mRNA_H-elongata_contig20988.6067.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20988.6067.1
Unique NamemRNA_H-elongata_contig20988.6067.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20988.6067.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 2.050e-36
Identity = 76/159 (47.80%), Postives = 103/159 (64.78%), Query Frame = 1
Query:    7 CGKLYSGTGVRHDPDRISGLVKMRRSETVGELMECLQAANWIQLSFPNMAKAVSPLKALLERKLKDT-TRTKRVASRKVISEVDWSDELQVAWQSSRELLEDAVHISFRKQDFRVLMFPDTSELFCGGFLTQVPEEDMVSGIPVVDIAHRPLGFVSVGF 480
            CGK+YS   V HDP+R+SGL  MRR ET GELM+ LQA NW++ S P MA+ V PL+  LE+ L    +RTKRVA  + I+    +  L  AW ++++L+  AV +S       VLMFPD S+   G FLTQVP++ +  G+PV D+AH P+GF+S  F
Sbjct:  956 CGKVYSEGQVEHDPERLSGLATMRRPETAGELMQFLQAVNWLRTSLPRMAEVVWPLRVFLEQHLVGAKSRTKRVAENRAIAADALTPALVEAWTAAQDLVARAVALSHPSPGCAVLMFPDASDEHWGSFLTQVPQDQLDRGVPVEDMAHEPMGFLSGTF 1114          
BLAST of mRNA_H-elongata_contig20988.6067.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 5.370e-34
Identity = 68/159 (42.77%), Postives = 104/159 (65.41%), Query Frame = 1
Query:    7 CGKLYSGTGVRHDPDRISGLVKMRRSETVGELMECLQAANWIQLSFPNMAKAVSPLKALLERKLK-DTTRTKRVASRKVISEVDWSDELQVAWQSSRELLEDAVHISFRKQDFRVLMFPDTSELFCGGFLTQVPEEDMVSGIPVVDIAHRPLGFVSVGF 480
            CGK+YS   + HD DR+SGL  +RR ET GELM+ LQA NW++ S P M++ V+PL+  LE  +  +  RTKRVAS + I+   W+  +  +W+ +++++ +AV +        VLMFPD S+   G F+TQVP+ ++ + +PV D++H PLGF+S  F
Sbjct:  858 CGKVYSKGVIEHDRDRLSGLANLRRPETAGELMQFLQAVNWLRTSLPRMSEIVAPLREFLELHMAGNPNRTKRVASNRAIAPDAWTPAMVESWERAQDMVANAVTLYHPVAGKAVLMFPDASDEHWGSFVTQVPQSEVDNNVPVEDMSHEPLGFLSGTF 1016          
BLAST of mRNA_H-elongata_contig20988.6067.1 vs. uniprot
Match: A0A6H5K9E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E0_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.960e-27
Identity = 60/122 (49.18%), Postives = 79/122 (64.75%), Query Frame = 1
Query:    7 CGKLYSGTGVRHDPDRISGLVKMRRSETVGELMECLQAANWIQLSFPNMAKAVSPLKALLERKLKDTTR-TKRVASRKVISEVDWSDELQVAWQSSRELLEDAVHISFRKQDFRVLMFPDTS 369
            CGK+YSG  V HDP R+ GL  MRR ET GELM+ LQA NW++ S P +A+ V PL+ LLE  +    R TKR+AS + I    W+  +  AW S+++L+  AV +S  K+ F VLMFPD S
Sbjct:  784 CGKVYSGGQVAHDPARLQGLADMRRPETAGELMQVLQAVNWLRTSLPRLAEVVEPLRRLLEEHMASAPRRTKRIASNRAIKSEAWTAGMAKAWTSAQDLVAHAVALSHPKEGFAVLMFPDAS 905          
BLAST of mRNA_H-elongata_contig20988.6067.1 vs. uniprot
Match: A0A0J8AZB4_BETVV (RT_RNaseH domain-containing protein n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8AZB4_BETVV)

HSP 1 Score: 97.4 bits (241), Expect = 6.870e-22
Identity = 57/167 (34.13%), Postives = 93/167 (55.69%), Query Frame = 1
Query:    1 LVCGKLYSGTGVRHDPDRISGLVKMRRSETVGELMECLQAANWIQLSFPNMAKAVSPLKALLERKLKDT-TRTKRVASRKVISEVDWSDELQVAWQSSRELLEDAVHISFRKQDFRVLMFPDTSELFCGGFLTQVPEEDMVSGIPVVDIAHRPLGFVSVGFSRVSVS 498
            L CG +YS  G+  DP RI  L       T GELM+ +  A W+  + P+ A+  +PL+ LLE  LK+   R+K+ ASR ++SEV W  E   ++ +  + +++AV +++  +D    +F D S+ F    +TQVP +D+   +P  + +H+PL F S  F   S +
Sbjct:    5 LWCGNIYSSKGISPDPKRIQALQNFPVPATAGELMQFVCVATWLSSAIPDFARKAAPLRQLLEECLKNAPVRSKKFASRILLSEVGWKPEHAESFSTIVDSIKNAVTLAYPSEDLVPCLFTDASKDFWMIVITQVPVQDL--HLPFKEQSHQPLAFCSGAFKGPSTN 169          
