mRNA_H-elongata_contig46527.11747.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig46527.11747.1
Unique NamemRNA_H-elongata_contig46527.11747.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig46527.11747.1 vs. uniprot
Match: A0A6H5JDT4_9PHAE (MULE domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDT4_9PHAE)

HSP 1 Score: 273 bits (699), Expect = 3.870e-83
Identity = 137/253 (54.15%), Postives = 184/253 (72.73%), Query Frame = 1
Query:    1 YKHHLALIVVVDKENHTQIAMQALLSHERTENFLFLFEMFTELCAGAHPQVIFTDADQAETSAIAQTYPSSLHKFCLYHIHENIRKHGRGLGEGVLAAVQQKFNAAAYAPTEDMFLQYKAEALRLLTPDSHIYEYMDKNMFDPGRVQKWAAHVQPRLHTLSIASTQRVESTNSALKRVMTRSGNMIDVDNAIVGHVQDDANKTARRTEGGRVDRVRVSNNMSSAQRVQAHLLDNFRFVEQAMLHEQCSAYAME 759
            Y H LA IVVVDKENHTQIAMQALL  ER E+F+FL E F EL  G+ P+VIFTD DQ+E SAIAQ +P +L+K C +H  +N++ HG+GL  G+L  + +KF AAAYAPT + F++ K E L +L P+S +Y+YM   +F+PGR  KWA+ V P LHTL IASTQRVE TN A+K+++TR+G++ D++ A++G VQDDA +T RR+E G   RV +S NMS A+ V+ +L   F F+  A+ HE+CS +A E
Sbjct:  141 YNHKLAFIVVVDKENHTQIAMQALLDTERHESFVFLMESFKELIRGSSPKVIFTDTDQSEMSAIAQVFPGALNKLCYWHKEQNVKAHGKGLPGGILQGILRKFKAAAYAPTLEAFVEIKTELLSMLDPESGVYKYMLGEIFNPGRAGKWASFVHPGLHTLGIASTQRVEGTNCAVKKLVTRTGDLADLERALLGKVQDDAIRTQRRSEVGNTKRVSLSRNMSPAENVKQNLRGYFAFITAALTHERCSTHAKE 393          
BLAST of mRNA_H-elongata_contig46527.11747.1 vs. uniprot
Match: A0A6H5JXK5_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK5_9PHAE)

HSP 1 Score: 276 bits (706), Expect = 8.600e-83
Identity = 143/253 (56.52%), Postives = 183/253 (72.33%), Query Frame = 1
Query:    1 YKHHLALIVVVDKENHTQIAMQALLSHERTENFLFLFEMFTELCAGAHPQVIFTDADQAETSAIAQTYPSSLHKFCLYHIHENIRKHGRGLGEGVLAAVQQKFNAAAYAPTEDMFLQYKAEALRLLTPDSHIYEYMDKNMFDPGRVQKWAAHVQPRLHTLSIASTQRVESTNSALKRVMTRSGNMIDVDNAIVGHVQDDANKTARRTEGGRVDRVRVSNNMSSAQRVQAHLLDNFRFVEQAMLHEQCSAYAME 759
            YK  LALIVVVDKENHTQIAMQALL++ER+E+F F+FE F ELC G  P V+FTD D A   AIA  YPS+L+K C++H  ENIR HGRGL EGVL AV  KF AAAYA T++ FLQ + E L +L P+SH+Y+YM  N+F   R  KWA++V P LHTL IASTQRVES N+A+K V+TR G+M+D+++ I+  VQD   KT RR+ GG+V++V +    S+  RV    +D FRF+  A+ HE+ S +AME
Sbjct:  356 YKFFLALIVVVDKENHTQIAMQALLANERSESFEFIFESFKELCGGGSPGVVFTDCDSAAMLAIANVYPSALNKLCIWHTMENIRDHGRGLAEGVLPAVLGKFKAAAYAQTQEYFLQLRGEILDMLPPESHMYKYMAVNIFGAERAGKWASYVHPGLHTLGIASTQRVESMNAAVKAVVTRKGSMMDLNDGIMAKVQDGMAKTERRSTGGKVNKVSMRQAKSAMSRVTTSHVDQFRFILDALAHEKSSTHAME 608          
BLAST of mRNA_H-elongata_contig46527.11747.1 vs. uniprot
Match: A0A6H5JB23_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB23_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 6.720e-80
Identity = 136/253 (53.75%), Postives = 185/253 (73.12%), Query Frame = 1
