mRNA_H-elongata_contig209912.6070.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig209912.6070.1
Unique NamemRNA_H-elongata_contig209912.6070.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig209912.6070.1 vs. uniprot
Match: A0A6H5LCV9_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCV9_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 4.370e-15
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 1 
Query:    1 GDLKPANFVLVRGSLKLIDFGIAKAISNDTTNISRDSRV 117
            GDLKPANFV V+GSLKLIDFGIAKAISNDTTNISRDSRV
Sbjct:  916 GDLKPANFVFVKGSLKLIDFGIAKAISNDTTNISRDSRV 954
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BLAST of mRNA_H-elongata_contig209912.6070.1 vs. uniprot
Match: D7G1H4_ECTSI (Possibly a dual-specificity PK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1H4_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 4.370e-15
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 1 
Query:    1 GDLKPANFVLVRGSLKLIDFGIAKAISNDTTNISRDSRV 117
            GDLKPANFV V+GSLKLIDFGIAKAISNDTTNISRDSRV
Sbjct:  575 GDLKPANFVFVKGSLKLIDFGIAKAISNDTTNISRDSRV 613
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BLAST of mRNA_H-elongata_contig209912.6070.1 vs. uniprot
Match: A0A843TMP4_COLES (Protein kinase domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843TMP4_COLES)

HSP 1 Score: 70.5 bits (171), Expect = 3.260e-13
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    4 DLKPANFVLVRGSLKLIDFGIAKAISNDTTNISRDSRV 117
            DLKPANF+LVRGSLKLIDFGIAKAIS+DTTNI RDS+V
Sbjct:  117 DLKPANFLLVRGSLKLIDFGIAKAISSDTTNIQRDSQV 154
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BLAST of mRNA_H-elongata_contig209912.6070.1 vs. uniprot
Match: A0A0A9EBM8_ARUDO (Protein kinase domain-containing protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9EBM8_ARUDO)

HSP 1 Score: 69.3 bits (168), Expect = 4.630e-13
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    4 DLKPANFVLVRGSLKLIDFGIAKAISNDTTNISRDSRV 117
            DLKPANF+LVRGSLKLIDFGIAKAI NDTTNI RD++V
Sbjct:   56 DLKPANFMLVRGSLKLIDFGIAKAIMNDTTNIQRDAQV 93
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BLAST of mRNA_H-elongata_contig209912.6070.1 vs. uniprot
Match: A0A218XTU2_PUNGR (Protein kinase domain-containing protein n=5 Tax=Punica granatum TaxID=22663 RepID=A0A218XTU2_PUNGR)

HSP 1 Score: 70.5 bits (171), Expect = 4.720e-13
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    4 DLKPANFVLVRGSLKLIDFGIAKAISNDTTNISRDSRV 117
            DLKPANF+LVRGSLKLIDFGIAKAIS+DTTNI RDS+V
Sbjct:  622 DLKPANFLLVRGSLKLIDFGIAKAISSDTTNIQRDSQV 659
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BLAST of mRNA_H-elongata_contig209912.6070.1 vs. uniprot
Match: UPI001F5DAD74 (serine/threonine-protein kinase MPS1-like n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5DAD74)

HSP 1 Score: 70.5 bits (171), Expect = 4.720e-13
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    4 DLKPANFVLVRGSLKLIDFGIAKAISNDTTNISRDSRV 117
            DLKPANF+LVRGSLKLIDFGIAKAI NDTTNI RDS+V
Sbjct:  591 DLKPANFMLVRGSLKLIDFGIAKAIMNDTTNIQRDSQV 628
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BLAST of mRNA_H-elongata_contig209912.6070.1 vs. uniprot
Match: S8D040_9LAMI (Protein kinase domain-containing protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8D040_9LAMI)

HSP 1 Score: 70.5 bits (171), Expect = 4.720e-13
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    4 DLKPANFVLVRGSLKLIDFGIAKAISNDTTNISRDSRV 117
            DLKPANF+LVRGSLKLIDFGIAKAIS+DTTNI RDS+V
Sbjct:  518 DLKPANFLLVRGSLKLIDFGIAKAISSDTTNIQRDSQV 555
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BLAST of mRNA_H-elongata_contig209912.6070.1 vs. uniprot
Match: I1GP32_BRADI (Protein kinase domain-containing protein n=2 Tax=Brachypodium distachyon TaxID=15368 RepID=I1GP32_BRADI)

HSP 1 Score: 70.5 bits (171), Expect = 4.720e-13
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    4 DLKPANFVLVRGSLKLIDFGIAKAISNDTTNISRDSRV 117
            DLKPANF+LVRGSLKLIDFGIAKAI NDTTNI RDS+V
Sbjct:  522 DLKPANFMLVRGSLKLIDFGIAKAIMNDTTNIQRDSQV 559
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BLAST of mRNA_H-elongata_contig209912.6070.1 vs. uniprot
Match: A0A7I8KUN1_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8KUN1_SPIIN)