BLAST of mRNA_H-elongata_contig20988.6067.1 vs. uniprot
Match: A0A0G4J2M7_PLABS (Reverse transcriptase domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J2M7_PLABS)

HSP 1 Score: 90.5 bits (223), Expect = 2.680e-19
Identity = 47/153 (30.72%), Postives = 81/153 (52.94%), Query Frame = 1
Query:    7 CGKLYSGTGVRHDPDRISGLVKMRRSETVGELMECLQAANWIQLSFPNMAKAVSPLKALLERKLKDTTRTKRVASRKVISEVDWSDELQVAWQSSRELLEDAVHISFRKQDFRVLMFPDTSELFCGGFLTQVPEEDMVSGIPVVDIAHRPLGF 465
            CGK+YSG G+RHDP+RI+ L  M   +TV +L + + A  W++ + P+    + PL+ ++ R  ++  RTK                    ++  R +L + V +++ K+DF+  +F D SE      +TQ+P ED+   +P+ +  H PL F
Sbjct:   62 CGKIYSGNGIRHDPERIAALTSMPEPKTVKDLQQLMWAVGWMRTTIPDYPYIIEPLQEVVGRANEELKRTKST------------------FEKLRAVLVEHVQLAYPKKDFQTCLFTDASEFAWSAVVTQIPMEDIE--LPISEQRHEPLAF 194          
BLAST of mRNA_H-elongata_contig20988.6067.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.880e-18
Identity = 46/124 (37.10%), Postives = 78/124 (62.90%), Query Frame = 1
Query:  112 LQAANWIQLSFPNMAKAVSPLKALLERKLK-DTTRTKRVASRKVISEVDWSDELQVAWQSSRELLEDAVHISFRKQDFRVLMFPDTSELFCGGFLTQVPEEDMVSGIPVVDIAHRPLGFVSVGF 480
            + A NW++ S P M++ V+PL+  LE  +  +  RTKRVAS + I+   W+  +  +W+ +++++ +AV +        VLMFPD S+   G F+TQVP+ ++ + +PV D++H PLGF+S  F
Sbjct:  117 ISAVNWLRTSLPRMSEIVAPLREFLELHMAGNPNRTKRVASNRAIAPDAWTPAMVESWERAQDMVANAVTLYHPVAGKAVLMFPDASDEHWGSFVTQVPQSEVDNNVPVEDMSHEPLGFLSGTF 240          
BLAST of mRNA_H-elongata_contig20988.6067.1 vs. uniprot
Match: A0A6A4ZJH5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4ZJH5_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.690e-18
Identity = 52/160 (32.50%), Postives = 88/160 (55.00%), Query Frame = 1
Query:    7 CGKLYSGTGVRHDPDRISGLVKMRRSETVGELMECLQAANWIQLSFPNMAKAVSPLKALLERKLKDTT-RTKRVASRKVISEVDWSDELQVAWQSSRELLEDAVHISFRKQDFRVLMFPDTSELFCGGFLTQVPEEDMVSGIPVVDIAHRPLGFVSVGFS 483
            CG++ SG+GV+HDP+RI  L  ++   T  +L + + A NW+++S P     V P+  LLE   K    RT++  S+  ++E+ W+D         +E+L  AV ++  K+D  + +F D S++  GG +TQ+P   +   +   +  H PL F+S  FS
Sbjct:  549 CGRIVSGSGVKHDPERIVALQDLKPPVTGQDLQQFICAMNWMRMSIPRYNVVVKPITELLEAVYKAAGGRTRQKVSKVRLAEIGWNDTHAACLAKCKEVLGQAVTLAHPKEDSLICVFADASDMHWGGVVTQIPRGQVDRELESQE--HEPLMFLSGTFS 706          
BLAST of mRNA_H-elongata_contig20988.6067.1 vs. uniprot
Match: A0A6G0WN36_9STRA (RNA-directed DNA polymerase n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WN36_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 9.600e-18
Identity = 57/159 (35.85%), Postives = 82/159 (51.57%), Query Frame = 1
Query:    7 CGKLYSGTGVRHDPDRISGLVKMRRSETVGELMECLQAANWIQLSFPNMAKAVSPLKALLERKLKDT-TRTKRVASRKVISEVDWSDELQVAWQSSRELLEDAVHISFRKQDFRVLMFPDTSELFCGGFLTQVPEEDMVSGIPVVDIAHRPLGFVSVGF 480
            CGKL SG+GVRHDP RI+ L  M    T  +LM+ L A NW++   P   + V+PL A L+R    +  +TK+   + V+    +SD  +  +   +E L  +V ++       V +FPD S  F G  +TQVP   +   I   D  H PL F+S  F
Sbjct:  670 CGKLVSGSGVRHDPGRIAALQSMSLPRTGADLMQFLCAVNWMRSHIPRYNEVVAPLMAALQRVYSQSGLKTKKKLEKFVLPADFFSDAEKTNYDHIKEQLSSSVKLAHHDPSKMVCVFPDASLRFWGAIVTQVPMNQLSLSIDSQD--HEPLAFLSGPF 826          
