mRNA_H-elongata_contig4648.11743.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig4648.11743.1 vs. uniprot
Match: D8LTY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTY5_ECTSI) HSP 1 Score: 237 bits (604), Expect = 6.090e-66 Identity = 230/668 (34.43%), Postives = 288/668 (43.11%), Query Frame = 1
Query: 1 GVRVREPHSHSIWREPD--SEIVRQGEREG-IPLRVALKGERTDNFSLSVESCFV-GDNSHRAGCTTAGVSAAGDVRSFWSP---VVLDLSTGKAKGSISVLSSCKARKVRVAAVNAGEEIVGVKSTEAATGMKRAANGSGG------GEDN-------------EEIYLLIAFTPEWTARFNRPILPLESLLLRVVGSYVEYPP----ACGENEGNASRCCQPLKNMRGHARRRESWAARDYSYNVRRLLFAV--------HDCYPR--RGSKGSITNSGPQWALGEAHIDSAAVPATVEPEIGREPKSERNPGKVGQQCSAREI---LELVPSSRLLSESAKEQLTTAPAAYTSSTRSGINYKRTN-LSSISNPCPEASG---------ANGIIELSVVESADLGGYFGTVWDCSLALGAFVASLGPRSMEGKRVVELGAGCGVVSAVCATLGAKEVVATDTNDLLPLLRLNMERIQRRHKGCRSVEVEEYTWGSPTRDRQALARG-RFDVIICSDLF--------------------------------------------CSSVIYLAHRTRNVQEREFFSSLEG---------------------------FRCRKEVFVGEGVSEREDTGHCTNIEGEDFWNQTRWQRGCFPDVLLYELTPI 1629
GVRV+ PHS+ +W EP S R G G +PLRV L+GER F L V S GD G S+ D +P + LDLSTG A G ++VL S + + R E+ V + A GE+N E+ L I+ +P W RFNRP+LPLESL + V PP A G A+ P + G ++R + R + NVRRL F V D R R + NSG ++ EA ATVE + ++ G C I L PS S+ L+++P ++ T+ LSS NGIIE+ ESA LGG+FGTVWDCSL +GAF+A+LGP S+EGKRVVELGA G +SA+CA LGA EVVATDT DLLPLL N+ R G +VE EY WGSP AL+RG FDV+ICSDL +V+YLAHRTRN QE EFF +L G FRCR+ EGV D G C EG W+ GCFPDV LYEL+P+
Sbjct: 54 GVRVQHPHSYHVWAEPQPSSSSARDGLATGAVPLRVTLEGERASRFLLDVSSSIEEGDGVGGGGADRHDDSSHADQGRQCAPFKGLTLDLSTGTAHGWVAVLPSSRPTEPRTPPDLDHEDSTPVCACPAVAAQXXXXXXXXXXXXXXXGEENGCKPEGEEGVVAGAEVQLSISLSPAWARRFNRPVLPLESL-----PALVHSPPYHVAAVGATPTVATPT-PPTGRLEGEGQKR-AVIGRSGACNVRRLRFEVGVARGGGDRDTGRRTIREEEKREENSGSKFTANEAEG------ATVEDSHLAGAPARKHKG----DCCGGPINISLPPPPSPPTTPASSWPSLSSSPVGNAATVSGSDGDGATSGLSSCXXXXXXXXXXXXXXXXERGNGIIEVCAAESASLGGFFGTVWDCSLKMGAFLAALGPASLEGKRVVELGAATGTLSALCAALGASEVVATDTKDLLPLLTFNLARNS--CPGSLNVEACEYDWGSPVGHHPALSRGVGFDVVICSDLLYDPAGWEPLLESLRQLLAAAGGRQRQPARGRGAXXXXXSPTPPSAPAVVYLAHRTRNPQESEFFDALLGQEGGRGPAAEASRRGGPPEGGEEGVLSFRCRR--LSEEGVGGCHDEG-CRGGEG------LVWRGGCFPDVALYELSPV 693
BLAST of mRNA_H-elongata_contig4648.11743.1 vs. uniprot
Match: A0A6H5JS56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS56_9PHAE) HSP 1 Score: 215 bits (547), Expect = 4.240e-58 Identity = 219/677 (32.35%), Postives = 279/677 (41.21%), Query Frame = 1
