNQPNDLQMLSDAPAHHLFVLLGPKAMDQGEKGHLPDVLVVVQVALEGRISRTSLEASLSRGHRASGDLIPWSLSQQFQDGQFAGLSGARIVRIATHSDVQKMGYGSRAIDLLTRYYEGTLFLGTAGDGEQSEES 549
            HR+V GTP PKDCELYYV++D+LFSYH LSE FLQRVMSLY S+HYKNQPNDLQ+LSDAPAHH+F LLGP A  QG  G LPDVL VVQVALEG IS+ S++A LSRG RASGDLIPW+++QQFQD +FA LSGARIVRIATH DV  MGYGSRAI+LLT+YY+G +  G   D E ++ S
Sbjct:  887 HRIVAGTPHPKDCELYYVNRDSLFSYHKLSEAFLQRVMSLYVSSHYKNQPNDLQLLSDAPAHHIFALLGPGAEAQGNAGQLPDVLCVVQVALEGEISKDSVKAQLSRGQRASGDLIPWTVAQQFQDSEFATLSGARIVRIATHPDVVGMGYGSRAIELLTKYYQGEI-TGDVADDETADAS 1066
[Close]
BLAST of mRNA_H-elongata_contig46535.11749.1 vs. uniprot
Match: A0A1V9YCU8_9STRA (RNA cytidine acetyltransferase n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9YCU8_9STRA)

HSP 1 Score: 262 bits (669), Expect = 4.500e-78
Identity = 125/183 (68.31%), Postives = 154/183 (84.15%), Query Frame = 1 
Query:    7 HRLVCGTPAPKDCELYYVDKDALFSYHDLSEGFLQRVMSLYTSAHYKNQPNDLQMLSDAPAHHLFVLLGPKAMDQGEKGHLPDVLVVVQVALEGRISRTSLEASLSRGHRASGDLIPWSLSQQFQDGQFAGLSGARIVRIATHSDVQKMGYGSRAIDLLTRYYEGTLFLGTA-GDGEQSEESS 552
            +R++ GTP P++CELYYVD+D+LFSYH LSE FLQR+MSLY ++HYKNQPNDLQ+LSDAPAHH+FVLLGP+A  QG  G LPDVL VVQVALEG IS+ S+ A LSRG RASGDLIPW+++QQFQD +FAGLSGAR+VRIATH DV  MGYGSRA++LLT+YY+G L  G    D + +E+++
Sbjct:  523 NRIMGGTPHPRECELYYVDRDSLFSYHKLSENFLQRIMSLYVASHYKNQPNDLQLLSDAPAHHIFVLLGPQAEGQGNAGQLPDVLCVVQVALEGEISKESVAAQLSRGQRASGDLIPWTVAQQFQDNEFAGLSGARVVRIATHPDVTGMGYGSRAVELLTKYYQGELANGDVDSDADDAEKAA 705
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46535.11749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4N4_9PHAE1.620e-10391.48RNA cytidine acetyltransferase n=2 Tax=Ectocarpus ... [more]
A0A225UC75_9STRA8.730e-8571.68N-acetyltransferase 10 (Fragment) n=2 Tax=Phytopht... [more]
NAT10_ACHAM4.330e-8468.13RNA cytidine acetyltransferase (Fragment) n=1 Tax=... [more]
A0A7S4D5F4_HETAK7.070e-8269.66Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
K3XCC4_GLOUD7.770e-8075.45RNA cytidine acetyltransferase n=1 Tax=Globisporan... [more]
A0A8K1FEC9_PYTOL5.180e-7975.45Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A835Z409_9STRA7.530e-7972.94RNA cytidine acetyltransferase n=1 Tax=Tribonema m... [more]
A0A5D6Y1L7_9STRA1.260e-7873.65Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A2D4BXV5_PYTIN3.090e-7871.82RNA cytidine acetyltransferase n=1 Tax=Pythium ins... [more]
A0A1V9YCU8_9STRA4.500e-7868.31RNA cytidine acetyltransferase n=4 Tax=Saprolegnia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46535contigH-elongata_contig46535:255..4098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score332.8
