mRNA_H-elongata_contig20992.6072.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20992.6072.1
Unique NamemRNA_H-elongata_contig20992.6072.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20992.6072.1 vs. uniprot
Match: D7G3B8_ECTSI (DNA primase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3B8_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 2.770e-31
Identity = 56/72 (77.78%), Postives = 64/72 (88.89%), Query Frame = 1 
Query:    1 FRTQVLDRAVPWSDWYGDRILAEHDFS-DANAFRRCTDRLTGFISDLSIPTDQTFHVHRFARALARGESGVR 213
            FR +V+ +AVPWSDWYGD ILA+HDF+ DANAFRRCTDRLTGF+SDLSIPTDQTFHVHRFA+ALA G   +R
Sbjct:  633 FRAKVMGKAVPWSDWYGDSILADHDFAGDANAFRRCTDRLTGFMSDLSIPTDQTFHVHRFAKALAGGNEAMR 704
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BLAST of mRNA_H-elongata_contig20992.6072.1 vs. uniprot
Match: A0A6H5K157_9PHAE (Toprim domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K157_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 9.620e-31
Identity = 56/72 (77.78%), Postives = 63/72 (87.50%), Query Frame = 1 
Query:    1 FRTQVLDRAVPWSDWYGDRILAEHDF-SDANAFRRCTDRLTGFISDLSIPTDQTFHVHRFARALARGESGVR 213
            FR +V+D+AVPWS WYGD ILA+HDF SDANAFRRCTDRL GF+SDLSIPTDQTFHVHRFA+ALA G   +R
Sbjct:  467 FRAKVMDKAVPWSVWYGDSILADHDFASDANAFRRCTDRLAGFMSDLSIPTDQTFHVHRFAKALAGGNEAMR 538
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BLAST of mRNA_H-elongata_contig20992.6072.1 vs. uniprot
Match: A0A7S3Y9A4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y9A4_HETAK)

HSP 1 Score: 71.2 bits (173), Expect = 4.640e-13
Identity = 29/72 (40.28%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:    1 FRTQVLDRAVPWSDWYGDRILAEHDFSDANAFRRCTDRLTGFISDLSIPTDQTFHVHRFARALARGESGVRM 216
            +R+Q++++A  WS+WYGD +L+E++  D  +FRR  + LT F++ L    D+TFH +RFA+ LA G   +++
Sbjct:  180 YRSQIIEKAQVWSEWYGDYLLSEYEADDPESFRRVVNSLTAFLATLPA-ADRTFHCYRFAKKLANGNVSLQV 250
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BLAST of mRNA_H-elongata_contig20992.6072.1 vs. uniprot
Match: A0A7S2UJ00_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UJ00_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.240e-5
Identity = 22/66 (33.33%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:   10 QVLDRAVPWSDWYGDRILAEHDFS----DANAFRRCTDRLTGFISDLSIPTDQTFHVHRFARALAR 195
            Q+LD A+PWSDWY +RI++  D       +++F +  + ++ F+S  S P D+T   +  A  L++
Sbjct:   13 QILDTAIPWSDWYMERIVSVCDLDATSGSSDSFPQVCEAVSDFLSSFSNPADRTKRAYEAAGTLSK 78
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BLAST of mRNA_H-elongata_contig20992.6072.1 vs. uniprot
Match: A0A7S3LGG0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LGG0_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 7.310e-5
Identity = 26/68 (38.24%), Postives = 33/68 (48.53%), Query Frame = 1 
Query:    1 FRTQVLDRAVPWSDWYGDRILAEHDFS----DANAFRRCTDRLTGFISDLSIPTDQTFHVHRFARALA 192
            F+   LD+AVPW DWY  RIL  H  S    D  + R   DRL  FI+  S   D+       A +L+
Sbjct:   27 FKVSTLDKAVPWIDWYIQRILGSHSPSAEPGDDGSLRTIIDRLAEFINICSNQIDRETKASEIAASLS 94
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20992.6072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G3B8_ECTSI2.770e-3177.78DNA primase n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5K157_9PHAE9.620e-3177.78Toprim domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S3Y9A4_HETAK4.640e-1340.28Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2UJ00_9STRA1.240e-533.33Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S3LGG0_9STRA7.310e-538.24Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20992contigH-elongata_contig20992:6045..6263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue2.8e-26
Seed eggNOG ortholog2880.D7G3B8
EggNOG free text desc.DNA primase catalytic core, N-terminal domain
EggNOG OGs2S0EV@2759,COG0358@1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930173.0951788-CDS-H-elongata_contig20992:6044..62631622930173.0951788-CDS-H-elongata_contig20992:6044..6263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20992 6045..6263 -
1691679308.5009298-CDS-H-elongata_contig20992:6044..62631691679308.5009298-CDS-H-elongata_contig20992:6044..6263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20992 6045..6263 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20992.6072.1prot_H-elongata_contig20992.6072.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20992 6045..6263 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20992.6072.1

>prot_H-elongata_contig20992.6072.1 ID=prot_H-elongata_contig20992.6072.1|Name=mRNA_H-elongata_contig20992.6072.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
FRTQVLDRAVPWSDWYGDRILAEHDFSDANAFRRCTDRLTGFISDLSIPT
DQTFHVHRFARALARGESGVRM*
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mRNA from alignment at H-elongata_contig20992:6045..6263-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20992.6072.1 ID=mRNA_H-elongata_contig20992.6072.1|Name=mRNA_H-elongata_contig20992.6072.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=219bp|location=Sequence derived from alignment at H-elongata_contig20992:6045..6263- (Himanthalia elongata Himel1 dioecious)
TTTCGCACCCAAGTGTTGGATCGAGCGGTGCCGTGGAGCGATTGGTACGG
AGACCGAATCCTGGCGGAGCACGACTTCTCGGACGCGAACGCCTTCCGGA
GGTGTACGGACCGCCTCACCGGGTTCATCAGCGACCTCAGCATCCCAACG
GACCAGACATTTCACGTGCATCGCTTCGCCAGGGCTCTCGCTCGCGGTGA
GTCGGGAGTGCGGATGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig20992:6045..6263-

>mRNA_H-elongata_contig20992.6072.1 ID=mRNA_H-elongata_contig20992.6072.1|Name=mRNA_H-elongata_contig20992.6072.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig20992:6045..6263- (Himanthalia elongata Himel1 dioecious)
TTTCGCACCCAAGTGTTGGATCGAGCGGTGCCGTGGAGCGATTGGTACGG
AGACCGAATCCTGGCGGAGCACGACTTCTCGGACGCGAACGCCTTCCGGA
GGTGTACGGACCGCCTCACCGGGTTCATCAGCGACCTCAGCATCCCAACG
GACCAGACATTTCACGTGCATCGCTTCGCCAGGGCTCTCGCTCGCGGTGA
GTCGGGAGTGCGGATGTGATTTCGCACCCAAGTGTTGGATCGAGCGGTGC
CGTGGAGCGATTGGTACGGAGACCGAATCCTGGCGGAGCACGACTTCTCG
GACGCGAACGCCTTCCGGAGGTGTACGGACCGCCTCACCGGGTTCATCAG
CGACCTCAGCATCCCAACGGACCAGACATTTCACGTGCATCGCTTCGCCA
GGGCTCTCGCTCGCGGTGAGTCGGGAGTGCGGATGTGA
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