Query: 4 VRVREPHSHSIWREPD--SEIVRQGEREGI-PLRVALKGERTDNFSLSVESCFVGDNSHRAG--CTTAGVSAAGDVRSFWSP----------VVLDLSTGKAKGSISVLSSCKARKVRVAAVNAGEEIVGVKSTEAATGMKRAA-------------------NGSGGGEDNEEIYLLIAFTPEWTARFNRPILPLESLLLRVVGSYVEYPPACGENEGNASRCCQPLKNMRGHARRRESWAARDYSYNVRRLLFAVHDCYPRRGSKGSITNSGP------QWALGEAHIDSAAVPATVEPEIGREPKSERNPGKVGQQCSAREI-LELVPSSRLLSESAKEQLTTAPAAYTSSTRSGINYKRTN--LSSISNPCP--------------------EASGANGIIELSVVESADLGGYFGTVWDCSLALGAFVASLGPRSMEGKRVVELGAGCGVVSAVCATLGAKEVVATDTNDLLPLLRLNMERIQRRHKGCRSVEVEEYTWGSPTRDRQALARGR-FDVIICSDLFCS--------------------------------------------SVIYLAHRTRNVQEREFFSSLEG---------------------------FRCRKEVFVGEGVSEREDTGHCTNIEGEDFWNQTRWQRGCFPDVLLYELTPI 1629
+ + PHSH +W EP+ S G G+ PLRV L+GER + F L V S AG C AG A V S + + LDLSTG A G ++VL + + + R ++ V + A G G E+ L I+ +P W RFNRP+LPLESL V + A G A+ P + G +RR RD + NVRRL F V R G P + G + A ATVE E S ++ G G R L PS ++ L+++P + SG + LSS S + N I+E+ ESA LGG+FGTVWDCSL +GAF+A+LGP S+EGKRVVELGA G +SA+CA LGA EVVATDT DLLPLL N+ R G +VE EY WGSP AL++G FDV++CSDL +V+YLAHRTRN QE EFF L G FRCR+ E V D G C EG W+ GCFPD+ LYEL+P+
Sbjct: 1 MNIPHPHSHHVWAEPEPSSSSAHDGLAAGVVPLRVTLEGERANRFLLDVSSSIEEGECVGAGGSCGEAGGGADRHVDSSHADQGRQCAPSKGLTLDLSTGMAHGWVAVLPASRPTEPRTPPDLDHDDSTPVCACPAVAAXXXXXXXXXXXXXXXXGEENGCEPEGEDGVVAGAEVQLSISLSPAWVRRFNRPVLPLESLPA-FVHDPAYHVAAVGATPTVATPT-PPTGRLEGEGQRRAVIGRRD-ACNVRRLRFEVG--VARGGGDRDTGRRTPGEEERREEKSGSKFTPNEAEGATVEDSHLAEAPSRKHKG--GYCRGPRNTSLPPPPSPPATPAWSRPSLSSSPVG-NAPAMSGSEWDGATGGLSSCSAXXXXXXXXXXXXXXXXXXXXXXNDDKHGNKIVEVCAAESASLGGFFGTVWDCSLKMGAFLAALGPGSLEGKRVVELGAATGTLSALCAALGASEVVATDTKDLLPLLTFNLARNS--CPGSVNVEACEYDWGSPVGHHLALSQGGGFDVVLCSDLLYDPAGWEPLLESLRQLLAAAGERQRQPTRRXXXXXXXXXXXXXXXXAVVYLAHRTRNPQESEFFDVLLGQEGGRGPAAEASQRGGPREGCEEGVLSFRCRR--LSDEWVGGCHDEG-CRGGEG------LVWRGGCFPDIALYELSPV 658
BLAST of mRNA_H-elongata_contig4648.11743.1 vs. uniprot
Match: A0A813B9D6_SYMMI (Vcpkmt protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A813B9D6_SYMMI) HSP 1 Score: 82.8 bits (203), Expect = 1.730e-13 Identity = 69/213 (32.39%), Postives = 98/213 (46.01%), Query Frame = 1
Query: 1063 GYFGTVWDCSLALGAFVASLGPRS-MEGKRVVELGAGCGVVSAVCATLGAKEVVATDTNDLLPLLRLNMERIQRRHKGCRSVEVEEYTWGSPTRDRQALARGRFDVIICSDLFC--------------------SSVIYLAHRTRNVQEREFFSSLEGFRCRKEVFVGEGVSEREDTGHCTNIEGEDFWNQTRWQRGCFPDVLLYELTPIVSA 1638
G G VWD L L ++A R +EG+RV+ELG+G G+V CA LGA+EV+ TD D+ LL N+ + R G V+V+ + WG+ D AL +V+I +DL S LA R RN+++ +FF RE +GH + EDF + R C+ D+ L ELTP +A
Sbjct: 163 GIGGGVWDGGLVLLEYLAHPAQRPRLEGRRVLELGSGTGLVGLGCALLGAQEVLLTDLPDVTSLLDFNVALNRARRSGLERVQVQAHEWGT---DVAALEPAALEVVIMADLIYDVEPSKQLIVSIATLAAANPSICFLLAFRPRNIEDPDFF--------------------RELSGHFRIDQAEDFGGELRAL--CY-DLQLLELTPRSAA 349
BLAST of mRNA_H-elongata_contig4648.11743.1 vs. uniprot
Match: A0A812I6H3_9DINO (Vcpkmt protein (Fragment) n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812I6H3_9DINO) HSP 1 Score: 73.9 bits (180), Expect = 1.390e-11 Identity = 45/112 (40.18%), Postives = 65/112 (58.04%), Query Frame = 1