Seed ortholog evalue1.1e-88
Seed eggNOG ortholog2880.D7FZ70
Preferred nameNAT10
KEGG koko:K14521
KEGG Pathwayko03008,map03008
GOsGO:0000049,GO:0000154,GO:0000166,GO:0002097,GO:0002101,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005697,GO:0005730,GO:0006139,GO:0006325,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006996,GO:0008033,GO:0008080,GO:0008144,GO:0008150,GO:0008152,GO:0009451,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010556,GO:0010558,GO:0010605,GO:0010639,GO:0016043,GO:0016070,GO:0016072,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0017076,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0022613,GO:0030490,GO:0030496,GO:0030554,GO:0030684,GO:0030686,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032204,GO:0032205,GO:0032210,GO:0032211,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033043,GO:0033044,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0036211,GO:0042254,GO:0042274,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051276,GO:0051391,GO:0051392,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070182,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1904356,GO:1904357,GO:1904812,GO:1990882,GO:1990883,GO:1990884,GO:1990904,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2001251
EggNOG free text desc.tRNA N-acetyltransferase activity
EggNOG OGsCOG1444@1,KOG2036@2759
Ec32 ortholog descriptionHelicase and acetyltransferase (GNAT) domain protein
Ec32 orthologEc-02_002310.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Exons4
Model size609
Cds size609
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46535.11749.1prot_H-elongata_contig46535.11749.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig46535 255..4098 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930770.500527-CDS-H-elongata_contig46535:254..4131622930770.500527-CDS-H-elongata_contig46535:254..413Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46535 255..413 -
1691679562.4034183-CDS-H-elongata_contig46535:254..4131691679562.4034183-CDS-H-elongata_contig46535:254..413Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46535 255..413 -
1622930770.512764-CDS-H-elongata_contig46535:1723..19001622930770.512764-CDS-H-elongata_contig46535:1723..1900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46535 1724..1900 -
