mRNA_H-elongata_contig209980.6074.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig209980.6074.1
Unique NamemRNA_H-elongata_contig209980.6074.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig209980.6074.1 vs. uniprot
Match: A0A6J1CCA1_MOMCH (uncharacterized protein LOC111010253 isoform X2 n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1CCA1_MOMCH)

HSP 1 Score: 84.7 bits (208), Expect = 4.220e-18
Identity = 40/86 (46.51%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    1 KIDKDGRIEKYKCRLVAQGFGQIKGIHYEESSSPTPAHASIRMILGMIATLGWEARQLDVDMAYLEAEVEEEIYVELPEAYRDSRK 258
            K+ +DG IE+YK RLVAQG+ QI+G+ YEE+ SP     +IR+IL +  T  W  RQLDV  A+L   ++EE+Y+  P   +D  K
Sbjct:  156 KLKEDGTIERYKARLVAQGYSQIEGVDYEETFSPVIKPTTIRLILALAVTFNWPLRQLDVKNAFLHGFLKEEVYMSQPPGIQDLEK 241          
BLAST of mRNA_H-elongata_contig209980.6074.1 vs. uniprot
Match: A0A438E4T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4T4_VITVI)

HSP 1 Score: 87.0 bits (214), Expect = 4.640e-18
Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = 1
Query:    1 KIDKDGRIEKYKCRLVAQGFGQIKGIHYEESSSPTPAHASIRMILGMIATLGWEARQLDVDMAYLEAEVEEEIYVELPEAYRDSRK 258
            K + DG IE+YK RLVAQGF QI+GI Y+E  SP     S+R  L ++    WE  Q+DV+ A+L  ++EEE+Y++LPE ++ + K
Sbjct:  603 KYNADGSIERYKARLVAQGFTQIEGIDYQEMFSPVAKMTSVRWFLAVVVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGK 688          
BLAST of mRNA_H-elongata_contig209980.6074.1 vs. uniprot
Match: Q9SN55_ARATH (Putative retrotransposon polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9SN55_ARATH)

HSP 1 Score: 87.0 bits (214), Expect = 4.660e-18
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 1
Query:    1 KIDKDGRIEKYKCRLVAQGFGQIKGIHYEESSSPTPAHASIRMILGMIATLGWEARQLDVDMAYLEAEVEEEIYVELPEAY 243
            K + DG IE+YK RLVAQGF Q +GI Y E+ SP     S++++LG+ A  GW   Q+DV  A+L  E++EEIY+ LP+ Y
Sbjct:  575 KYNPDGSIERYKARLVAQGFTQQEGIDYMETFSPVAKFGSVKLLLGLAAATGWSLTQMDVSNAFLHGELDEEIYMSLPQGY 655          
BLAST of mRNA_H-elongata_contig209980.6074.1 vs. uniprot
Match: O81617_ARATH (F8M12.17 protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=O81617_ARATH)

HSP 1 Score: 87.0 bits (214), Expect = 4.690e-18
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 1
Query:    1 KIDKDGRIEKYKCRLVAQGFGQIKGIHYEESSSPTPAHASIRMILGMIATLGWEARQLDVDMAYLEAEVEEEIYVELPEAY 243
            K + DG IE+YK RLVAQGF Q +GI Y E+ SP     S++++LG+ A  GW   Q+DV  A+L  E++EEIY+ LP+ Y
Sbjct:  989 KYNPDGSIERYKARLVAQGFTQQEGIDYMETFSPVAKFGSVKLLLGLAAATGWSLTQMDVSNAFLHGELDEEIYMSLPQGY 1069          
BLAST of mRNA_H-elongata_contig209980.6074.1 vs. uniprot
Match: A0A540MBJ7_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540MBJ7_MALBA)

HSP 1 Score: 84.7 bits (208), Expect = 7.670e-18
Identity = 35/83 (42.17%), Postives = 59/83 (71.08%), Query Frame = 1
Query:    1 KIDKDGRIEKYKCRLVAQGFGQIKGIHYEESSSPTPAHASIRMILGMIATLGWEARQLDVDMAYLEAEVEEEIYVELPEAYRD 249
            K D+DG++ +YK RLVA G+ Q +G+ Y+E+ S    H ++R++L + A  GWE RQLDV  A+L  E++EE++++ P+ ++D
Sbjct:  189 KKDQDGKVSRYKARLVAHGYSQEQGLDYDETFSLVVRHTTVRLVLSLAAMKGWELRQLDVKNAFLHGELQEEVFMKQPQGFQD 271          
BLAST of mRNA_H-elongata_contig209980.6074.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI)