Query: 1063 GYFGTVWDCSLALGAFVASLGPRS-MEGKRVVELGAGCGVVSAVCATLGAKEVVATDTNDLLPLLRLNMERIQRRHKGCRSVEVEEYTWGSPTRDRQALARGRFDVIICSDL 1395
G G VWD L L ++A R+ +EG+RV+ELG+G G+V CA LGA+EV+ TD D+ LL N+ + R G V+V+ + WG+ D AL +V+I +DL
Sbjct: 68 GIGGGVWDGGLVLLEYLAHPAQRTRLEGRRVLELGSGTGLVGLGCALLGAQEVLLTDLPDVTALLDFNVALNRARRSGLERVQVQAHEWGT---DVAALEPAALEVVIMADL 176
BLAST of mRNA_H-elongata_contig4648.11743.1 vs. uniprot
Match: A0A1V9YJ95_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YJ95_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 2.820e-11 Identity = 49/125 (39.20%), Postives = 70/125 (56.00%), Query Frame = 1
Query: 1072 GTVWDCSLALGAFVASLGPRSMEGKRVVELGAGCGVVSAVCATLGAKEVVATDTNDLLPLLRLNMERIQRRHKGCRSVEVEEYTWGSPTRDRQALARGRFDVIICSDLFCSSVIYLAHRTRNVQE 1446
GTVWD + L ++ SLG +++GKR++ELGAG + S V A LGA VVATD +D+LP ++ K R++E EE WG +ALA+ D I+ +D V+Y A +QE
Sbjct: 41 GTVWDAGVVLSHYLDSLGSAALQGKRIIELGAGTALPSIVSARLGAV-VVATDMSDVLPYTIAAIDG-NCSPKTRRAIEAEELIWGIHGIGLKALAQEHCDFIVAAD-----VVYNAKHFAELQE 158
BLAST of mRNA_H-elongata_contig4648.11743.1 vs. uniprot
Match: A0A8K0MRI9_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0MRI9_9ROSA) HSP 1 Score: 72.4 bits (176), Expect = 2.870e-10 Identity = 50/120 (41.67%), Postives = 63/120 (52.50%), Query Frame = 1
Query: 1075 TVWDCSLALGAFVAS------LGPRSMEGKRVVELGAGCGVVSAVCATLGAKEVVATDTNDLLPLLRLNMERIQRR-------HKGCRSVEVEEYTWGSPTRDRQALARGRFDVIICSDL 1395
TVWD SL F+ P ++GKRV+ELGAGCGV A LG +VVATD ++LPLLR N+ER R SV+VEE +WG+ D FD II +D+
Sbjct: 24 TVWDASLVFAKFLEKNCRRGRFSPSKLKGKRVIELGAGCGVAGFGMALLGC-DVVATDQIEVLPLLRRNVERNSSRIVQMNPGSDSFGSVQVEELSWGN--EDHIRAVGPPFDYIIGTDV 140
BLAST of mRNA_H-elongata_contig4648.11743.1 vs. uniprot
Match: A0A7S0NIN9_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0NIN9_MICPS) HSP 1 Score: 72.4 bits (176), Expect = 3.400e-10 Identity = 52/118 (44.07%), Postives = 65/118 (55.08%), Query Frame = 1
Query: 1060 GGYFGTVWDCSLALGAFVASLGPRSMEGKRVVELGAGCGVVSAVCATLGAKEVVATDTNDLLPLLRLNMERI------QRRHKGCRSVEVEEYTWGSPTRDRQALARGR-FDVIICSD 1392
GG+ TVWD S+ L +V S K+V ELGAGCGVVSA G VVATD + LPLLR NMER + +G R EV+ TWG+ A+A G FDV++ +D
Sbjct: 114 GGFASTVWDSSIVLAKYVEKR-RGSFANKKVCELGAGCGVVSAALVKAGCARVVATDLPENLPLLRENMERNCGGGENGQGGEGTR-WEVKALTWGADA----AVALGETFDVVVAAD 225
BLAST of mRNA_H-elongata_contig4648.11743.1 vs. uniprot
Match: C1FI77_MICCC (FCP1 homology domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FI77_MICCC) HSP 1 Score: 73.9 bits (180), Expect = 4.230e-10 Identity = 53/116 (45.69%), Postives = 64/116 (55.17%), Query Frame = 1
Query: 1060 GGYFGTVWDCSLALGAFVASLGPRSMEGKRVVELGAGCGVVSAVCATLGAKEVVATDTNDLLPLLRLNMERIQRRH----KGCRSVEVEEYTWGSPTRDRQALARGR-FDVIICSD 1392