BLAST of mRNA_H-elongata_contig20988.6067.1 vs. uniprot
Match: A0A6G0WUU6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WUU6_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.720e-17
Identity = 57/159 (35.85%), Postives = 82/159 (51.57%), Query Frame = 1
Query:    7 CGKLYSGTGVRHDPDRISGLVKMRRSETVGELMECLQAANWIQLSFPNMAKAVSPLKALLERKLKDT-TRTKRVASRKVISEVDWSDELQVAWQSSRELLEDAVHISFRKQDFRVLMFPDTSELFCGGFLTQVPEEDMVSGIPVVDIAHRPLGFVSVGF 480
            CGKL SG+GVRHDP RI+ L  M    T  +LM+ L A NW++   P   + V+PL A L+R    +  +TK+   + V+    +SD  +  +   +E L  +V ++       V +FPD S  F G  +TQVP   +   I   D  H PL F+S  F
Sbjct:  262 CGKLVSGSGVRHDPGRIAALQSMSLPRTGADLMQFLCAVNWMRSHIPRYNEVVAPLMAALQRVHSQSGLKTKKKLEKFVLPADFFSDAEKTNYDHIKEQLSSSVKLAHHDPSKMVCVFPDASLRFWGAIVTQVPMNQLSLSIDSQD--HEPLAFLSGPF 418          
BLAST of mRNA_H-elongata_contig20988.6067.1 vs. uniprot
Match: A0A6G0XU41_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XU41_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 8.170e-17
Identity = 55/160 (34.38%), Postives = 85/160 (53.12%), Query Frame = 1
Query:    7 CGKLYSGTGVRHDPDRISGLVKMRRSETVGELMECLQAANWIQLSFPNMAKAVSPLKALLERKLKDTT-RTKRVASRKVISEVDWSDELQVAWQSSRELLEDAVHISFRKQDFRVLMFPDTSELFCGGFLTQVPEEDMVSGIPVVDIAHRPLGFVSVGFS 483
            CG++ SG GV+HDP+RI  L  ++   T  +L + + A NW+++S P     V PL  L+E+       RT++  ++  +SEV W+        S ++ L  AV  +  K D  VL+F D S+L  GG +TQ+P E     +   +  H PL F+S  FS
Sbjct:  796 CGRIVSGNGVKHDPERIKALQDLKVPVTGQDLQQFICAMNWMRMSIPRYNVVVKPLTDLMEKIYALAGGRTRQKVAKIRLSEVGWNASHVDCLTSCKKALGQAVTFAHPKSDKLVLLFADASDLHWGGVVTQIPPEQADRELDAQE--HEPLMFLSGTFS 953          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20988.6067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5A5_9PHAE2.050e-3647.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7F6_9PHAE5.370e-3442.77Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9E0_9PHAE1.960e-2749.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0J8AZB4_BETVV6.870e-2234.13RT_RNaseH domain-containing protein n=1 Tax=Beta v... [more]
A0A0G4J2M7_PLABS2.680e-1930.72Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JCX8_9PHAE1.880e-1837.10Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A4ZJH5_9STRA3.690e-1832.50Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A6G0WN36_9STRA9.600e-1835.85RNA-directed DNA polymerase n=2 Tax=Aphanomyces eu... [more]
A0A6G0WUU6_9STRA1.720e-1735.85Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6G0XU41_9STRA8.170e-1734.38Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20988contigH-elongata_contig20988:2554..3051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue2.6e-14
Seed eggNOG ortholog164328.Phyra87041
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QH3I@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size498
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930172.4827797-CDS-H-elongata_contig20988:2553..30511622930172.4827797-CDS-H-elongata_contig20988:2553..3051Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20988 2554..3051 +