HSP 1 Score: 86.3 bits (212), Expect = 8.390e-18
Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = 1
Query:    1 KIDKDGRIEKYKCRLVAQGFGQIKGIHYEESSSPTPAHASIRMILGMIATLGWEARQLDVDMAYLEAEVEEEIYVELPEAYRDSRK 258
            K + DG IE+YK RLVAQGF QI+GI Y+E+ SP     S+R  L +     WE  Q+DV+ A+L  ++EEE+Y++LPE ++ + K
Sbjct:  134 KYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGK 219          
BLAST of mRNA_H-elongata_contig209980.6074.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 86.3 bits (212), Expect = 8.720e-18
Identity = 40/84 (47.62%), Postives = 57/84 (67.86%), Query Frame = 1
Query:    1 KIDKDGRIEKYKCRLVAQGFGQIKGIHYEESSSPTPAHASIRMILGMIATLGWEARQLDVDMAYLEAEVEEEIYVELPEAYRDS 252
            K   DG++EKYK RLVAQGF Q++GI Y E+ +P     SIR++L + A   WE  Q+DV  A+L  E+EEEIY+++P  ++ S
Sbjct: 1048 KTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKAS 1131          
BLAST of mRNA_H-elongata_contig209980.6074.1 vs. uniprot
Match: UPI001024B4FB (hypothetical protein n=1 Tax=Enterobacter cloacae complex sp. 4DZ1-17B1 TaxID=2511991 RepID=UPI001024B4FB)

HSP 1 Score: 79.7 bits (195), Expect = 1.610e-17
Identity = 33/82 (40.24%), Postives = 55/82 (67.07%), Query Frame = 1
Query:    1 KIDKDGRIEKYKCRLVAQGFGQIKGIHYEESSSPTPAHASIRMILGMIATLGWEARQLDVDMAYLEAEVEEEIYVELPEAYR 246
            K   DG +E+YK  LVA+G+ Q KG+ Y+E+ S      ++R+++ M +  GW+ R++DVD A+L  ++EEE+Y+  PE Y+
Sbjct:   24 KCKSDGSVERYKVMLVAKGYAQTKGLDYDETFSSVAKMTTVRLVIAMASMFGWKLRKMDVDNAFLNGDLEEEVYMIQPEGYQ 105          
BLAST of mRNA_H-elongata_contig209980.6074.1 vs. uniprot
Match: A0A5S9XFM1_ARATH (Uncharacterized protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A5S9XFM1_ARATH)

HSP 1 Score: 85.5 bits (210), Expect = 1.620e-17
Identity = 39/84 (46.43%), Postives = 58/84 (69.05%), Query Frame = 1
Query:    1 KIDKDGRIEKYKCRLVAQGFGQIKGIHYEESSSPTPAHASIRMILGMIATLGWEARQLDVDMAYLEAEVEEEIYVELPEAYRDS 252
            K + DG +E+YK RLVA+GF Q +G+ Y E+ SP    AS+++ILG+ A  GW   Q+DV  A+L ++++EEIY+ LP+ Y  S
Sbjct:  677 KYNSDGTVERYKARLVAKGFTQQEGVDYFETFSPVAKLASVKLILGLAANKGWSLTQMDVTNAFLHSDLDEEIYMSLPQGYTPS 760          
BLAST of mRNA_H-elongata_contig209980.6074.1 vs. uniprot
Match: A5BCC7_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BCC7_VITVI)

