mRNA_H-elongata_contig209980.6074.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig209980.6074.1 vs. uniprot
Match: A0A6J1CCA1_MOMCH (uncharacterized protein LOC111010253 isoform X2 n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1CCA1_MOMCH) HSP 1 Score: 84.7 bits (208), Expect = 4.220e-18 Identity = 40/86 (46.51%), Postives = 56/86 (65.12%), Query Frame = 1
Query: 1 KIDKDGRIEKYKCRLVAQGFGQIKGIHYEESSSPTPAHASIRMILGMIATLGWEARQLDVDMAYLEAEVEEEIYVELPEAYRDSRK 258
K+ +DG IE+YK RLVAQG+ QI+G+ YEE+ SP +IR+IL + T W RQLDV A+L ++EE+Y+ P +D K
Sbjct: 156 KLKEDGTIERYKARLVAQGYSQIEGVDYEETFSPVIKPTTIRLILALAVTFNWPLRQLDVKNAFLHGFLKEEVYMSQPPGIQDLEK 241
BLAST of mRNA_H-elongata_contig209980.6074.1 vs. uniprot
Match: A0A438E4T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4T4_VITVI) HSP 1 Score: 87.0 bits (214), Expect = 4.640e-18 Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = 1
Query: 1 KIDKDGRIEKYKCRLVAQGFGQIKGIHYEESSSPTPAHASIRMILGMIATLGWEARQLDVDMAYLEAEVEEEIYVELPEAYRDSRK 258
K + DG IE+YK RLVAQGF QI+GI Y+E SP S+R L ++ WE Q+DV+ A+L ++EEE+Y++LPE ++ + K
Sbjct: 603 KYNADGSIERYKARLVAQGFTQIEGIDYQEMFSPVAKMTSVRWFLAVVVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGK 688
BLAST of mRNA_H-elongata_contig209980.6074.1 vs. uniprot
Match: Q9SN55_ARATH (Putative retrotransposon polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9SN55_ARATH) HSP 1 Score: 87.0 bits (214), Expect = 4.660e-18 Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 1
Query: 1 KIDKDGRIEKYKCRLVAQGFGQIKGIHYEESSSPTPAHASIRMILGMIATLGWEARQLDVDMAYLEAEVEEEIYVELPEAY 243
K + DG IE+YK RLVAQGF Q +GI Y E+ SP S++++LG+ A GW Q+DV A+L E++EEIY+ LP+ Y
Sbjct: 575 KYNPDGSIERYKARLVAQGFTQQEGIDYMETFSPVAKFGSVKLLLGLAAATGWSLTQMDVSNAFLHGELDEEIYMSLPQGY 655
BLAST of mRNA_H-elongata_contig209980.6074.1 vs. uniprot
Match: O81617_ARATH (F8M12.17 protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=O81617_ARATH) HSP 1 Score: 87.0 bits (214), Expect = 4.690e-18 Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 1
Query: 1 KIDKDGRIEKYKCRLVAQGFGQIKGIHYEESSSPTPAHASIRMILGMIATLGWEARQLDVDMAYLEAEVEEEIYVELPEAY 243
K + DG IE+YK RLVAQGF Q +GI Y E+ SP S++++LG+ A GW Q+DV A+L E++EEIY+ LP+ Y
Sbjct: 989 KYNPDGSIERYKARLVAQGFTQQEGIDYMETFSPVAKFGSVKLLLGLAAATGWSLTQMDVSNAFLHGELDEEIYMSLPQGY 1069
BLAST of mRNA_H-elongata_contig209980.6074.1 vs. uniprot
Match: A0A540MBJ7_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540MBJ7_MALBA) HSP 1 Score: 84.7 bits (208), Expect = 7.670e-18 Identity = 35/83 (42.17%), Postives = 59/83 (71.08%), Query Frame = 1
Query: 1 KIDKDGRIEKYKCRLVAQGFGQIKGIHYEESSSPTPAHASIRMILGMIATLGWEARQLDVDMAYLEAEVEEEIYVELPEAYRD 249
K D+DG++ +YK RLVA G+ Q +G+ Y+E+ S H ++R++L + A GWE RQLDV A+L E++EE++++ P+ ++D
Sbjct: 189 KKDQDGKVSRYKARLVAHGYSQEQGLDYDETFSLVVRHTTVRLVLSLAAMKGWELRQLDVKNAFLHGELQEEVFMKQPQGFQD 271
BLAST of mRNA_H-elongata_contig209980.6074.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI) HSP 1 Score: 86.3 bits (212), Expect = 8.390e-18 Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = 1
Query: 1 KIDKDGRIEKYKCRLVAQGFGQIKGIHYEESSSPTPAHASIRMILGMIATLGWEARQLDVDMAYLEAEVEEEIYVELPEAYRDSRK 258
K + DG IE+YK RLVAQGF QI+GI Y+E+ SP S+R L + WE Q+DV+ A+L ++EEE+Y++LPE ++ + K