1691679562.4162424-CDS-H-elongata_contig46535:1723..19001691679562.4162424-CDS-H-elongata_contig46535:1723..1900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46535 1724..1900 -
1622930770.5257423-CDS-H-elongata_contig46535:2649..28231622930770.5257423-CDS-H-elongata_contig46535:2649..2823Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46535 2650..2823 -
1691679562.4275892-CDS-H-elongata_contig46535:2649..28231691679562.4275892-CDS-H-elongata_contig46535:2649..2823Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46535 2650..2823 -
1622930770.541095-CDS-H-elongata_contig46535:3999..40981622930770.541095-CDS-H-elongata_contig46535:3999..4098Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46535 4000..4098 -
1691679562.4383652-CDS-H-elongata_contig46535:3999..40981691679562.4383652-CDS-H-elongata_contig46535:3999..4098Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46535 4000..4098 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig46535.11749.1

>prot_H-elongata_contig46535.11749.1 ID=prot_H-elongata_contig46535.11749.1|Name=mRNA_H-elongata_contig46535.11749.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=203bp
GHHRLVCGTPAPKDCELYYVDKDALFSYHDLSEGFLQRVMSLYTSAHYKN
QPNDLQMLSDAPAHHLFVLLGPKAMDQGEKGHLPDVLVVVQVALEGRISR
TSLEASLSRGHRASGDLIPWSLSQQFQDGQFAGLSGARIVRIATHSDVQK
MGYGSRAIDLLTRYYEGTLFLGTAGDGEQSEESSGENSEDSSDESSEGEE
EGD
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mRNA from alignment at H-elongata_contig46535:255..4098-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig46535.11749.1 ID=mRNA_H-elongata_contig46535.11749.1|Name=mRNA_H-elongata_contig46535.11749.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3844bp|location=Sequence derived from alignment at H-elongata_contig46535:255..4098- (Himanthalia elongata Himel1 dioecious)
GGGCATCATCGGCTGGTGTGCGGCACCCCCGCGCCGAAGGACTGCGAGCT
GTACTACGTCGACAAGGATGCGCTGTTTTCCTACCACGACCTCTCGGAGG
TGGGTACCGCATAAATACCATATGGGAACTGTATAGCCTTTCTTTTTATG
CTACCGAGAAGCGCACAAGGGCAACGTTGCCTCTTGCTATCGAGTTTTTC
TTCAAAAGAAAAAAGGAGGATGTACATCGTATGATATACTCGTGCGTGCA
TAGCCTTCTAAATGAGTCATACGTCATACAGTAGTAGACTTTATATATAT
ATATATATTTATATATATATATATTTGTAGAATCCGGTTGTTTCGCTGTT
TTTACGTATTCATACTCGTATACGAGATTACGTATGGATTTACGGTACAT
TTACATGAAGTGTGCAGTATGTGTTATGTGAGGTTCTTGCCCCCCCCCCA
TGAATATCTTCATACACAATCGTGACACAACTATCAACGTGTTTTCCCTT
TTCTATTTCTAAATTATCAACCTATCCATGACTAGAGAACCCTTCCCACC
TTCTTTTTTTTTTAATTATTATTTCCGAAATCAACGCCTCGCATCGTGTA
CCGTCCCCTCGTAGAGAAACGCCTGTTCCTGTTGCAACTTCCCCCACCCC
ACCGGATTTGCCTATTTTTAACCCATGGGTTAGAAGTCCGAACCCTAACC
