mRNA_H-elongata_contig46474.11740.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig46474.11740.1
Unique NamemRNA_H-elongata_contig46474.11740.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46474.11740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46474contigH-elongata_contig46474:495..1244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size285
Cds size285
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46474.11740.1prot_H-elongata_contig46474.11740.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig46474 495..1244 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930769.5691102-CDS-H-elongata_contig46474:494..5491622930769.5691102-CDS-H-elongata_contig46474:494..549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46474 495..549 +
1691679561.9931085-CDS-H-elongata_contig46474:494..5491691679561.9931085-CDS-H-elongata_contig46474:494..549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46474 495..549 +
1622930769.5836058-CDS-H-elongata_contig46474:708..8041622930769.5836058-CDS-H-elongata_contig46474:708..804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46474 709..804 +
1691679562.0041068-CDS-H-elongata_contig46474:708..8041691679562.0041068-CDS-H-elongata_contig46474:708..804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46474 709..804 +
1622930769.599267-CDS-H-elongata_contig46474:936..9961622930769.599267-CDS-H-elongata_contig46474:936..996Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46474 937..996 +
1691679562.0139081-CDS-H-elongata_contig46474:936..9961691679562.0139081-CDS-H-elongata_contig46474:936..996Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46474 937..996 +
1622930769.6169028-CDS-H-elongata_contig46474:1170..12441622930769.6169028-CDS-H-elongata_contig46474:1170..1244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46474 1171..1244 +
1691679562.0237255-CDS-H-elongata_contig46474:1170..12441691679562.0237255-CDS-H-elongata_contig46474:1170..1244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46474 1171..1244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig46474.11740.1

>prot_H-elongata_contig46474.11740.1 ID=prot_H-elongata_contig46474.11740.1|Name=mRNA_H-elongata_contig46474.11740.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
ATGTHAHTGASFGAYNTTGHTTISATDSIAHRATGTHVHSATSFGTYDAT
GHTTFSATVSITSFGTYGATGDVTFSVTDNITHHATSGNAYNATG
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mRNA from alignment at H-elongata_contig46474:495..1244+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig46474.11740.1 ID=mRNA_H-elongata_contig46474.11740.1|Name=mRNA_H-elongata_contig46474.11740.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=750bp|location=Sequence derived from alignment at H-elongata_contig46474:495..1244+ (Himanthalia elongata Himel1 dioecious)
GCCACCGGCACCCACGCCCACACCGGCGCCAGCTTCGGCGCCTACAACAC
CACCGGTAAGTCTTCCCTCAGCGACGCCAGGTGTGCCACCCGCGACTTCA
CTGGTTTCTCCGCCTACGTCGCAGCCGGTTTCTTCGCCTTCGGCGCCACC
GGCAGCCGCACTCTCTACGCTCCCCGTAACCGCCGCAACGTCAAACCTGT
CCGCTTCACCACAGGTCACACCACCATCAGCGCGACCGATAGCATCGCCC
ACAGAGCCACCGGCACCCACGTCCACAGCGCAACCAGCTTCGGTACCTAC
GACGCCACCGGTAAGTCTTCCCTCAGCCACGCCAGATGTGCCACCCGCGA
CTTCATTGGTTTCTCCGCCTATGTCGCAGCTGATTTCTTCGCCTTCGGCG
CCACCGACAGCCGCAACGTCAAACCCGTCCGCTGTACCACAGGTCACACC
ACCTTCAGCGCCACCGTTAGCATCACCAGCTTCGGCACCTACGGTGCCAC
CGGTGAGTACCCTCACTGCGCTGCCGACCACAGCGATGCTAGCTGCACCA
CCTACGACTTCACCGGTTTCTTCTTGTACGCTGTGGCCATTGTCTCCACC
TTCTGTGCCGCGGAAAAACGGCACCCTTAGTGTCATATGCCACCTACCAC
TATCAACCGTTTTCGCTGTGCCACAGGTGACGTCACCTTCAGCGTCACCG
ATAACATCACCCACCACGCCACCAGCGGCAACGCCTACAACGCCACCGGT
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Coding sequence (CDS) from alignment at H-elongata_contig46474:495..1244+

>mRNA_H-elongata_contig46474.11740.1 ID=mRNA_H-elongata_contig46474.11740.1|Name=mRNA_H-elongata_contig46474.11740.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig46474:495..1244+ (Himanthalia elongata Himel1 dioecious)
GCCACCGGCACCCACGCCCACACCGGCGCCAGCTTCGGCGCCTACAACAC
CACCGGCCACCGGCACCCACGCCCACACCGGCGCCAGCTTCGGCGCCTAC
AACACCACCGGTCACACCACCATCAGCGCGACCGATAGCATCGCCCACAG
AGCCACCGGCACCCACGTCCACAGCGCAACCAGCTTCGGTACCTACGACG
CCACCGGTCACACCACCATCAGCGCGACCGATAGCATCGCCCACAGAGCC
ACCGGCACCCACGTCCACAGCGCAACCAGCTTCGGTACCTACGACGCCAC
CGGTCACACCACCTTCAGCGCCACCGTTAGCATCACCAGCTTCGGCACCT
ACGGTGCCACCGGTCACACCACCTTCAGCGCCACCGTTAGCATCACCAGC
TTCGGCACCTACGGTGCCACCGGTGACGTCACCTTCAGCGTCACCGATAA
CATCACCCACCACGCCACCAGCGGCAACGCCTACAACGCCACCGGTGTGA
CGTCACCTTCAGCGTCACCGATAACATCACCCACCACGCCACCAGCGGCA
ACGCCTACAACGCCACCGGT
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