mRNA_H-elongata_contig209933.6073.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig209933.6073.1
Unique NamemRNA_H-elongata_contig209933.6073.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig209933.6073.1 vs. uniprot
Match: A0A6H5KYQ1_9PHAE (Tim44 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYQ1_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 1.750e-49
Identity = 84/95 (88.42%), Postives = 90/95 (94.74%), Query Frame = 1 
Query:    1 AQHPLVYKMSSAWDSLAAESDEGIGVRELRRLDPSFSVEEWKRDIQELFLPEFMSAFLRGDVDMLKQWTGEACFNKLESEARQRKAEGMVLVRHV 285
            +QHPLVYK+SSAWDSL AESDEGIGVRELRRLDPSFSVE+WKRDIQELFLPEFMSAFLRGDV +LKQWTGEAC+NKL SEARQRKA+GMVL  HV
Sbjct:  426 SQHPLVYKLSSAWDSLTAESDEGIGVRELRRLDPSFSVEDWKRDIQELFLPEFMSAFLRGDVKLLKQWTGEACYNKLASEARQRKADGMVLDPHV 520
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BLAST of mRNA_H-elongata_contig209933.6073.1 vs. uniprot
Match: A0A7S2XX10_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX10_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.090e-29
Identity = 52/95 (54.74%), Postives = 73/95 (76.84%), Query Frame = 1 
Query:    1 AQHPLVYKMSSAWDSLAAESDEGIGVRELRRLDPSFSVEEWKRDIQELFLPEFMSAFLRGDVDMLKQWTGEACFNKLESEARQRKAEGMVLVRHV 285
            +Q P++YK+S+AWD +++E++ GI VRELRRLDP+FS+++WK+D+ E  L  F+ AFLRGD   L Q+ GEA +N+L  E RQRKA+G VL  HV
Sbjct:   41 SQSPIIYKLSAAWDMVSSETEVGIAVRELRRLDPNFSIDDWKQDVVENMLRPFLEAFLRGDGRALNQYCGEAVYNRLNQEIRQRKADGQVLDPHV 135
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BLAST of mRNA_H-elongata_contig209933.6073.1 vs. uniprot
Match: A0A7R9YWE6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YWE6_9STRA)

HSP 1 Score: 103 bits (258), Expect = 2.570e-25
Identity = 48/95 (50.53%), Postives = 69/95 (72.63%), Query Frame = 1 
Query:    1 AQHPLVYKMSSAWDSLAAESDEGIGVRELRRLDPSFSVEEWKRDIQELFLPEFMSAFLRGDVDMLKQWTGEACFNKLESEARQRKAEGMVLVRHV 285
            +Q+P VY++SS +D+L AES+  I V+ELR+LDP F++EEWKRD+ E  LPE M+ FL G +  L+ W GE+ +N+L +E R RK EG+ +  HV
Sbjct:  107 SQNPWVYRVSSVYDTLTAESEYAIAVKELRKLDPDFTLEEWKRDVVEHTLPEVMALFLEGRIKELQPWLGESVYNRLAAEMRARKKEGVYIDTHV 201
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BLAST of mRNA_H-elongata_contig209933.6073.1 vs. uniprot
Match: A0A7S1XKH2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XKH2_9STRA)

HSP 1 Score: 100 bits (248), Expect = 4.050e-23
Identity = 43/89 (48.31%), Postives = 63/89 (70.79%), Query Frame = 1 
Query:    1 AQHPLVYKMSSAWDSLAAESDEGIGVRELRRLDPSFSVEEWKRDIQELFLPEFMSAFLRGDVDMLKQWTGEACFNKLESEARQRKAEGM 267
            +QHP+VY +SSAWDS+ AE++EG  +RELRRLDP F+ E W+  + E   P  ++A+L+G    +K+W GE  +N++  E R RKAEG+
Sbjct:  178 SQHPIVYGISSAWDSITAETEEGYTLRELRRLDPGFNHETWRYQVTEEICPGLLAAYLKGSPREMKEWVGEGVYNRIAEEMRARKAEGL 266
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BLAST of mRNA_H-elongata_contig209933.6073.1 vs. uniprot
Match: A0A7S2XQK3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQK3_9STRA)