Query:    1 YKHHLALIVVVDKENHTQIAMQALLSHERTENFLFLFEMFTELCAGAHPQVIFTDADQAETSAIAQTYPSSLHKFCLYHIHENIRKHGRGLGEGVLAAVQQKFNAAAYAPTEDMFLQYKAEALRLLTPDSHIYEYMDKNMFDPGRVQKWAAHVQPRLHTLSIASTQRVESTNSALKRVMTRSGNMIDVDNAIVGHVQDDANKTARRTEGGRVDRVRVSNNMSSAQRVQAHLLDNFRFVEQAMLHEQCSAYAME 759
            YK  LAL+VVVD ENH+QI MQALLS+ER E+F F++E   ELC G  P+V F+D D AET+AI   +P ++HK C++H + NIR+HG GLGEGVL+ V +KF  AA+A T + FLQ K E L  L  +S +Y YM  N+F  GRV+KWA+ V P LHTL I STQRVE+ NSA+KR++TRSG M++++ A++G VQDDANKT R+++GGR+ R  +S+ MSS + V+  LL +F FV  A+ HE+ S +A++
Sbjct:  265 YKFSLALVVVVDHENHSQIVMQALLSNERQESFQFVYESLKELCEGGSPKVCFSDNDAAETNAIELVFPGTVHKLCIWHTYGNIREHGGGLGEGVLSEVIRKFRKAAFAQTVEYFLQAKTELLAFLPRESKMYNYMANNIFGKGRVEKWASCVHPGLHTLGICSTQRVEAMNSAVKRLVTRSGTMVELNRALMGKVQDDANKTKRKSDGGRLPRAPLSS-MSSMENVKRGLLKHFSFVVDAVKHERSSTHAIK 516          
BLAST of mRNA_H-elongata_contig46527.11747.1 vs. uniprot
Match: D7G8C7_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C7_ECTSI)

HSP 1 Score: 258 bits (659), Expect = 1.640e-78
Identity = 144/276 (52.17%), Postives = 182/276 (65.94%), Query Frame = 1
Query:    1 YKHHLALIVVVDKENHTQIAMQALLSHERTENFLFLFEMFTELCAGAHPQVIFTDADQAETSAIAQTYPSSLHKFCLYHIHENIRKHGRGLGEGVLAAVQQKFNAAAYAPTEDMFLQYKAEALRLLTPDSHIYEYMDKNMFDPG-----------------------RVQKWAAHVQPRLHTLSIASTQRVESTNSALKRVMTRSGNMIDVDNAIVGHVQDDANKTARRTEGGRVDRVRVSNNMSSAQRVQAHLLDNFRFVEQAMLHEQCSAYAME 759
            YK HLALIVVVDKENH+QIAMQALLS ER+E+F F+FE F +LC G  P+V+FTD D A   AIA+ YPS+L+K C++H   NIR+HG GL +GVL  V Q F AAAYA TE+ FLQ K   L LL P+S +YEYM+KN+F  G                       R  KWA++V P LHTL IASTQRVES N+A+K+++TR G+M+D+  A++G VQDD N+T RR  GG V RV V  + S  +  +   L  F FV  A+ +EQCS +A E
Sbjct:   80 YKFHLALIVVVDKENHSQIAMQALLSDERSESFEFVFESFKQLCEGGTPEVVFTDCDAAAMLAIAKVYPSALNKLCIWHTMGNIREHGGGLEKGVLGQVLQLFKAAAYAQTEEYFLQCKGALLDLLPPESKMYEYMEKNIFGTGFRQLVTSSVSCPLSLSRPVTCDRRAGKWASYVHPGLHTLGIASTQRVESMNAAVKKLVTRKGDMVDLGRALLGKVQDDINRTQRRNLGGTVARVAVQGH-SYVESFRTKHLRTFNFVLNAVKYEQCSQHATE 354          
BLAST of mRNA_H-elongata_contig46527.11747.1 vs. uniprot
Match: A0A6H5KQ14_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ14_9PHAE)

HSP 1 Score: 255 bits (651), Expect = 2.220e-78
Identity = 136/253 (53.75%), Postives = 181/253 (71.54%), Query Frame = 1
Query:    1 YKHHLALIVVVDKENHTQIAMQALLSHERTENFLFLFEMFTELCAGAHPQVIFTDADQAETSAIAQTYPSSLHKFCLYHIHENIRKHGRGLGEGVLAAVQQKFNAAAYAPTEDMFLQYKAEALRLLTPDSHIYEYMDKNMFDPGRVQKWAAHVQPRLHTLSIASTQRVESTNSALKRVMTRSGNMIDVDNAIVGHVQDDANKTARRTEGGRVDRVRVSNNMSSAQRVQAHLLDNFRFVEQAMLHEQCSAYAME 759
            YK  LALIVVVD EN+TQIAMQALLS+ER+E+F+FL E F ELC G  PQV FTD DQ    AIA+ +P +L+K C+++  +NIRKHG+GL +G L +V Q F AAA+A   + F++YK E  RLL  +S +++YM+  +F  GRV+KWA+ V P LH L IASTQR E+T +ALK V+TR+GNM+D++ A++  VQDDA KT  R +GG V RV V   +S  + V+A  L +F FV +AM HE+CS +A E
