mRNA_H-elongata_contig21003.6075.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig21003.6075.1
Unique NamemRNA_H-elongata_contig21003.6075.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig21003.6075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig21003contigH-elongata_contig21003:4450..4897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size449
Cds size366
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930173.5482085-UTR-H-elongata_contig21003:4449..45311622930173.5482085-UTR-H-elongata_contig21003:4449..4531Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig21003 4450..4531 +
1691679308.5529964-UTR-H-elongata_contig21003:4449..45311691679308.5529964-UTR-H-elongata_contig21003:4449..4531Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig21003 4450..4531 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930173.5721295-CDS-H-elongata_contig21003:4531..48971622930173.5721295-CDS-H-elongata_contig21003:4531..4897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig21003 4532..4897 +
1691679308.562312-CDS-H-elongata_contig21003:4531..48971691679308.562312-CDS-H-elongata_contig21003:4531..4897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig21003 4532..4897 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig21003.6075.1prot_H-elongata_contig21003.6075.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig21003 4532..4897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig21003.6075.1

>prot_H-elongata_contig21003.6075.1 ID=prot_H-elongata_contig21003.6075.1|Name=mRNA_H-elongata_contig21003.6075.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
MTTPRLGGEGGPRRRQGGDGPLVVSGGRRNGVVAEACRVLEGRDVGRRPC
HGFPVLLDHRTDGVIRFPPPSNQSGLAVSSSTARRSADASRSVSSCRREP
RLRLTSSVLSAAVPCRQYCWRD
back to top

mRNA from alignment at H-elongata_contig21003:4450..4897+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig21003.6075.1 ID=mRNA_H-elongata_contig21003.6075.1|Name=mRNA_H-elongata_contig21003.6075.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=448bp|location=Sequence derived from alignment at H-elongata_contig21003:4450..4897+ (Himanthalia elongata Himel1 dioecious)
CCCCGAACCATGCCACCTGCAGGTAAGAGAGGTTGGCAGGTGGGATATAG
GGTTGAGGGGGGGGCATGGTGGCTCGTGAGCGATGACCACTCCGCGACTT
GGTGGAGAGGGAGGTCCTCGGCGCCGTCAGGGAGGTGATGGCCCGCTCGT
GGTCAGCGGTGGACGCCGCAATGGCGTCGTTGCTGAGGCATGCCGTGTGT
TGGAGGGACGCGATGTTGGCCGCCGACCTTGCCATGGTTTCCCTGTCTTG
CTGGATCACCGCACGGACGGCGTCATCCGCTTTCCGCCCCCTAGTAACCA
GAGTGGCTTGGCGGTCTCGAGTTCCACAGCTCGGCGGTCAGCGGACGCCT
CCAGGTCGGTGAGTTCTTGTCGTAGGGAGCCAAGGTTACGGCTCACTAGT
AGTGTCCTGTCCGCGGCGGTCCCCTGCCGCCAGTATTGTTGGAGGGAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig21003:4450..4897+

>mRNA_H-elongata_contig21003.6075.1 ID=mRNA_H-elongata_contig21003.6075.1|Name=mRNA_H-elongata_contig21003.6075.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig21003:4450..4897+ (Himanthalia elongata Himel1 dioecious)
ATGACCACTCCGCGACTTGGTGGAGAGGGAGGTCCTCGGCGCCGTCAGGG
AGGTGATGGCCCGCTCGTGGTCAGCGGTGGACGCCGCAATGGCGTCGTTG
CTGAGGCATGCCGTGTGTTGGAGGGACGCGATGTTGGCCGCCGACCTTGC
CATGGTTTCCCTGTCTTGCTGGATCACCGCACGGACGGCGTCATCCGCTT
TCCGCCCCCTAGTAACCAGAGTGGCTTGGCGGTCTCGAGTTCCACAGCTC
GGCGGTCAGCGGACGCCTCCAGGTCGGTGAGTTCTTGTCGTAGGGAGCCA
AGGTTACGGCTCACTAGTAGTGTCCTGTCCGCGGCGGTCCCCTGCCGCCA
GTATTGTTGGAGGGACATGACCACTCCGCGACTTGGTGGAGAGGGAGGTC
CTCGGCGCCGTCAGGGAGGTGATGGCCCGCTCGTGGTCAGCGGTGGACGC
CGCAATGGCGTCGTTGCTGAGGCATGCCGTGTGTTGGAGGGACGCGATGT
TGGCCGCCGACCTTGCCATGGTTTCCCTGTCTTGCTGGATCACCGCACGG
ACGGCGTCATCCGCTTTCCGCCCCCTAGTAACCAGAGTGGCTTGGCGGTC
TCGAGTTCCACAGCTCGGCGGTCAGCGGACGCCTCCAGGTCGGTGAGTTC
TTGTCGTAGGGAGCCAAGGTTACGGCTCACTAGTAGTGTCCTGTCCGCGG
CGGTCCCCTGCCGCCAGTATTGTTGGAGGGAC
back to top