1691679308.2706163-CDS-H-elongata_contig20988:2553..30511691679308.2706163-CDS-H-elongata_contig20988:2553..3051Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20988 2554..3051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20988.6067.1prot_H-elongata_contig20988.6067.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20988 2554..3051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20988.6067.1

>prot_H-elongata_contig20988.6067.1 ID=prot_H-elongata_contig20988.6067.1|Name=mRNA_H-elongata_contig20988.6067.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp
LVCGKLYSGTGVRHDPDRISGLVKMRRSETVGELMECLQAANWIQLSFPN
MAKAVSPLKALLERKLKDTTRTKRVASRKVISEVDWSDELQVAWQSSREL
LEDAVHISFRKQDFRVLMFPDTSELFCGGFLTQVPEEDMVSGIPVVDIAH
RPLGFVSVGFSRVSVS
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mRNA from alignment at H-elongata_contig20988:2554..3051+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20988.6067.1 ID=mRNA_H-elongata_contig20988.6067.1|Name=mRNA_H-elongata_contig20988.6067.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=498bp|location=Sequence derived from alignment at H-elongata_contig20988:2554..3051+ (Himanthalia elongata Himel1 dioecious)
TTGGTGTGTGGTAAGCTGTACTCTGGGACAGGTGTGCGGCATGATCCTGA CCGTATTTCGGGACTGGTCAAGATGCGTCGGTCAGAGACTGTTGGTGAGT TAATGGAGTGTCTGCAAGCGGCGAACTGGATTCAACTGTCTTTCCCTAAT ATGGCTAAGGCCGTATCGCCATTGAAGGCACTATTAGAGCGGAAGCTAAA GGACACCACTCGCACTAAGAGAGTTGCGAGTCGTAAGGTGATATCCGAGG TGGACTGGTCGGACGAACTCCAGGTGGCATGGCAGAGCTCCCGTGAGTTG TTGGAAGATGCGGTGCATATAAGCTTTCGCAAACAGGACTTTCGCGTGCT AATGTTTCCGGACACAAGTGAACTGTTCTGTGGAGGCTTTCTGACGCAAG TTCCTGAGGAGGATATGGTGAGTGGGATTCCGGTGGTGGATATAGCTCAT CGACCATTAGGGTTTGTGAGCGTAGGGTTCTCAAGGGTCTCAGTTTCA
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Coding sequence (CDS) from alignment at H-elongata_contig20988:2554..3051+

>mRNA_H-elongata_contig20988.6067.1 ID=mRNA_H-elongata_contig20988.6067.1|Name=mRNA_H-elongata_contig20988.6067.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at H-elongata_contig20988:2554..3051+ (Himanthalia elongata Himel1 dioecious)
TTGGTGTGTGGTAAGCTGTACTCTGGGACAGGTGTGCGGCATGATCCTGA
CCGTATTTCGGGACTGGTCAAGATGCGTCGGTCAGAGACTGTTGGTGAGT
TAATGGAGTGTCTGCAAGCGGCGAACTGGATTCAACTGTCTTTCCCTAAT
ATGGCTAAGGCCGTATCGCCATTGAAGGCACTATTAGAGCGGAAGCTAAA
GGACACCACTCGCACTAAGAGAGTTGCGAGTCGTAAGGTGATATCCGAGG
TGGACTGGTCGGACGAACTCCAGGTGGCATGGCAGAGCTCCCGTGAGTTG
TTGGAAGATGCGGTGCATATAAGCTTTCGCAAACAGGACTTTCGCGTGCT
AATGTTTCCGGACACAAGTGAACTGTTCTGTGGAGGCTTTCTGACGCAAG
TTCCTGAGGAGGATATGGTGAGTGGGATTCCGGTGGTGGATATAGCTCAT
CGACCATTAGGGTTTGTGAGCGTAGGGTTCTCAAGGGTCTCAGTTTCATT
GGTGTGTGGTAAGCTGTACTCTGGGACAGGTGTGCGGCATGATCCTGACC
GTATTTCGGGACTGGTCAAGATGCGTCGGTCAGAGACTGTTGGTGAGTTA
ATGGAGTGTCTGCAAGCGGCGAACTGGATTCAACTGTCTTTCCCTAATAT
GGCTAAGGCCGTATCGCCATTGAAGGCACTATTAGAGCGGAAGCTAAAGG
ACACCACTCGCACTAAGAGAGTTGCGAGTCGTAAGGTGATATCCGAGGTG
GACTGGTCGGACGAACTCCAGGTGGCATGGCAGAGCTCCCGTGAGTTGTT
GGAAGATGCGGTGCATATAAGCTTTCGCAAACAGGACTTTCGCGTGCTAA
TGTTTCCGGACACAAGTGAACTGTTCTGTGGAGGCTTTCTGACGCAAGTT
CCTGAGGAGGATATGGTGAGTGGGATTCCGGTGGTGGATATAGCTCATCG
ACCATTAGGGTTTGTGAGCGTAGGGTTCTCAAGGGTCTCAGTTTCA
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