Sbjct:   43 YKFFLALIVVVDMENYTQIAMQALLSNERSEDFIFLMETFKELCGGLMPQVAFTDCDQGAMGAIAEVFPGALNKLCIWYAMQNIRKHGKGLADGALQSVLQNFKAAAFAARVEDFVRYKTELPRLLPQESAMHKYMEGTIFGAGRVEKWASCVHPGLHKLGIASTQRCEATFTALKLVVTRNGNMVDLNRALLSKVQDDAIKTQSRNKGGAVTRVPVRK-VSPQESVKASFLRHFSFVFEAMEHERCSRHAKE 294          
BLAST of mRNA_H-elongata_contig46527.11747.1 vs. uniprot
Match: A0A6H5K1S8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S8_9PHAE)

HSP 1 Score: 233 bits (594), Expect = 1.580e-68
Identity = 128/233 (54.94%), Postives = 158/233 (67.81%), Query Frame = 1
Query:   61 MQALLSHERTENFLFLFEMFTELCAGAHPQVIFTDADQAETSAIAQTYPSSLHKFCLYHIHENIRKHGRGLGEGVLAAVQQKFNAAAYAPTEDMFLQYKAEALRLLTPDSHIYEYMDKNMFDPGRVQKWAAHVQPRLHTLSIASTQRVESTNSALKRVMTRSGNMIDVDNAIVGHVQDDANKTARRTEGGRVDRVRVSNNMSSAQRVQAHLLDNFRFVEQAMLHEQCSAYAME 759
            MQALLS ERTE+F FLF  F  L  GA P+VIFTD D A  + I +  P+S  K C++H+ EN+RKHG+GLGEGVLAAV   F+ AAY+ TE+MFLQ K E  +LL P  H+Y Y+ + +F P  VQ+WA +V P L TL I+STQRVESTN ALK  MTR+G M+DV  AI G V DD NKT  +T GG + RVRV    SS   V+   L +F+FV   MLH  CSA+AM+
Sbjct:    1 MQALLSSERTEDFEFLFREFRSLIGGAQPEVIFTDNDAAAMAGIEKESPASRGKVCVFHMDENLRKHGKGLGEGVLAAVIGLFHKAAYSQTEEMFLQRKEELFKLLDPGRHMYTYITECVFSPKWVQRWAKYVHPGLPTLGISSTQRVESTNGALKPAMTRTGTMVDVHRAISGKVSDDVNKTKTQTTGGPIQRVRVPT-QSSFGDVRDSWLADFKFVHDGMLHAGCSAFAMK 232          
BLAST of mRNA_H-elongata_contig46527.11747.1 vs. uniprot
Match: A0A6H5KJW1_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW1_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 9.730e-67
Identity = 112/188 (59.57%), Postives = 140/188 (74.47%), Query Frame = 1
Query:    1 YKHHLALIVVVDKENHTQIAMQALLSHERTENFLFLFEMFTELCAGAHPQVIFTDADQAETSAIAQTYPSSLHKFCLYHIHENIRKHGRGLGEGVLAAVQQKFNAAAYAPTEDMFLQYKAEALRLLTPDSHIYEYMDKNMFDPGRVQKWAAHVQPRLHTLSIASTQRVESTNSALKRVMTRSGNMIDV 564
            YK+HLALIVVVDKEN+TQIAMQALL++ERTE+F FLF +F ELC G  P+   T        AI +  P+S  K CL+H+ EN+ KHG GL +GVLA V+  F+AAAYA TE+MFL++KA   + L PDSH+Y+YM   +F+P RVQ+WA+ V P LHTL+I STQRVESTN ALK  M RSG+M+DV
Sbjct:  147 YKYHLALIVVVDKENYTQIAMQALLANERTEDFKFLFRVFRELCEGVQPEAAMT--------AIDEECPASHQKLCLFHMDENLMKHGEGLEQGVLAGVKGMFHAAAYAHTEEMFLKHKANLFKQLKPDSHMYKYMADFVFEPRRVQRWASFVHPGLHTLNIVSTQRVESTNGALKTAMHRSGSMVDV 326          
BLAST of mRNA_H-elongata_contig46527.11747.1 vs. uniprot
Match: A0A6H5JIP1_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIP1_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 1.030e-65
Identity = 107/216 (49.54%), Postives = 146/216 (67.59%), Query Frame = 1
