mRNA_H-elongata_contig20992.6071.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20992.6071.1
Unique NamemRNA_H-elongata_contig20992.6071.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20992.6071.1 vs. uniprot
Match: A0A6H5K157_9PHAE (Toprim domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K157_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 4.640e-37
Identity = 127/281 (45.20%), Postives = 161/281 (57.30%), Query Frame = 3 
Query:   27 ETLDWVFDDKEAKRVATSKNTDLVLLEVVMVMLKEQAAAKMHAMSVELAGTGDAIAHTMAEAAAAGLLMTQVDHAEPDAGAEVGDLTDGDGSPTDDDGQALLGGAPGRDRRMGVGRKRRSREEAQSEVERLKVRQAELYKLIRDQREEVVAMEDQRRAFTSRLPIVRAESESFRHNQ-QSKVEAAAAPGPSQPSAGGLEPEAGVF------------------HPRREQEGVLAAAKEE--------SMDHLPMVFLDEDQDPEDRLNVYDVETNILAARA 788
            +TLDWVF+  EA+RVA   NTDLVLLEVVMVMLKEQAAAKMH++S+ELA T +AIA TMAEAA A  L     HA     AE         SP    G A + G        GVGR   SR EAQ+EV+RLKVRQ+EL+++I++QREEV  +E +R+AFT RLP VRAE+E+ R  + ++K ++ AA                                    +  R Q+ +    +E         S++ LP  FLDEDQDPED +N+YDVE NI AA A
Sbjct:  832 DTLDWVFERAEAERVAKGANTDLVLLEVVMVMLKEQAAAKMHSLSLELADTSNAIARTMAEAATADFLALDPPHAS----AEPPKTAAAPESP----GVAAVKG-------QGVGR---SRAEAQAEVQRLKVRQSELFEMIQEQREEVTELEARRKAFTKRLPKVRAETEAIRKREARAKRQSLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRYDERGQQQLQQLRREAGGEDGGELSVEDLPYRFLDEDQDPEDGINIYDVEGNIAAAMA 1094
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BLAST of mRNA_H-elongata_contig20992.6071.1 vs. uniprot
Match: D7G3B8_ECTSI (DNA primase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3B8_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 1.580e-28
Identity = 115/288 (39.93%), Postives = 153/288 (53.12%), Query Frame = 3 
Query:   12 EDGVKE-TLDWVFDDKEAKRVATSKNTDLVLLEVVMVMLKEQAAAKMHAMSVELAGTGDAIAHTMAEAAAAGLLMTQVDHAEPDAGAEVGDLTDGDGSPTDDDGQALLGGAPGRDRRMGVGRKRRSREEAQSEVERLKVRQAELYKLIRDQREEVVAMEDQRRAFTSRLPIVRAESESFRHNQ-QSKVEAAAAPGPSQ---------------------------PSAGGLEPEAGVFHPRREQEGVLAAAKEESMDHLPMVFLDEDQDPEDRLNVYDVETNILAARA 788
            ++G KE TLDWVF+  EA+RVA   NTDLVLLEVVMVMLKEQAAAKMH++S+ELA T +AIA TMAEAA A  L        P A  E  +      SP         G A G+                   VERLKVRQ+EL+++I++QREEV   E +R+AFT+RLP VRAE+E+ R  + ++K ++ A                                 P+    +        +  +E       E S++ LP  FLDED++PE+ +N+YDV+ NI AA A
Sbjct:  924 DEGEKEDTLDWVFERAEAERVAKGANTDLVLLEVVMVMLKEQAAAKMHSLSLELADTSNAIARTMAEAATADFLALD----PPQASGEPPETATAPESP---------GVAAGKXXXXXX-----XXXXXXXXVERLKVRQSELFEMIQEQREEVTEFEARRKAFTNRLPKVRAETEAIRKQEARAKRQSMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPADTRYDERXXXXLQQLRREAGGEDEGELSVEDLPYRFLDEDKEPEEGINIYDVDGNIAAAMA 1193
