mRNA_H-elongata_contig46427.11734.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig46427.11734.1
Unique NamemRNA_H-elongata_contig46427.11734.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46427.11734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46427contigH-elongata_contig46427:1141..1890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size306
Cds size156
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46427.11734.1prot_H-elongata_contig46427.11734.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig46427 1195..1794 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930768.9324815-UTR-H-elongata_contig46427:1140..11941622930768.9324815-UTR-H-elongata_contig46427:1140..1194Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig46427 1141..1194 +
1691679561.7475917-UTR-H-elongata_contig46427:1140..11941691679561.7475917-UTR-H-elongata_contig46427:1140..1194Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig46427 1141..1194 +
1622930768.9873161-UTR-H-elongata_contig46427:1794..18901622930768.9873161-UTR-H-elongata_contig46427:1794..1890Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig46427 1795..1890 +
1691679561.793845-UTR-H-elongata_contig46427:1794..18901691679561.793845-UTR-H-elongata_contig46427:1794..1890Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig46427 1795..1890 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930768.9516752-CDS-H-elongata_contig46427:1194..12021622930768.9516752-CDS-H-elongata_contig46427:1194..1202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46427 1195..1202 +
1691679561.7613678-CDS-H-elongata_contig46427:1194..12021691679561.7613678-CDS-H-elongata_contig46427:1194..1202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46427 1195..1202 +
1622930768.9716623-CDS-H-elongata_contig46427:1646..17941622930768.9716623-CDS-H-elongata_contig46427:1646..1794Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46427 1647..1794 +
1691679561.7820923-CDS-H-elongata_contig46427:1646..17941691679561.7820923-CDS-H-elongata_contig46427:1646..1794Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46427 1647..1794 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig46427.11734.1

>prot_H-elongata_contig46427.11734.1 ID=prot_H-elongata_contig46427.11734.1|Name=mRNA_H-elongata_contig46427.11734.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
MARRPPSCPPPRVTNRERHHSPRGRSVAQVVSHDQLVTRARGGSSTVLET
F*
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mRNA from alignment at H-elongata_contig46427:1141..1890+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig46427.11734.1 ID=mRNA_H-elongata_contig46427.11734.1|Name=mRNA_H-elongata_contig46427.11734.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=750bp|location=Sequence derived from alignment at H-elongata_contig46427:1141..1890+ (Himanthalia elongata Himel1 dioecious)
GTGAACCCTTTGCCAAGGCTCAAAAGGCAGTCTCCGACCCAAGATTAAAG
AAACATGGCACGGTGAGTAAGCAAGTCGTCAAAGGAGCAAGAATATACGT
CATCAATTAGGCGTGTGGGGTTTGCTCGTTTCGTCTCGAGGTTGGAATGA
GTTCATATGTTTTTGGAAATAAAAATGGGGTTGGGGTGAAGGCGAATGTT
TGAAGGATAAACTTTTGGAAATAAAAATGAAACACTCGAATACTGCATAC
TTTTTTTTAACCCCTATCGAACTCGATCTGTTTTTTTTTACATTCTAAAT
TCAACATAAAACTTGAAATCTAATTCGGTAAGGGTTCAACGAAGGACACA
CCGCGAGTAATATTCAAAAATATGCAATGTATACTATCATATAGGTATTT
AGTATTTATATATATATATATTATTAATGCTTCCAACTCTTAAAATGCTT
TTCGGATATTCCTTACAAATTAATATTCTCGCTTCCCGCTTCTTGGTGTT
TCTCAGGCGGCCGCCTTCTTGTCCTCCTCCTCGCGTAACAAATCGGGAAA
GACACCACAGTCCACGAGGCCGCTCCGTCGCTCAGGTCGTTTCTCATGAC
CAACTCGTGACCCGCGCACGGGGCGGGAGTTCCACAGTCCTGGAAACGTT
TTGATTGCCTTGTGGGTAGGTAGGTAACGGTATGGATCATTTCATTCTAC
GCAGTACCTACAGGGGTACTTCGATTTCAATTCCCATACATGCTTGTAGG
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Coding sequence (CDS) from alignment at H-elongata_contig46427:1141..1890+

>mRNA_H-elongata_contig46427.11734.1 ID=mRNA_H-elongata_contig46427.11734.1|Name=mRNA_H-elongata_contig46427.11734.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig46427:1141..1890+ (Himanthalia elongata Himel1 dioecious)
ATGGCACGATGGCACGGCGGCCGCCTTCTTGTCCTCCTCCTCGCGTAACA
AATCGGGAAAGACACCACAGTCCACGAGGCCGCTCCGTCGCTCAGGTCGT
TTCTCATGACCAACTCGTGACCCGCGCACGGGGCGGGAGTTCCACAGTCC
TGGAAACGTTTTGAGCGGCCGCCTTCTTGTCCTCCTCCTCGCGTAACAAA
TCGGGAAAGACACCACAGTCCACGAGGCCGCTCCGTCGCTCAGGTCGTTT
CTCATGACCAACTCGTGACCCGCGCACGGGGCGGGAGTTCCACAGTCCTG
GAAACGTTTTGA
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