CAAGTACGCATGGTATGGAAATCCCGGGGTAGGACACCTTACTGCCCCCC
CCGAGCAGCCCATGGGTGATTGGTGTGGGTTAAGGGCGGGTTGGGTCAGC
CAGTATATAAATGGTTTCAGAGAAACGGCTATTCTACTCTGCATGAAATC
AACGTTTTTTGCTTTTTTTTTAAATTGAATTCCGGAAGCCATGGGTTAGA
AGTTAGAACCTAACCCAAGCACGCATGGGATGGAAACCCCGGGGTAGGAA
ACCTTACTGTCCTCTCTCCGGAATTCACTTCGAAAAAATAGCGAAAAACG
TTGATTTCATGCAGAGTAGAATTACCGTTTATCTGAAACCATTTTACATA
CTGGCCTCCGAGGGACAGTAACATCCTACCCCGGGGTTTCCATCCCATGC
GTGCTTGGGTTAGGGTTCTAACGTCTAACCCATGGGTTAAAAATAGGCGC
TCCCCACCCCACCCCGCACGCCCCGTCCCCAGCAGACCTCTCTCTCTATA
TATTTCTTACTTATATAATGTATACTATATTGTAGTATATTGTTAATGAA
CTTTTTCAAATGCTCGCACGTGCAGGGATTCCTCCAGCGCGTGATGTCCC
TCTACACCTCGGCCCACTACAAGAACCAGCCGAACGATCTGCAGATGTTG
AGCGACGCCCCTGCCCACCACCTGTTCGTCCTGCTGGGACCCAAGGCCAT
GGATCAGGGGGAGAAGGGCCACCTCCCCGACGTGCTTGTCGTTGTCCAGG
TTAGCCTTTTCTGTTCTCGCCGTCCCGTCTAAAAGAAAGGAAAGGCTTTT
CTTCCTTTCCCTCTATCCCAAAAAAGTACAGGGGTTTACTGAGTGTAAAA
CTCAACACGATAGATATTAACAGTGTGATCGGGAAAGAGCTTGCGGGTAT
TATGGTCTACTGGCAGCCAAGGTGTAAGGGGACGATGGGGACCCCACTCC
GCGCGAAACATGCCTATTCTCGCAAGAATATATGTTCACGTTTCAGTGGC
GTGACGTTCGTCCAAGCGGCGGCATTGATGGCCTGCGGGCTCAAGGGAAC
GGGAGCCTCCGACCCCTATCCCCCCCTTCTCCTCCGAACCCTATATCCAA
ACCCAGGTAACTCGTCTCCGTATTCTCTTTATGAACACCTACACAAAGCA
ATATAATTCATACACCTCCCCCTTCCCCCTCCCCCCCCGTCCGCCTCCTA
ACACTAGTCTCAAACCAATATACTCCCCCCTAGCACTATTCTCAAACCGA
GGTAACTCAACCCCCACCCTTTCCCGATTTCATACTAAAATCAAGATAAT
CCACCACAACCCTCCTATGATATAACCTCCGGGCTGTACTCAAGAACGAG
ATAGACCTAACCCCTGGTCGGGAAGGCTAAGATAGGATAGGTGTGTCTTT
CCGAACGACCGTTTTTCTTTCCGCCCCCCTCTGTTTTTATTTTATTTCCT
CCTCTGCTCCGTCCACCCATCCCCTCCATATATTTATAAAACCCTAAGGT
GGCCCTTGAGGGTCGGATCTCCCGGACTTCGTTGGAGGCGTCCCTGTCGA
GGGGACACCGTGCATCCGGCGACTTGATCCCCTGGAGTCTGAGTCAGCAG
TTCCAGGATGGCCAGTTCGCAGGGCTGTCCGGGGCACGCATCGTGCGTAT
CGCTACCCACTCCGATGTCCAAAAGGTATGTGCGTGCTTTCTTGCGTGTA
TGCGAGAAACAAATCTTTGCTGCTTGCGTCTGTGCGTGCCGCCAACCCCT
CTAGACACAAAACCGTGTGTATATGTCCTTCCTGTTGATAATGTGAAACC
GCCTCTTTCTCTTTCTCTCTCTCTCTCTCCTTCTATCATTGTGTAATAAA
AGAGGTGTACCTCTTGAAGGTAACGATCTCTGTAGTATATAATATATAGC
ATATAAGGTAACGATCTCTGTAGTATATAATATATAGCATATAATATATA
TAAAAGGTATGATCGTACCCTTGACCGTGATATCCTCTCTCTCTCTTTCT
CCAAGGAGGAGAAGGAGGTGCGCTCTTTGTTATGGCGAAACTCTTTATAA
ATCATAGTTACTTTTACCTTGACCGTGAGGCCCTCTATAATCTATAACGG
TTTATGTTTGTGCCTTAACTTTAAAATCCTCTTGAGAACGCCTCCCAGCA
CCGCTTCCGGGGACATACATGTCTCCCCCCCTTCCTCCCTCCCTCAAGAG
CGTTGCCTTCATCTATTCATCTATTTTGAAGATATTTGGATGAGAAAGCA
GAGCATCGTCGCCTGTCCTGTTTAGAAATATACTGGAAAATATTATAGGC
GTGTTTGTTGTTTTTTTGTTCCGCCTTTTTCGTTTTTGTAGCTGGGTACA
GTATATACACAGTATATACACACACCGTAGCGTCAAAAAGAGGCTAGAGC