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20992.6071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K157_9PHAE4.640e-3745.20Toprim domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G3B8_ECTSI1.580e-2839.93DNA primase n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20992contigH-elongata_contig20992:2..3309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue1e-16
Seed eggNOG ortholog2880.D7G3B8
EggNOG free text desc.DNA primase catalytic core, N-terminal domain
EggNOG OGs2S0EV@2759,COG0358@1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size1836
Cds size1242
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20992.6071.1prot_H-elongata_contig20992.6071.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20992 483..3196 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930172.964851-UTR-H-elongata_contig20992:1..4821622930172.964851-UTR-H-elongata_contig20992:1..482Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20992 2..482 -
1691679308.4431412-UTR-H-elongata_contig20992:1..4821691679308.4431412-UTR-H-elongata_contig20992:1..482Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20992 2..482 -
1622930173.0511854-UTR-H-elongata_contig20992:3196..33091622930173.0511854-UTR-H-elongata_contig20992:3196..3309Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20992 3197..3309 -
1691679308.4894485-UTR-H-elongata_contig20992:3196..33091691679308.4894485-UTR-H-elongata_contig20992:3196..3309Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20992 3197..3309 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930172.9890924-CDS-H-elongata_contig20992:482..13701622930172.9890924-CDS-H-elongata_contig20992:482..1370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20992 483..1370 -
1691679308.4544501-CDS-H-elongata_contig20992:482..13701691679308.4544501-CDS-H-elongata_contig20992:482..1370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20992 483..1370 -
1622930173.0110571-CDS-H-elongata_contig20992:2576..29091622930173.0110571-CDS-H-elongata_contig20992:2576..2909Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20992 2577..2909 -
1691679308.4691715-CDS-H-elongata_contig20992:2576..29091691679308.4691715-CDS-H-elongata_contig20992:2576..2909Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20992 2577..2909 -
1622930173.0314739-CDS-H-elongata_contig20992:3175..31961622930173.0314739-CDS-H-elongata_contig20992:3175..3196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20992 3176..3196 -