HSP 1 Score: 85.5 bits (210), Expect = 1.620e-17
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 1
Query:    1 KIDKDGRIEKYKCRLVAQGFGQIKGIHYEESSSPTPAHASIRMILGMIATLGWEARQLDVDMAYLEAEVEEEIYVELPEAYRDSRK 258
            K + DG IE+YK RLVAQGF QI+GI Y+E  SP     S+R  L +     WE  Q+DV+ A+L  ++EEE+Y++LPE ++ + K
Sbjct:  857 KYNADGSIERYKARLVAQGFTQIEGIDYQEXFSPVAKMTSVRCFLAVXVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGK 942          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig209980.6074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6J1CCA1_MOMCH4.220e-1846.51uncharacterized protein LOC111010253 isoform X2 n=... [more]
A0A438E4T4_VITVI4.640e-1846.51Retrovirus-related Pol polyprotein from transposon... [more]
Q9SN55_ARATH4.660e-1849.38Putative retrotransposon polyprotein n=1 Tax=Arabi... [more]
O81617_ARATH4.690e-1849.38F8M12.17 protein n=1 Tax=Arabidopsis thaliana TaxI... [more]
A0A540MBJ7_MALBA7.670e-1842.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438GNV2_VITVI8.390e-1846.51Retrovirus-related Pol polyprotein from transposon... [more]
A0A0C2WN23_AMAMK8.720e-1847.62Integrase catalytic domain-containing protein (Fra... [more]
UPI001024B4FB1.610e-1740.24hypothetical protein n=1 Tax=Enterobacter cloacae ... [more]
A0A5S9XFM1_ARATH1.620e-1746.43Uncharacterized protein n=1 Tax=Arabidopsis thalia... [more]
A5BCC7_VITVI1.620e-1746.51Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig209980contigH-elongata_contig209980:772..1032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score83.2
Seed ortholog evalue6.6e-14
Seed eggNOG ortholog3750.XP_008381548.1
EggNOG free text desc.cysteine-rich RLK (RECEPTOR-like protein kinase) 8
EggNOG OGs37RIF@33090,3G9AM@35493,COG2801@1,KOG0017@2759
COG Functional cat.K
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size261
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930173.500116-CDS-H-elongata_contig209980:771..10321622930173.500116-CDS-H-elongata_contig209980:771..1032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209980 772..1032 +
1691679308.541047-CDS-H-elongata_contig209980:771..10321691679308.541047-CDS-H-elongata_contig209980:771..1032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209980 772..1032 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig209980.6074.1prot_H-elongata_contig209980.6074.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig209980 772..1032 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig209980.6074.1

>prot_H-elongata_contig209980.6074.1 ID=prot_H-elongata_contig209980.6074.1|Name=mRNA_H-elongata_contig209980.6074.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
KIDKDGRIEKYKCRLVAQGFGQIKGIHYEESSSPTPAHASIRMILGMIAT
LGWEARQLDVDMAYLEAEVEEEIYVELPEAYRDSRK*
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mRNA from alignment at H-elongata_contig209980:772..1032+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig209980.6074.1 ID=mRNA_H-elongata_contig209980.6074.1|Name=mRNA_H-elongata_contig209980.6074.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at H-elongata_contig209980:772..1032+ (Himanthalia elongata Himel1 dioecious)
AAAATCGACAAGGATGGAAGGATCGAAAAGTATAAATGTCGTCTCGTGGC GCAGGGTTTTGGGCAGATCAAAGGCATACACTACGAGGAATCCTCCTCTC CGACTCCTGCGCATGCCAGCATTAGAATGATACTGGGCATGATCGCGACT CTCGGCTGGGAGGCGCGGCAGCTGGACGTCGACATGGCCTACCTGGAGGC CGAAGTGGAGGAGGAGATCTACGTTGAGCTCCCAGAGGCATACCGTGACT CCAGGAAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig209980:772..1032+

>mRNA_H-elongata_contig209980.6074.1 ID=mRNA_H-elongata_contig209980.6074.1|Name=mRNA_H-elongata_contig209980.6074.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig209980:772..1032+ (Himanthalia elongata Himel1 dioecious)
AAAATCGACAAGGATGGAAGGATCGAAAAGTATAAATGTCGTCTCGTGGC
GCAGGGTTTTGGGCAGATCAAAGGCATACACTACGAGGAATCCTCCTCTC
CGACTCCTGCGCATGCCAGCATTAGAATGATACTGGGCATGATCGCGACT
CTCGGCTGGGAGGCGCGGCAGCTGGACGTCGACATGGCCTACCTGGAGGC
CGAAGTGGAGGAGGAGATCTACGTTGAGCTCCCAGAGGCATACCGTGACT
CCAGGAAATAAAAAATCGACAAGGATGGAAGGATCGAAAAGTATAAATGT
CGTCTCGTGGCGCAGGGTTTTGGGCAGATCAAAGGCATACACTACGAGGA
ATCCTCCTCTCCGACTCCTGCGCATGCCAGCATTAGAATGATACTGGGCA
TGATCGCGACTCTCGGCTGGGAGGCGCGGCAGCTGGACGTCGACATGGCC
TACCTGGAGGCCGAAGTGGAGGAGGAGATCTACGTTGAGCTCCCAGAGGC
ATACCGTGACTCCAGGAAATAA
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