HSP 1 Score: 100 bits (248), Expect = 5.780e-23
Identity = 45/89 (50.56%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:    1 AQHPLVYKMSSAWDSLAAESDEGIGVRELRRLDPSFSVEEWKRDIQELFLPEFMSAFLRGDVDMLKQWTGEACFNKLESEARQRKAEGM 267
            +Q+P VY++SS +D++ AES+  I VRELR+LDP F++E WK D+ E  LP+ M  FL+G +  LK W GEA +N+L +E R+RK EG+
Sbjct:  208 SQNPWVYRLSSVYDTITAESEYAIAVRELRKLDPDFTLESWKTDVVEHTLPKIMDMFLQGRIKELKPWLGEAVYNRLAAEIRERKKEGV 296
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BLAST of mRNA_H-elongata_contig209933.6073.1 vs. uniprot
Match: A0A7S1D526_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D526_CYCTE)

HSP 1 Score: 96.7 bits (239), Expect = 2.960e-22
Identity = 44/95 (46.32%), Postives = 65/95 (68.42%), Query Frame = 1 
Query:    1 AQHPLVYKMSSAWDSLAAESDEGIGVRELRRLDPSFSVEEWKRDIQELFLPEFMSAFLRGDVDMLKQWTGEACFNKLESEARQRKAEGMVLVRHV 285
            +Q+P VY++SS +D++ AES+  + +RELR LDP F++E+WK D+ E  LP  M  FL G V  LK W GEA FN++ +E + R+ EG+ +  HV
Sbjct:  105 SQNPWVYRISSVYDTVTAESEYTVAIRELRMLDPDFTLEDWKEDVVERTLPRIMEWFLEGRVAQLKPWLGEAVFNRIAAEIKARQKEGVQIDTHV 199
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BLAST of mRNA_H-elongata_contig209933.6073.1 vs. uniprot
Match: W7TL62_9STRA (Membrane transporter, Tim44-related/Ribosomal protein L45 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TL62_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 5.210e-22
Identity = 45/95 (47.37%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:    1 AQHPLVYKMSSAWDSLAAESDEGIGVRELRRLDPSFSVEEWKRDIQELFLPEFMSAFLRGDVDMLKQWTGEACFNKLESEARQRKAEGMVLVRHV 285
            +Q+P+VYK+SS WD L +E++ GI +RE+RR DP F VE+W   + E FLP F  A+L+GD+  LK +  E  + ++  E R RKAEG+ L  HV
Sbjct:  405 SQNPIVYKLSSMWDDLTSETELGIALREIRRADPDFVVEDWVNTLSESFLPLFFKAYLKGDLKTLKPYLSEGMYRQMAEEFRLRKAEGLALDPHV 499
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BLAST of mRNA_H-elongata_contig209933.6073.1 vs. uniprot
Match: B8BZ52_THAPS (Tim44-like protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZ52_THAPS)