1691679308.480471-CDS-H-elongata_contig20992:3175..31961691679308.480471-CDS-H-elongata_contig20992:3175..3196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20992 3176..3196 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20992.6071.1

>prot_H-elongata_contig20992.6071.1 ID=prot_H-elongata_contig20992.6071.1|Name=mRNA_H-elongata_contig20992.6071.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=414bp
MVMLKEQAAAKMHAMSVELAGTGDAIAHTMAEAAAAGLLMTQVDHAEPDA
GAEVGDLTDGDGSPTDDDGQALLGGAPGRDRRMGVGRKRRSREEAQSEVE
RLKVRQAELYKLIRDQREEVVAMEDQRRAFTSRLPIVRAESESFRHNQQS
KVEAAAAPGPSQPSAGGLEPEAGVFHPRREQEGVLAAAKEESMDHLPMVF
LDEDQDPEDRLNVYDVETNILAARAANAAAAAAACGEGGDGRFLRPEEPQ
LQTSDADISPPPPSYSVHGVASGPCTESRWQSPMQGVHDARDAVNTQDRV
PGALEPRAGSTVAVTTTTFSSEVDRRRLSKKPLGPTSDGKSSQREGVRGG
ADDQNTLSWSSTYAAAVLSTPAGTSMVGPSSTLSEDGERLAREAEEHTEM
LEEEDAFESGWTA*
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mRNA from alignment at H-elongata_contig20992:2..3309-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20992.6071.1 ID=mRNA_H-elongata_contig20992.6071.1|Name=mRNA_H-elongata_contig20992.6071.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3308bp|location=Sequence derived from alignment at H-elongata_contig20992:2..3309- (Himanthalia elongata Himel1 dioecious)
GGGCGGGAAAGGAAGACGGGGTTAAGGAGACTCTGGATTGGGTTTTTGAT
GATAAGGAAGCAAAGCGCGTGGCAACCAGCAAGAACACGGACCTGGTGTT
GCTGGAGGTGGTGATGGTGATGCTCAAGGAGCAGGTAACCAAATGTTGTA
GCCAGCCGACATTCGATTGTATGACTTGCTTGTCTTGAGAAAGAAATAAT
GGCAGGGATTATATGGAACTAATGAAGGAGATGTCGAGGTGTTCTGAACA
AGATGTTGCTGTCCCACTCTTAATATCCTTCGCCCCCTTCCGCTACCGAC
CACAAAACGATTTATATTAGTAGTTCGTTCGCGCATCCACACAACTCCCA
CCCCCTCTTCTTCCCTATGATTTTCCCCGTTCCTCTCAAACGTGACACAG
GCGGCAGCGAAGATGCACGCTATGAGTGTCGAGCTAGCCGGCACCGGTGA
TGCGATCGCCCACACCATGGCGGAGGCCGCAGCTGCGGGCCTCTTGATGA
CCCAGGTCGACCACGCGGAGCCGGATGCTGGTGCTGAGGTCGGTGATCTG
ACCGATGGCGATGGCAGCCCGACCGATGACGATGGTCAGGCGCTGCTGGG
CGGGGCGCCCGGTCGTGATAGACGTATGGGTGTAGGTCGGAAAAGGAGGA
GCAGGGAGGAAGCACAGTCCGAAGTGGAGAGGCTCAAGGTCCGTCAGGCG
GAGCTTTATAAACTGATTCGAGACCAGAGAGAGGTGCGGTGCAGTCTGGC
GAGGTTTAAACTAAAATGTGTTGTGTTTTTGTTTCGTTGGTGCCAACGGC
GTCAAGTTGTTTTTGTGTTTTACCGCGACGTGCAGGAGCAAGGGACGATG
TTTGCTTGTCTTACCCCCCCCCCCACCCCCCCCATCCAATCTTCCCTCTC
TCCCTAACTATCTCTCTATCTATCTTGACTCGTGATTATTATTTTAACAC
ATAAACTCATTAGAACCCTCCCAACATCCGCGCCTTCTCAGCACCATGAT
AGGTGTAGTTCATGGGACCAACTAGCTTTGTGCCCTGCCATCAGTGCAAT
AGTTACGGTGCCTCGGGTATAGTAGTATTCATCATTCGACGTCATCGATA
TTCTTGTCTTTTGCTGGTTTCTGTTCTGTGGACATATTATTATTTTTATT
TATAACAGACTTTGGGCTCATTCTAACTCTCCGAACATCCACGCCTTCTT
GGCACCATAAGTGCAATCCAGGGGACCAACTATCGGGAAGTAGGAATAAG