GG+ TVWD S+ L +V S KRV ELGAGCGVVSA G VVATD + LPLLR NMER + +G R EV+ TWG A+A G FDV++ +D
Sbjct: 504 GGFASTVWDSSIVLAKYVEKH-RGSFANKRVCELGAGCGVVSAALVKAGCARVVATDLPENLPLLRENMERNCGENGENGEGAR-WEVKALTWGPDA----AVALGETFDVVVAAD 613
BLAST of mRNA_H-elongata_contig4648.11743.1 vs. uniprot
Match: I3STE9_LOTJA (Uncharacterized protein n=1 Tax=Lotus japonicus TaxID=34305 RepID=I3STE9_LOTJA) HSP 1 Score: 71.6 bits (174), Expect = 4.350e-10 Identity = 49/128 (38.28%), Postives = 68/128 (53.12%), Query Frame = 1
Query: 1075 TVWDCSLALGAFV------ASLGPRSMEGKRVVELGAGCGVVSAVCATLGAKEVVATDTNDLLPLLRLNMER-----IQRRHKGCRSVEVEEYTWGSPTRDRQALARGRFDVIICSDLFCSSVIYLAH 1425
TVWD SL L F+ P ++GKRV+ELGAGCGV A LG +VV TD ++LPLL+ N+ER +Q+ + S++V E WG + + FD II +D V+Y+ H
Sbjct: 37 TVWDASLVLAKFLERNCRKGRFSPAKLKGKRVIELGAGCGVSGFGMALLGC-DVVVTDQKEVLPLLQRNVERNVSRVMQKSPESFGSIKVSELQWGDDSHIKAV--DPPFDYIIGTD-----VVYVEH 156
BLAST of mRNA_H-elongata_contig4648.11743.1 vs. uniprot
Match: B9SCI5_RICCO (Uncharacterized protein n=4 Tax=Ricinus communis TaxID=3988 RepID=B9SCI5_RICCO) HSP 1 Score: 72.0 bits (175), Expect = 4.520e-10 Identity = 51/130 (39.23%), Postives = 65/130 (50.00%), Query Frame = 1
Query: 1075 TVWDCSLALGAFVAS------LGPRSMEGKRVVELGAGCGVVSAVCATLGAKEVVATDTNDLLPLLRLNMERIQRR-------HKGCRSVEVEEYTWGSPTRDRQALARGRFDVIICSDLFCSSVIYLAH 1425
TVWD S+ F+ P ++GKRV+ELGAGCGV A LG +VVATD ++LPLL N+ER R RS++VEE WG+ D FD II +D V+Y H
Sbjct: 37 TVWDASMVFAKFLEKNCRKGRFSPSKLKGKRVIELGAGCGVAGFGMALLGC-DVVATDQKEVLPLLMRNVERNTSRIMQMDTNSVSFRSIKVEELDWGN--EDHIRAVDPPFDYIIGTD-----VVYTEH 158 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4648.11743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig4648.11743.1 >prot_H-elongata_contig4648.11743.1 ID=prot_H-elongata_contig4648.11743.1|Name=mRNA_H-elongata_contig4648.11743.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=569bp GVRVREPHSHSIWREPDSEIVRQGEREGIPLRVALKGERTDNFSLSVESCback to top mRNA from alignment at H-elongata_contig4648:1986..4651+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig4648.11743.1 ID=mRNA_H-elongata_contig4648.11743.1|Name=mRNA_H-elongata_contig4648.11743.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2666bp|location=Sequence derived from alignment at H-elongata_contig4648:1986..4651+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig4648:1986..4651+ >mRNA_H-elongata_contig4648.11743.1 ID=mRNA_H-elongata_contig4648.11743.1|Name=mRNA_H-elongata_contig4648.11743.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3414bp|location=Sequence derived from alignment at H-elongata_contig4648:1986..4651+ (Himanthalia elongata Himel1 dioecious)back to top |