Query:  112 EMFTELCAGAHPQVIFTDADQAETSAIAQTYPSSLHKFCLYHIHENIRKHGRGLGEGVLAAVQQKFNAAAYAPTEDMFLQYKAEALRLLTPDSHIYEYMDKNMFDPGRVQKWAAHVQPRLHTLSIASTQRVESTNSALKRVMTRSGNMIDVDNAIVGHVQDDANKTARRTEGGRVDRVRVSNNMSSAQRVQAHLLDNFRFVEQAMLHEQCSAYAME 759
            E F +L  G+ PQVIFTD DQ+E SAIAQ +P +L+K C +H  +N+++HG+GL + V+  V +KF AAAYAPT   F + K E L +L P+S +Y+YM  ++F PGR  +WAA V P LHTL IASTQRVES N A K+++TR+G++ D+D AIVG V D   K  RR+EGG   RV +S + S A+ ++  +   F F+  AM HE+CS  A E
Sbjct:    2 ESFKKLIRGSSPQVIFTDTDQSEMSAIAQVFPGALNKLCYWHTEQNVKEHGKGLPQAVIQGVLRKFKAAAYAPTVGTFFEAKTELLAMLDPESRMYKYMAGDIFSPGRAGRWAAFVHPGLHTLGIASTQRVESMNCAFKKLVTRTGDLFDLDRAIVGKVSDGKIKAERRSEGGNTPRVPISRHKSPAEVMKEKIRGYFSFIPAAMAHERCSTNAKE 217          
BLAST of mRNA_H-elongata_contig46527.11747.1 vs. uniprot
Match: A0A6H5JZ35_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ35_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 1.340e-63
Identity = 110/205 (53.66%), Postives = 144/205 (70.24%), Query Frame = 1
Query:    1 YKHHLALIVVVDKENHTQIAMQALLSHERTENFLFLFEMFTELCAGAHPQVIFTDADQAETSAIAQTYPSSLHKFCLYHIHENIRKHGRGLGEGVLAAVQQKFNAAAYAPTEDMFLQYKAEALRLLTPDSHIYEYMDKNMFDPGRVQKWAAHVQPRLHTLSIASTQRVESTNSALKRVMTRSGNMIDVDNAIVGHVQDDANKTAR 615
            Y H LA IVVVDKEN TQ AMQALL  ER E+FL L E F +L  G+ P+VIFTD  Q+E SAIAQ +P +L+K C +H+ +N+++HG+GL EGV+  V +KF AAA+APT    ++ K E L +L P+S + +Y   ++F PGR  +WAA V P LHTL IASTQRVES N A K+++TR+G++ D+D AIVG V D   K  R
Sbjct:  201 YNHKLAFIVVVDKENLTQNAMQALLETERHESFLSLMESFKKLIRGSSPRVIFTDTGQSEMSAIAQVFPGALNKLCYWHMEQNVKEHGKGLPEGVIQGVLRKFKAAAFAPTVGALVEAKTELLAMLDPESTMNKYTAGDIFSPGRAGRWAAFVHPGLHTLGIASTQRVESMNCAFKKLVTRTGDLFDLDRAIVGKVSDGKIKAER 405          
BLAST of mRNA_H-elongata_contig46527.11747.1 vs. uniprot
Match: A0A6H5K2Y1_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Y1_9PHAE)

HSP 1 Score: 219 bits (559), Expect = 1.900e-62
Identity = 119/203 (58.62%), Postives = 141/203 (69.46%), Query Frame = 1
Query:    1 YKHHLALIVVVDKENHTQIAMQALLSHERTENFLFLFEMFTELCAGAHPQVIFTDADQAETSAIAQTYPSSLHKFCLYHIHENIRKHGRGLGEGVLAAVQQKFNAAAYAPTEDMFLQYKAEALRLLTPDSHIYEYMDKNMFDPGRVQKWAAHVQPRLHTLSIASTQRVESTNSALKRVMTRSGNMIDVDNAIVGHVQDDANKT 609
            YK+HLALIVVVDKEN+T I  QALL+ ERTE+F FLF  F E+  GA PQVIFTDAD A  +AI +  P S H+ CL+H+ EN+RKHG+GLGEGVLA V + F+ AA+APTE+     K +   LL P S +Y YM  ++F P  V +WA    P L TL I STQRVESTNSALK  M RSG M+DV  AI   VQ DANKT
Sbjct:  225 YKYHLALIVVVDKENYTHIVFQALLASERTEDFDFLFRAFREMIGGAQPQVIFTDADAAAMAAIQKECPWSRHQLCLFHLDENLRKHGKGLGEGVLAGVIRMFHKAAFAPTEEA----KQDVFNLLAPGSDMYTYMADSVFGPKWVHRWAKFGHPGLPTLGITSTQRVESTNSALKPAMQRSGTMVDVHRAISKKVQSDANKT 423          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46527.11747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JDT4_9PHAE3.870e-8354.15MULE domain-containing protein n=3 Tax=Ectocarpus ... [more]