HSP 1 Score: 70.5 bits (171), Expect = 4.720e-13
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    4 DLKPANFVLVRGSLKLIDFGIAKAISNDTTNISRDSRV 117
            DLKPANF+LVRGSLKLIDFGIAKAIS+DTTNI RDS+V
Sbjct:  513 DLKPANFLLVRGSLKLIDFGIAKAISSDTTNIQRDSQV 550
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BLAST of mRNA_H-elongata_contig209912.6070.1 vs. uniprot
Match: A0A6A3DXI1_9STRA (Protein kinase domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3DXI1_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 4.950e-13
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    1 GDLKPANFVLVRGSLKLIDFGIAKAISNDTTNISRDSRV 117
            GDLKPANF+ V G+LKLIDFGIAKAISNDTTNI RDS+V
Sbjct:  111 GDLKPANFLFVNGALKLIDFGIAKAISNDTTNIERDSQV 149
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig209912.6070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LCV9_9PHAE4.370e-1594.87Protein kinase domain-containing protein n=1 Tax=E... [more]
D7G1H4_ECTSI4.370e-1594.87Possibly a dual-specificity PK n=1 Tax=Ectocarpus ... [more]
A0A843TMP4_COLES3.260e-1389.47Protein kinase domain-containing protein n=1 Tax=C... [more]
A0A0A9EBM8_ARUDO4.630e-1386.84Protein kinase domain-containing protein n=1 Tax=A... [more]
A0A218XTU2_PUNGR4.720e-1389.47Protein kinase domain-containing protein n=5 Tax=P... [more]
UPI001F5DAD744.720e-1389.47serine/threonine-protein kinase MPS1-like n=2 Tax=... [more]
S8D040_9LAMI4.720e-1389.47Protein kinase domain-containing protein (Fragment... [more]
I1GP32_BRADI4.720e-1389.47Protein kinase domain-containing protein n=2 Tax=B... [more]
A0A7I8KUN1_SPIIN4.720e-1389.47Hypothetical protein n=2 Tax=Spirodela intermedia ... [more]
A0A6A3DXI1_9STRA4.950e-1384.62Protein kinase domain-containing protein n=2 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig209912contigH-elongata_contig209912:2..130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score71.2
Seed ortholog evalue1.3e-10
Seed eggNOG ortholog15368.BRADI1G11020.1
KEGG koko:K08866
KEGG Pathwayko04110,ko04111,map04110,map04111
GOsGO:0000228,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000793,GO:0000794,GO:0003674,GO:0003824,GO:0004672,GO:0004712,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005813,GO:0005815,GO:0005856,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0015630,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0031974,GO:0031981,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044454,GO:0044464,GO:0070013,GO:0071704,GO:0098687,GO:0140096,GO:1901564
EggNOG free text desc.Protein kinase domain
EggNOG OGs37K4V@33090,3GEWU@35493,3IBDA@38820,3KWHY@4447,KOG0596@1,KOG0596@2759
EC2.7.12.1
COG Functional cat.T
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size129
Cds size129
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930172.9007285-CDS-H-elongata_contig209912:1..1301622930172.9007285-CDS-H-elongata_contig209912:1..130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209912 2..130 +
1691679308.431432-CDS-H-elongata_contig209912:1..1301691679308.431432-CDS-H-elongata_contig209912:1..130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209912 2..130 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig209912.6070.1prot_H-elongata_contig209912.6070.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig209912 2..130 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig209912.6070.1

>prot_H-elongata_contig209912.6070.1 ID=prot_H-elongata_contig209912.6070.1|Name=mRNA_H-elongata_contig209912.6070.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
GDLKPANFVLVRGSLKLIDFGIAKAISNDTTNISRDSRVKKK*
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mRNA from alignment at H-elongata_contig209912:2..130+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig209912.6070.1 ID=mRNA_H-elongata_contig209912.6070.1|Name=mRNA_H-elongata_contig209912.6070.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=129bp|location=Sequence derived from alignment at H-elongata_contig209912:2..130+ (Himanthalia elongata Himel1 dioecious)
GGTGACCTCAAGCCAGCGAACTTCGTGCTCGTGCGCGGCTCGTTGAAGCT
GATTGACTTTGGCATCGCCAAGGCCATCTCCAACGACACCACTAACATCT
CGAGGGACTCGAGGGTAAAAAAAAAATGA
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Coding sequence (CDS) from alignment at H-elongata_contig209912:2..130+

>mRNA_H-elongata_contig209912.6070.1 ID=mRNA_H-elongata_contig209912.6070.1|Name=mRNA_H-elongata_contig209912.6070.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at H-elongata_contig209912:2..130+ (Himanthalia elongata Himel1 dioecious)
GGTGACCTCAAGCCAGCGAACTTCGTGCTCGTGCGCGGCTCGTTGAAGCT
GATTGACTTTGGCATCGCCAAGGCCATCTCCAACGACACCACTAACATCT
CGAGGGACTCGAGGGTAAAAAAAAAATGAGGTGACCTCAAGCCAGCGAAC
TTCGTGCTCGTGCGCGGCTCGTTGAAGCTGATTGACTTTGGCATCGCCAA
GGCCATCTCCAACGACACCACTAACATCTCGAGGGACTCGAGGGTAAAAA
AAAAATGA
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