Sbjct: 134 KYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGK 219
BLAST of mRNA_H-elongata_contig209980.6074.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 86.3 bits (212), Expect = 8.720e-18 Identity = 40/84 (47.62%), Postives = 57/84 (67.86%), Query Frame = 1
Query: 1 KIDKDGRIEKYKCRLVAQGFGQIKGIHYEESSSPTPAHASIRMILGMIATLGWEARQLDVDMAYLEAEVEEEIYVELPEAYRDS 252
K DG++EKYK RLVAQGF Q++GI Y E+ +P SIR++L + A WE Q+DV A+L E+EEEIY+++P ++ S
Sbjct: 1048 KTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKAS 1131
BLAST of mRNA_H-elongata_contig209980.6074.1 vs. uniprot
Match: UPI001024B4FB (hypothetical protein n=1 Tax=Enterobacter cloacae complex sp. 4DZ1-17B1 TaxID=2511991 RepID=UPI001024B4FB) HSP 1 Score: 79.7 bits (195), Expect = 1.610e-17 Identity = 33/82 (40.24%), Postives = 55/82 (67.07%), Query Frame = 1
Query: 1 KIDKDGRIEKYKCRLVAQGFGQIKGIHYEESSSPTPAHASIRMILGMIATLGWEARQLDVDMAYLEAEVEEEIYVELPEAYR 246
K DG +E+YK LVA+G+ Q KG+ Y+E+ S ++R+++ M + GW+ R++DVD A+L ++EEE+Y+ PE Y+
Sbjct: 24 KCKSDGSVERYKVMLVAKGYAQTKGLDYDETFSSVAKMTTVRLVIAMASMFGWKLRKMDVDNAFLNGDLEEEVYMIQPEGYQ 105
BLAST of mRNA_H-elongata_contig209980.6074.1 vs. uniprot
Match: A0A5S9XFM1_ARATH (Uncharacterized protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A5S9XFM1_ARATH) HSP 1 Score: 85.5 bits (210), Expect = 1.620e-17 Identity = 39/84 (46.43%), Postives = 58/84 (69.05%), Query Frame = 1
Query: 1 KIDKDGRIEKYKCRLVAQGFGQIKGIHYEESSSPTPAHASIRMILGMIATLGWEARQLDVDMAYLEAEVEEEIYVELPEAYRDS 252
K + DG +E+YK RLVA+GF Q +G+ Y E+ SP AS+++ILG+ A GW Q+DV A+L ++++EEIY+ LP+ Y S
Sbjct: 677 KYNSDGTVERYKARLVAKGFTQQEGVDYFETFSPVAKLASVKLILGLAANKGWSLTQMDVTNAFLHSDLDEEIYMSLPQGYTPS 760
BLAST of mRNA_H-elongata_contig209980.6074.1 vs. uniprot
Match: A5BCC7_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BCC7_VITVI) HSP 1 Score: 85.5 bits (210), Expect = 1.620e-17 Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 1
Query: 1 KIDKDGRIEKYKCRLVAQGFGQIKGIHYEESSSPTPAHASIRMILGMIATLGWEARQLDVDMAYLEAEVEEEIYVELPEAYRDSRK 258
K + DG IE+YK RLVAQGF QI+GI Y+E SP S+R L + WE Q+DV+ A+L ++EEE+Y++LPE ++ + K
Sbjct: 857 KYNADGSIERYKARLVAQGFTQIEGIDYQEXFSPVAKMTSVRCFLAVXVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGK 942 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig209980.6074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig209980.6074.1 >prot_H-elongata_contig209980.6074.1 ID=prot_H-elongata_contig209980.6074.1|Name=mRNA_H-elongata_contig209980.6074.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp KIDKDGRIEKYKCRLVAQGFGQIKGIHYEESSSPTPAHASIRMILGMIATback to top mRNA from alignment at H-elongata_contig209980:772..1032+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig209980.6074.1 ID=mRNA_H-elongata_contig209980.6074.1|Name=mRNA_H-elongata_contig209980.6074.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at H-elongata_contig209980:772..1032+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig209980:772..1032+ >mRNA_H-elongata_contig209980.6074.1 ID=mRNA_H-elongata_contig209980.6074.1|Name=mRNA_H-elongata_contig209980.6074.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig209980:772..1032+ (Himanthalia elongata Himel1 dioecious)back to top |