A0A6H5JXK5_9PHAE8.600e-8356.52SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JB23_9PHAE6.720e-8053.75MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G8C7_ECTSI1.640e-7852.17Putative far-red impaired response protein n=1 Tax... [more]
A0A6H5KQ14_9PHAE2.220e-7853.75SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K1S8_9PHAE1.580e-6854.94SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KJW1_9PHAE9.730e-6759.57MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JIP1_9PHAE1.030e-6549.54MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JZ35_9PHAE1.340e-6353.66MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K2Y1_9PHAE1.900e-6258.62SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46527contigH-elongata_contig46527:1882..3689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue4.3e-13
Seed eggNOG ortholog2880.D7FLF6
EggNOG OGs2CMGX@1,2QQB8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size759
Cds size759
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46527.11747.1prot_H-elongata_contig46527.11747.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig46527 1882..3689 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930770.231035-CDS-H-elongata_contig46527:1881..20261622930770.231035-CDS-H-elongata_contig46527:1881..2026Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46527 1882..2026 -
1691679562.308756-CDS-H-elongata_contig46527:1881..20261691679562.308756-CDS-H-elongata_contig46527:1881..2026Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46527 1882..2026 -
1622930770.2486327-CDS-H-elongata_contig46527:2518..27011622930770.2486327-CDS-H-elongata_contig46527:2518..2701Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46527 2519..2701 -
1691679562.3196068-CDS-H-elongata_contig46527:2518..27011691679562.3196068-CDS-H-elongata_contig46527:2518..2701Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46527 2519..2701 -
1622930770.2669597-CDS-H-elongata_contig46527:2836..29281622930770.2669597-CDS-H-elongata_contig46527:2836..2928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46527 2837..2928 -
1691679562.3289165-CDS-H-elongata_contig46527:2836..29281691679562.3289165-CDS-H-elongata_contig46527:2836..2928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46527 2837..2928 -
1622930770.2848792-CDS-H-elongata_contig46527:3130..33191622930770.2848792-CDS-H-elongata_contig46527:3130..3319Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46527 3131..3319 -