CAGGTATGTTATGCTTCGTATAACATATATACATATTTTTGCTGCTGTTG
CTCTTGCTGTTGTGGTTGCTTCAGAAGAGGGGGAAGGGAAGAGAGGATAT
GGTGGGGGGGGGGGTAGTTGAGCTTTGTATGTCTTAGCTACTAGGCCAAT
GGCCACGCCTCTTCTTCGGGAAGAGAAAGCGGGGCTTTCGGTGGTTGTCT
TCCTGGAGATTTTTCCCGTTCCGCGTCACCCCGGCGTCAGTTTAATTAAG
TATTAATACAAGTGCATTTTAAAAGTATTGGAACTGTTCCGAAAAGCTCT
TGCGTTTACAGAAAGGTAAATCCCCTTAAGACTCCAGTGTGTGCACGTTC
CCGTTGGCGCATTCTAGCAGGACGGTCGGTACCATGCCGTGTATATCACC
CATGCGGCGGTCGGGCGTGTGCATGCCTCCTCTAGCCGAGAAAGTCCCGC
CACCGGCTTGCAGCGCGAGAGGCTTAAATGGCGCCGATTACTCCCATCTC
CCTGCAAGCTCTTTTCCTATCCAATGACTCGTGTCTTGTTCTTGACGTAT
GGTATCGAACTATTATCGACTTACGTACAATATTAATGTAACACTACACT
GCACTATTGCAGTGTCACACTGTCAACCTTTTGGTTTGTACACCGGTGGT
GGATTAAAGTAACCATTTTCATCTCGCTTCGCGCAACAGGAGGTGGTCGC
CATGGAAGACCAGCGGCGGGCCTTCACGAGCCGCCTTCCCATTGTCAGGG
CTGAGAGCGAGTCCTTCCGTCACAATCAACAGTCTAAGGTGGAAGCCGCC
GCTGCGCCCGGCCCGTCGCAACCTTCCGCGGGTGGTCTTGAGCCAGAGGC
CGGCGTCTTCCACCCCCGACGGGAACAGGAGGGTGTCCTCGCCGCCGCCA
AGGAGGAATCGATGGATCACCTGCCTATGGTGTTTCTCGACGAGGATCAG
GATCCGGAAGATCGGCTCAACGTGTACGACGTCGAGACTAACATTCTCGC
GGCGAGGGCCGCCAACGCCGCTGCAGCTGCCGCAGCCTGCGGGGAAGGAG
GCGACGGTCGATTCCTTCGGCCCGAGGAGCCGCAACTCCAGACCAGCGAC
GCCGATATTTCCCCGCCGCCGCCTTCCTACTCTGTTCATGGGGTGGCGAG
TGGGCCATGTACAGAGTCTCGCTGGCAGTCGCCGATGCAAGGCGTTCATG
ACGCCCGTGACGCCGTAAACACGCAAGATAGAGTGCCCGGTGCGTTGGAA
CCAAGAGCTGGGAGTACAGTAGCGGTGACGACGACGACCTTTTCGAGCGA
AGTTGATCGGCGGAGGCTCTCTAAAAAACCGCTTGGACCAACGTCGGACG
GCAAAAGTAGCCAGCGTGAAGGCGTTCGAGGGGGCGCCGACGACCAAAAC
ACGCTATCTTGGAGTAGCACCTACGCGGCTGCGGTGCTGTCGACGCCGGC
GGGCACGAGCATGGTAGGCCCAAGCTCCACGTTGAGCGAGGACGGGGAGA
GGTTGGCTCGGGAGGCCGAGGAACACACGGAGATGCTCGAAGAAGAGGAT
GCATTCGAATCCGGTTGGACGGCGTGAGGAATCGACTGAGTCGAAGGTGG
ACCTATTTTCCTTGCCTCTCCTTTTCGCGAGACCCATTGTTAGACTATTA
ACACTATAATACTATTAATAGTACTCTTTAATACTAGTACTAGTAATAGT
ACTATTGATAGGGTGACATGCGTGGCATCAGGGTTCGCCAAGTGCTCAGA
AGCAGCACACAACCTGCAGGTTCCTGCTACATACTTAACCCTTTAGGAAC
TGGATTTCAATTTTTGTTTTGAACTTAGTATCTAAAAAACAGGTCGAGTT
GGGGTTAAGCTGGAGACAGCCGATAGAAGTCACCACTTTGCGTCCCCCTT
TTTTGAGTCTCGGGTAACGTCGGGAGCGTCCCCCGAAACGTTGGATTATT
GACCGCGCGTTCTCCGGAGCTTACGCATCCGACTCTCTCGATCATTTACT
CTTGGTTTGCGCAGGGTTGTCCAAAATTTGCGGGGACTGGGGGCAGACGA
TGATCGCC
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Coding sequence (CDS) from alignment at H-elongata_contig20992:2..3309-

>mRNA_H-elongata_contig20992.6071.1 ID=mRNA_H-elongata_contig20992.6071.1|Name=mRNA_H-elongata_contig20992.6071.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2484bp|location=Sequence derived from alignment at H-elongata_contig20992:2..3309- (Himanthalia elongata Himel1 dioecious)
ATGGTGATGCTCAAGGAGCAGATGGTGATGCTCAAGGAGCAGGCGGCAGC