HSP 1 Score: 94.4 bits (233), Expect = 1.240e-21
Identity = 43/89 (48.31%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:    1 AQHPLVYKMSSAWDSLAAESDEGIGVRELRRLDPSFSVEEWKRDIQELFLPEFMSAFLRGDVDMLKQWTGEACFNKLESEARQRKAEGM 267
            +Q+P VY+ SS +D+L AES+     R+L++LDP F++E WKRD+ E  LP+ M  FL G +  LK W GEA +N+L +E R RK EG+
Sbjct:   66 SQNPWVYRASSVYDTLTAESEFAAASRQLQKLDPDFTLENWKRDVVEHTLPQIMKLFLEGRIQELKPWLGEAVYNRLAAEVRARKKEGV 154
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BLAST of mRNA_H-elongata_contig209933.6073.1 vs. uniprot
Match: A0A7S2KUG6_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KUG6_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.350e-21
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:    1 AQHPLVYKMSSAWDSLAAESDEGIGVRELRRLDPSFSVEEWKRDIQELFLPEFMSAFLRGDVDMLKQWTGEACFNKLESEARQRKAEGM 267
            +Q+P VY+ SS +D+L AES+     R L++LDP F++E WKRD+ E  LP  M  FL G V  LK W GEA +N+L +EAR RK+EG+
Sbjct:  248 SQNPWVYRASSVYDTLTAESEFAAATRHLQKLDPDFTMENWKRDVMEHTLPNIMKLFLEGRVQELKPWLGEAVYNRLAAEARARKSEGV 336
[Close]
BLAST of mRNA_H-elongata_contig209933.6073.1 vs. uniprot
Match: A0A7S2EKC6_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EKC6_TRICV)

HSP 1 Score: 95.5 bits (236), Expect = 1.580e-21
Identity = 47/95 (49.47%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:    1 AQHPLVYKMSSAWDSLAAESDEGIGVRELRRLDPSFSVEEWKRDIQELFLPEFMSAFLRGDVDMLKQWTGEACFNKLESEARQRKAEGMVLVRHV 285
            +Q+P VY++SS +D+L AES+     RELR LDPSF++EEWK D+ E  LPE M  FL G +  LK   GE+ +N+L +E R RK EG+ +  HV
Sbjct:  150 SQNPWVYRVSSVYDTLTAESEFAAATRELRELDPSFTLEEWKHDVVEHTLPEVMRLFLEGRIKELKPRLGESVYNRLAAEMRARKKEGVYIDTHV 244
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig209933.6073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYQ1_9PHAE1.750e-4988.42Tim44 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A7S2XX10_9STRA1.090e-2954.74Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9YWE6_9STRA2.570e-2550.53Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S1XKH2_9STRA4.050e-2348.31Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2XQK3_9STRA5.780e-2350.56Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1D526_CYCTE2.960e-2246.32Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
W7TL62_9STRA5.210e-2247.37Membrane transporter, Tim44-related/Ribosomal prot... [more]
B8BZ52_THAPS1.240e-2148.31Tim44-like protein n=1 Tax=Thalassiosira pseudonan... [more]
A0A7S2KUG6_9STRA1.350e-2150.56Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2EKC6_TRICV1.580e-2149.47Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig209933contigH-elongata_contig209933:84..730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.8
Seed ortholog evalue5.6e-37
Seed eggNOG ortholog2880.D7G7Z7
KEGG koko:K17804
KEGG TC3.A.8.1
GOsGO:0003674,GO:0003700,GO:0006355,GO:0008150,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0080167,GO:0140110,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.protein import into mitochondrial matrix
EggNOG OGsKOG2580@1,KOG2580@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko03029
Hectar predicted targeting categoryother localisation
Exons2
Model size285
Cds size261
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig209933.6073.1prot_H-elongata_contig209933.6073.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig209933 84..706 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930173.1329298-CDS-H-elongata_contig209933:83..1911622930173.1329298-CDS-H-elongata_contig209933:83..191Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209933 84..191 -
1691679308.5117612-CDS-H-elongata_contig209933:83..1911691679308.5117612-CDS-H-elongata_contig209933:83..191Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209933 84..191 -
1622930173.1453779-CDS-H-elongata_contig209933:553..7061622930173.1453779-CDS-H-elongata_contig209933:553..706Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209933 554..706 -
1691679308.522911-CDS-H-elongata_contig209933:553..7061691679308.522911-CDS-H-elongata_contig209933:553..706Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209933 554..706 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930173.1571643-UTR-H-elongata_contig209933:706..7301622930173.1571643-UTR-H-elongata_contig209933:706..730Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig209933 707..730 -
1691679308.531471-UTR-H-elongata_contig209933:706..7301691679308.531471-UTR-H-elongata_contig209933:706..730Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig209933 707..730 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig209933.6073.1