1691679562.340823-CDS-H-elongata_contig46527:3130..33191691679562.340823-CDS-H-elongata_contig46527:3130..3319Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46527 3131..3319 -
1622930770.3027952-CDS-H-elongata_contig46527:3539..36891622930770.3027952-CDS-H-elongata_contig46527:3539..3689Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46527 3540..3689 -
1691679562.3496466-CDS-H-elongata_contig46527:3539..36891691679562.3496466-CDS-H-elongata_contig46527:3539..3689Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46527 3540..3689 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig46527.11747.1

>prot_H-elongata_contig46527.11747.1 ID=prot_H-elongata_contig46527.11747.1|Name=mRNA_H-elongata_contig46527.11747.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=253bp
YKHHLALIVVVDKENHTQIAMQALLSHERTENFLFLFEMFTELCAGAHPQ
VIFTDADQAETSAIAQTYPSSLHKFCLYHIHENIRKHGRGLGEGVLAAVQ
QKFNAAAYAPTEDMFLQYKAEALRLLTPDSHIYEYMDKNMFDPGRVQKWA
AHVQPRLHTLSIASTQRVESTNSALKRVMTRSGNMIDVDNAIVGHVQDDA
NKTARRTEGGRVDRVRVSNNMSSAQRVQAHLLDNFRFVEQAMLHEQCSAY
AME
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mRNA from alignment at H-elongata_contig46527:1882..3689-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig46527.11747.1 ID=mRNA_H-elongata_contig46527.11747.1|Name=mRNA_H-elongata_contig46527.11747.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1808bp|location=Sequence derived from alignment at H-elongata_contig46527:1882..3689- (Himanthalia elongata Himel1 dioecious)
TACAAACACCACCTCGCGTTGATCGTGGTGGTGGACAAGGAGAACCATAC CCAGATCGCAATGCAGGCTTTGCTTTCCCATGAGCGGACGGAAAACTTTC TCTTCCTCTTTGAGATGTTCACGGAGCTGTGCGCTGGAGCGCACCCACAG GTAAATGAACCTTCCGTTTGCAGCGCATATGTACCGACAGAAACAGCTGC AAAAAACATGGGAATATTGGTGCACATCACCCGTGTGCAGACCTCATTTC CCTATCGAACACCGGAAATAGGTGTCTTGAGTATACCTTGACCCCGCATG GACGTGTTTTTTAAGTACGCCCCACCTTCCGTCCCTCGTCGTGTCCATAA TCTGCGCCGGGGCGATCCAGGTGATCTTCACCGACGCTGACCAGGCAGAA ACTTCGGCAATCGCCCAAACCTACCCTTCATCGCTGCACAAGTTTTGCCT GTACCACATCCATGAGAACATCCGGAAACATGGTCGAGGTCTTGGAGAGG GTGTCCTGGCAGCAGTCCAGCAGAAGTTCAACGCAGCAGCATACGCTCCA ACTGAGGACGTGAGTACCGTAGGGCCCCTAAGAAATCATACACCCCTTAG ATATCACACCCCCTTATAACGCCTACATGAAACCACACCCGGGTGATACT TTTTTGAAATCGAAACTCGATGATTTAACCGCCCAGTTCCCCCGTCCCCA TTTCCTACCGGTCGTATTCTCCTATCCCCTTGACTGCTCTGCCCAATTGT TGAATTCACAGATGTTCCTTCAGTACAAAGCGGAGGCCCTTCGGCTCTTG ACCCCGGACAGCCACATATACGAGTACATGGACAAGAACATGTTCGACCC GGGGTAAGCACCGTCGTGGAGTGAGCGCATTCTAGCTGAACTTCGACGAG GCATCTGCTACTGTTGGCCCCCGTGAACTCATGCCGCCATGCCTTTACTG TGACTACTGACCTTGACCCTTTTCGTCTTGTGTAACAGGCGGGTACAGAA GTGGGCCGCACATGTTCAACCCAGGCTCCACACCCTCAGCATTGCCTCCA CGCAGCGAGTGGAGTCGACGAACAGCGCATTGAAGCGGGTAATGACCAGG TCGGGGAATATGATCGACGTCGACAACGCCATCGTAGGCCATGTCCAGGA