GAAGATGCACGCTATGAGTGTCGAGCTAGCCGGCACCGGTGATGCGATCG
CCCACACCATGGCGGAGGCCGCAGCTGCGGGCCTCTTGATGACCCAGGTC
GACCACGCGGAGCCGGATGCTGGTGCTGAGGTCGGTGATCTGACCGATGG
CGATGGCAGCCCGACCGATGACGATGGTCAGGCGCTGCTGGGCGGGGCGC
CCGGTCGTGATAGACGTATGGGTGTAGGTCGGAAAAGGAGGAGCAGGGAG
GAAGCACAGTCCGAAGTGGAGAGGCTCAAGGTCCGTCAGGCGGAGCTTTA
TAAACTGATTCGAGACCAGAGAGAGGCGGCAGCGAAGATGCACGCTATGA
GTGTCGAGCTAGCCGGCACCGGTGATGCGATCGCCCACACCATGGCGGAG
GCCGCAGCTGCGGGCCTCTTGATGACCCAGGTCGACCACGCGGAGCCGGA
TGCTGGTGCTGAGGTCGGTGATCTGACCGATGGCGATGGCAGCCCGACCG
ATGACGATGGTCAGGCGCTGCTGGGCGGGGCGCCCGGTCGTGATAGACGT
ATGGGTGTAGGTCGGAAAAGGAGGAGCAGGGAGGAAGCACAGTCCGAAGT
GGAGAGGCTCAAGGTCCGTCAGGCGGAGCTTTATAAACTGATTCGAGACC
AGAGAGAGGAGGTGGTCGCCATGGAAGACCAGCGGCGGGCCTTCACGAGC
CGCCTTCCCATTGTCAGGGCTGAGAGCGAGTCCTTCCGTCACAATCAACA
GTCTAAGGTGGAAGCCGCCGCTGCGCCCGGCCCGTCGCAACCTTCCGCGG
GTGGTCTTGAGCCAGAGGCCGGCGTCTTCCACCCCCGACGGGAACAGGAG
GGTGTCCTCGCCGCCGCCAAGGAGGAATCGATGGATCACCTGCCTATGGT
GTTTCTCGACGAGGATCAGGATCCGGAAGATCGGCTCAACGTGTACGACG
TCGAGACTAACATTCTCGCGGCGAGGGCCGCCAACGCCGCTGCAGCTGCC
GCAGCCTGCGGGGAAGGAGGCGACGGTCGATTCCTTCGGCCCGAGGAGCC
GCAACTCCAGACCAGCGACGCCGATATTTCCCCGCCGCCGCCTTCCTACT
CTGTTCATGGGGTGGCGAGTGGGCCATGTACAGAGTCTCGCTGGCAGTCG
CCGATGCAAGGCGTTCATGACGCCCGTGACGCCGTAAACACGCAAGATAG
AGTGCCCGGTGCGTTGGAACCAAGAGCTGGGAGTACAGTAGCGGTGACGA
CGACGACCTTTTCGAGCGAAGTTGATCGGCGGAGGCTCTCTAAAAAACCG
CTTGGACCAACGTCGGACGGCAAAAGTAGCCAGCGTGAAGGCGTTCGAGG
GGGCGCCGACGACCAAAACACGCTATCTTGGAGTAGCACCTACGCGGCTG
CGGTGCTGTCGACGCCGGCGGGCACGAGCATGGTAGGCCCAAGCTCCACG
TTGAGCGAGGACGGGGAGAGGTTGGCTCGGGAGGCCGAGGAACACACGGA
GATGCTCGAAGAAGAGGATGCATTCGAATCCGGTTGGACGGCGTGAGAGG
TGGTCGCCATGGAAGACCAGCGGCGGGCCTTCACGAGCCGCCTTCCCATT
GTCAGGGCTGAGAGCGAGTCCTTCCGTCACAATCAACAGTCTAAGGTGGA
AGCCGCCGCTGCGCCCGGCCCGTCGCAACCTTCCGCGGGTGGTCTTGAGC
CAGAGGCCGGCGTCTTCCACCCCCGACGGGAACAGGAGGGTGTCCTCGCC
GCCGCCAAGGAGGAATCGATGGATCACCTGCCTATGGTGTTTCTCGACGA
GGATCAGGATCCGGAAGATCGGCTCAACGTGTACGACGTCGAGACTAACA
TTCTCGCGGCGAGGGCCGCCAACGCCGCTGCAGCTGCCGCAGCCTGCGGG
GAAGGAGGCGACGGTCGATTCCTTCGGCCCGAGGAGCCGCAACTCCAGAC
CAGCGACGCCGATATTTCCCCGCCGCCGCCTTCCTACTCTGTTCATGGGG
TGGCGAGTGGGCCATGTACAGAGTCTCGCTGGCAGTCGCCGATGCAAGGC
GTTCATGACGCCCGTGACGCCGTAAACACGCAAGATAGAGTGCCCGGTGC
GTTGGAACCAAGAGCTGGGAGTACAGTAGCGGTGACGACGACGACCTTTT
CGAGCGAAGTTGATCGGCGGAGGCTCTCTAAAAAACCGCTTGGACCAACG
TCGGACGGCAAAAGTAGCCAGCGTGAAGGCGTTCGAGGGGGCGCCGACGA
CCAAAACACGCTATCTTGGAGTAGCACCTACGCGGCTGCGGTGCTGTCGA
CGCCGGCGGGCACGAGCATGGTAGGCCCAAGCTCCACGTTGAGCGAGGAC
GGGGAGAGGTTGGCTCGGGAGGCCGAGGAACACACGGAGATGCTCGAAGA
AGAGGATGCATTCGAATCCGGTTGGACGGCGTGA
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