mRNA_H-elongata_contig46383.11731.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig46383.11731.1
Unique NamemRNA_H-elongata_contig46383.11731.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46383.11731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46383contigH-elongata_contig46383:206..794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size346
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930768.5897253-CDS-H-elongata_contig46383:205..3191622930768.5897253-CDS-H-elongata_contig46383:205..319Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46383 206..319 -
1691679561.6019242-CDS-H-elongata_contig46383:205..3191691679561.6019242-CDS-H-elongata_contig46383:205..319Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46383 206..319 -
1622930768.6077883-CDS-H-elongata_contig46383:563..7941622930768.6077883-CDS-H-elongata_contig46383:563..794Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46383 564..794 -
1691679561.6094587-CDS-H-elongata_contig46383:563..7941691679561.6094587-CDS-H-elongata_contig46383:563..794Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46383 564..794 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46383.11731.1prot_H-elongata_contig46383.11731.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig46383 206..794 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig46383.11731.1

>prot_H-elongata_contig46383.11731.1 ID=prot_H-elongata_contig46383.11731.1|Name=mRNA_H-elongata_contig46383.11731.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
TRGTDISGVECSAINLGNDGCSSGIDVVADQRLGTSGMSIEEQQLFVTAA
GAVPAEIEFGCLDPEEALRRLQGAQAKAMSAMKALGEAKAERDGALVKAE
DALRRARDLQRDLR*
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mRNA from alignment at H-elongata_contig46383:206..794-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig46383.11731.1 ID=mRNA_H-elongata_contig46383.11731.1|Name=mRNA_H-elongata_contig46383.11731.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=589bp|location=Sequence derived from alignment at H-elongata_contig46383:206..794- (Himanthalia elongata Himel1 dioecious)
ACAAGGGGAACTGACATCAGCGGTGTTGAATGCAGCGCCATCAACTTAGG
TAATGACGGTTGTTCCTCGGGGATTGATGTTGTCGCTGATCAACGCCTCG
GTACGAGCGGGATGAGCATAGAGGAGCAGCAGTTGTTTGTAACGGCAGCG
GGAGCGGTGCCTGCGGAGATCGAATTTGGGTGCCTCGATCCAGAAGAAGC
CTTGCGGCGTTTGCAAGGCGCACAGGCAAAGGTACGGTGTCGAGGTATCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCTGGGTGTTATATACTATT
AATGCTATAATCTTTGTGGTCGAAGCAGACTGAATGCCTGAATGCTCAGC
TTCGCTACGACCCATCTGCTCTGTCTTTTCTTAGTTTGGATGTAAAACGT
ACGTACGCTGTAGACGGTGTAGGCTCGACTAATGATCGCGGTCCGCCTTG
GGCACCCTGCGTCTTTCCGAGGCAGGCGATGTCCGCGATGAAAGCGTTGG
GAGAAGCCAAGGCGGAGAGGGACGGGGCCTTGGTGAAGGCAGAAGACGCC
TTGCGCCGCGCGAGAGACCTACAGCGAGATTTAAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig46383:206..794-

>mRNA_H-elongata_contig46383.11731.1 ID=mRNA_H-elongata_contig46383.11731.1|Name=mRNA_H-elongata_contig46383.11731.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig46383:206..794- (Himanthalia elongata Himel1 dioecious)
ACAAGGGGAACTGACATCAGCGGTGTTGAATGCAGCGCCATCAACTTAGG
TAATGACGGTTGTTCCTCGGGGATTGATGTTGTCGCTGATCAACGCCTCG
GTACGAGCGGGATGAGCATAGAGGAGCAGCAGTTGTTTGTAACGGCAGCG
GGAGCGGTGCCTGCGGAGATCGAATTTGGGTGCCTCGATCCAGAAGAAGC
CTTGCGGCGTTTGCAAGGCGCACAGGCAAAGACAAGGGGAACTGACATCA
GCGGTGTTGAATGCAGCGCCATCAACTTAGGTAATGACGGTTGTTCCTCG
GGGATTGATGTTGTCGCTGATCAACGCCTCGGTACGAGCGGGATGAGCAT
AGAGGAGCAGCAGTTGTTTGTAACGGCAGCGGGAGCGGTGCCTGCGGAGA
TCGAATTTGGGTGCCTCGATCCAGAAGAAGCCTTGCGGCGTTTGCAAGGC
GCACAGGCAAAGGCGATGTCCGCGATGAAAGCGTTGGGAGAAGCCAAGGC
GGAGAGGGACGGGGCCTTGGTGAAGGCAGAAGACGCCTTGCGCCGCGCGA
GAGACCTACAGCGAGATTTAAGGTGAGCGATGTCCGCGATGAAAGCGTTG
GGAGAAGCCAAGGCGGAGAGGGACGGGGCCTTGGTGAAGGCAGAAGACGC
CTTGCGCCGCGCGAGAGACCTACAGCGAGATTTAAGGTGA
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