TGACGCCAACAAAACAGCCAGGTAGGCGCTCGTTAAATTGACGTGTATAG TTGAAAGCCCTCTGCCTCAGCTTGTGGAAGATCAGCAGTAGCACACGCCC CACATGCCACGGATCACCAGCACGTCCCAGCCTATATCTGTTGGGTAATT GTGTTCTGACTAAGTGCTTAGAAAGAGACAGGCAACTCACCAGCCTGCGC CCCGGAGGTCGTCTGTCCACAGCAACGAGTATTTAGAAATTTCGCCCTGT TTTAATTATCCCGCGGCGCCTGAAATGGTTAGATCGGTCGATGACAATTG CGGAATCGCGTCAACACAACGCACTCACCAAGTCCTTTCCCACGCGGTCC AAACCCTACCTCTCTACACAGAGCAAAAATCAATGGAAAAAAATACGTAT GGTTTTCGATTCCACCACCACGATCATCACGTCATGCCGTACGACGCCCA CTCTCGTTCGAACAACACGCCTCATTTACCCACGTGCTTTGCGCTTGGCC GGGCTGTATTAAGGCGGACGGAGGGAGGGCGTGTCGACCGCGTGCGTGTC AGCAACAACATGTCGTCCGCGCAGAGGGTGCAGGCCCATTTGCTCGATAA TTTCCGATTTGTGGAGCAGGCTATGCTGCACGAGCAATGCAGCGCGTACG CCATGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig46527:1882..3689-

>mRNA_H-elongata_contig46527.11747.1 ID=mRNA_H-elongata_contig46527.11747.1|Name=mRNA_H-elongata_contig46527.11747.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1518bp|location=Sequence derived from alignment at H-elongata_contig46527:1882..3689- (Himanthalia elongata Himel1 dioecious)
TACAAACACCACCTCGCGTTGATCGTGGTGGTGGACAAGGAGAACCATAC
CCAGATCGCAATGCAGGCTTTGCTTTCCCATGAGCGGACGGAAAACTTTC
TCTTCCTCTTTGAGATGTTCACGGAGCTGTGCGCTGGAGCGCACCCACAG
TACAAACACCACCTCGCGTTGATCGTGGTGGTGGACAAGGAGAACCATAC
CCAGATCGCAATGCAGGCTTTGCTTTCCCATGAGCGGACGGAAAACTTTC
TCTTCCTCTTTGAGATGTTCACGGAGCTGTGCGCTGGAGCGCACCCACAG
GTGATCTTCACCGACGCTGACCAGGCAGAAACTTCGGCAATCGCCCAAAC
CTACCCTTCATCGCTGCACAAGTTTTGCCTGTACCACATCCATGAGAACA
TCCGGAAACATGGTCGAGGTCTTGGAGAGGGTGTCCTGGCAGCAGTCCAG
CAGAAGTTCAACGCAGCAGCATACGCTCCAACTGAGGACGTGATCTTCAC
CGACGCTGACCAGGCAGAAACTTCGGCAATCGCCCAAACCTACCCTTCAT
CGCTGCACAAGTTTTGCCTGTACCACATCCATGAGAACATCCGGAAACAT
GGTCGAGGTCTTGGAGAGGGTGTCCTGGCAGCAGTCCAGCAGAAGTTCAA
CGCAGCAGCATACGCTCCAACTGAGGACATGTTCCTTCAGTACAAAGCGG
AGGCCCTTCGGCTCTTGACCCCGGACAGCCACATATACGAGTACATGGAC
AAGAACATGTTCGACCCGGGATGTTCCTTCAGTACAAAGCGGAGGCCCTT
CGGCTCTTGACCCCGGACAGCCACATATACGAGTACATGGACAAGAACAT
GTTCGACCCGGGGCGGGTACAGAAGTGGGCCGCACATGTTCAACCCAGGC
TCCACACCCTCAGCATTGCCTCCACGCAGCGAGTGGAGTCGACGAACAGC
GCATTGAAGCGGGTAATGACCAGGTCGGGGAATATGATCGACGTCGACAA
CGCCATCGTAGGCCATGTCCAGGATGACGCCAACAAAACAGCCAGGCGGG
TACAGAAGTGGGCCGCACATGTTCAACCCAGGCTCCACACCCTCAGCATT
GCCTCCACGCAGCGAGTGGAGTCGACGAACAGCGCATTGAAGCGGGTAAT
GACCAGGTCGGGGAATATGATCGACGTCGACAACGCCATCGTAGGCCATG
TCCAGGATGACGCCAACAAAACAGCCAGGCGGACGGAGGGAGGGCGTGTC
GACCGCGTGCGTGTCAGCAACAACATGTCGTCCGCGCAGAGGGTGCAGGC
CCATTTGCTCGATAATTTCCGATTTGTGGAGCAGGCTATGCTGCACGAGC
AATGCAGCGCGTACGCCATGGAGGCGGACGGAGGGAGGGCGTGTCGACCG
CGTGCGTGTCAGCAACAACATGTCGTCCGCGCAGAGGGTGCAGGCCCATT
TGCTCGATAATTTCCGATTTGTGGAGCAGGCTATGCTGCACGAGCAATGC
AGCGCGTACGCCATGGAG
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