AAACAAAAAAATATTCTTTTTGTTTTCTATTATACCATTAAATTATATTT
TTGTTTATTTGCTTTTGTTCGTTGAGCTCTGTAGATACTCGCCGCACGAG
CACAGCCTTACAGGAGTGCGGAGTTCGATTATAATGAGGATGTTTGTAGG
GAGGAGTAGAGGGGGTAAGCGAAAGTTGGAGAAATATACAAAGAGAAGCG
GTAGAGTGTGAGCTTGTCTCCCGATTAAAAAAAGAAAAAAAGCTTTTTCG
TTGAATGATTGATGGTAAAATAGTCGATGGTAAAACGGTTGATCGTAAAC
GTTTTGATGGCAAAATGGTTGATGGAGGCGTGAACTCGGGGGGTGGTAGG
GTGGAGTGGGGACATAGACTGATTCGTTCGAAGGATCACCACAGGCTGGC
GGGATGAGCAGCCGCTGCAGTATAGTACAGTACAGTAGTCGTGTGAATAA
TATTAATGCTTATAAAATAGTTAATAGTCTACGTCGGCAGAACATGAGAA
AATATGTATAGGCGGCTCTATACAGCACATGTAAATATTTACCGTTCCAT
TTTTTTCTTCTTTTTTTTCTTCGATGTCTCGGAAGATGGGCTATGGATCT
CGAGCCATCGACCTCCTGACGCGGTACTACGAAGGGACGCTCTTCTTGGG
AACCGCGGGAGACGGCGAACAATCCGAGGAAAGTTCCGGGGAAAATTCCG
AAGATAGCTCCGACGAAAGTTCCGAGGGGGAGGAGGAGGGGGAC
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Coding sequence (CDS) from alignment at H-elongata_contig46535:255..4098-

>mRNA_H-elongata_contig46535.11749.1 ID=mRNA_H-elongata_contig46535.11749.1|Name=mRNA_H-elongata_contig46535.11749.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1218bp|location=Sequence derived from alignment at H-elongata_contig46535:255..4098- (Himanthalia elongata Himel1 dioecious)
GGGCATCATCGGCTGGTGTGCGGCACCCCCGCGCCGAAGGACTGCGAGCT
GTACTACGTCGACAAGGATGCGCTGTTTTCCTACCACGACCTCTCGGAGG
GGCATCATCGGCTGGTGTGCGGCACCCCCGCGCCGAAGGACTGCGAGCTG
TACTACGTCGACAAGGATGCGCTGTTTTCCTACCACGACCTCTCGGAGGG
ATTCCTCCAGCGCGTGATGTCCCTCTACACCTCGGCCCACTACAAGAACC
AGCCGAACGATCTGCAGATGTTGAGCGACGCCCCTGCCCACCACCTGTTC
GTCCTGCTGGGACCCAAGGCCATGGATCAGGGGGAGAAGGGCCACCTCCC
CGACGTGCTTGTCGTTGTCCAGGGATTCCTCCAGCGCGTGATGTCCCTCT
ACACCTCGGCCCACTACAAGAACCAGCCGAACGATCTGCAGATGTTGAGC
GACGCCCCTGCCCACCACCTGTTCGTCCTGCTGGGACCCAAGGCCATGGA
TCAGGGGGAGAAGGGCCACCTCCCCGACGTGCTTGTCGTTGTCCAGGTGG
CCCTTGAGGGTCGGATCTCCCGGACTTCGTTGGAGGCGTCCCTGTCGAGG
GGACACCGTGCATCCGGCGACTTGATCCCCTGGAGTCTGAGTCAGCAGTT
CCAGGATGGCCAGTTCGCAGGGCTGTCCGGGGCACGCATCGTGCGTATCG
CTACCCACTCCGATGTCCAAAAGGTGGCCCTTGAGGGTCGGATCTCCCGG
ACTTCGTTGGAGGCGTCCCTGTCGAGGGGACACCGTGCATCCGGCGACTT
GATCCCCTGGAGTCTGAGTCAGCAGTTCCAGGATGGCCAGTTCGCAGGGC
TGTCCGGGGCACGCATCGTGCGTATCGCTACCCACTCCGATGTCCAAAAG
ATGGGCTATGGATCTCGAGCCATCGACCTCCTGACGCGGTACTACGAAGG
GACGCTCTTCTTGGGAACCGCGGGAGACGGCGAACAATCCGAGGAAAGTT
CCGGGGAAAATTCCGAAGATAGCTCCGACGAAAGTTCCGAGGGGGAGGAG
GAGGGGGACATGGGCTATGGATCTCGAGCCATCGACCTCCTGACGCGGTA
CTACGAAGGGACGCTCTTCTTGGGAACCGCGGGAGACGGCGAACAATCCG
AGGAAAGTTCCGGGGAAAATTCCGAAGATAGCTCCGACGAAAGTTCCGAG
GGGGAGGAGGAGGGGGAC
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