>prot_H-elongata_contig209933.6073.1 ID=prot_H-elongata_contig209933.6073.1|Name=mRNA_H-elongata_contig209933.6073.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
MSSAWDSLAAESDEGIGVRELRRLDPSFSVEEWKRDIQELFLPEFMSAFL
RGDVDMLKQWTGEACFNKLESEARQRKAEGMVLVRHV
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mRNA from alignment at H-elongata_contig209933:84..730-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig209933.6073.1 ID=mRNA_H-elongata_contig209933.6073.1|Name=mRNA_H-elongata_contig209933.6073.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=647bp|location=Sequence derived from alignment at H-elongata_contig209933:84..730- (Himanthalia elongata Himel1 dioecious)
GCGCAGCACCCTCTAGTGTACAAGATGTCCTCGGCGTGGGATTCGCTGGC
GGCCGAGAGCGACGAGGGGATAGGAGTGCGCGAGCTCCGGCGGCTAGACC
CATCATTCTCCGTAGAAGAATGGAAGAGAGACATCCAGGAACTTTTCCTG
CCAGAATTCATGTCGGCATTTTTAAGAGTGAGTTCCAACGAGGCACATCT
GCCTGTGTTTCGTTGGTGTGCGACAACATCAACGCCATACTTCTTTTGAC
CTTATCTATAGTGATATATAGATAGATAGATCTGTCTGGATAAATAGATA
GATCTGTCTAGATAGATAGATATGTTGAATCTAGATAGATAGATCTGTCT
AGATAGATAGATCTGTCTAGATAGATAGATCTGTCGAACTCTTTTTTTCA
TCTGACCCCGGCTCGGAATAGAAAAACATGGAAGGTTTCGTCCTATTTGC
CAGGTTGAAGATTTGTAATGAAAGCTAATGTTGACCCACGTGTGACGGTT
TTCGTGTACATGTGTGTCTTTTGTTCGTTTTTTTTACAGGGTGACGTGGA
TATGTTGAAACAATGGACAGGGGAGGCATGCTTCAACAAGCTCGAATCGG
AGGCAAGGCAAAGAAAGGCGGAAGGCATGGTCTTGGTGAGACACGTC
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Coding sequence (CDS) from alignment at H-elongata_contig209933:84..730-

>mRNA_H-elongata_contig209933.6073.1 ID=mRNA_H-elongata_contig209933.6073.1|Name=mRNA_H-elongata_contig209933.6073.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig209933:84..730- (Himanthalia elongata Himel1 dioecious)
ATGTCCTCGGCGTGGGATTCGCTGGCGGCCGAGAGCGACGAGGGGATAGG
AGTGCGCGAGCTCCGGCGGCTAGACCCATCATTCTCCGTAGAAGAATGGA
AGAGAGACATCCAGGAACTTTTCCTGCCAGAATTCATGTCGGCATTTTTA
AGAATGTCCTCGGCGTGGGATTCGCTGGCGGCCGAGAGCGACGAGGGGAT
AGGAGTGCGCGAGCTCCGGCGGCTAGACCCATCATTCTCCGTAGAAGAAT
GGAAGAGAGACATCCAGGAACTTTTCCTGCCAGAATTCATGTCGGCATTT
TTAAGAGGTGACGTGGATATGTTGAAACAATGGACAGGGGAGGCATGCTT
CAACAAGCTCGAATCGGAGGCAAGGCAAAGAAAGGCGGAAGGCATGGTCT
TGGTGAGACACGTCGGTGACGTGGATATGTTGAAACAATGGACAGGGGAG
GCATGCTTCAACAAGCTCGAATCGGAGGCAAGGCAAAGAAAGGCGGAAGG
CATGGTCTTGGTGAGACACGTC
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