mRNA_H-elongata_contig20988.6067.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20988.6067.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 143 bits (360), Expect = 2.050e-36 Identity = 76/159 (47.80%), Postives = 103/159 (64.78%), Query Frame = 1
Query: 7 CGKLYSGTGVRHDPDRISGLVKMRRSETVGELMECLQAANWIQLSFPNMAKAVSPLKALLERKLKDT-TRTKRVASRKVISEVDWSDELQVAWQSSRELLEDAVHISFRKQDFRVLMFPDTSELFCGGFLTQVPEEDMVSGIPVVDIAHRPLGFVSVGF 480
CGK+YS V HDP+R+SGL MRR ET GELM+ LQA NW++ S P MA+ V PL+ LE+ L +RTKRVA + I+ + L AW ++++L+ AV +S VLMFPD S+ G FLTQVP++ + G+PV D+AH P+GF+S F
Sbjct: 956 CGKVYSEGQVEHDPERLSGLATMRRPETAGELMQFLQAVNWLRTSLPRMAEVVWPLRVFLEQHLVGAKSRTKRVAENRAIAADALTPALVEAWTAAQDLVARAVALSHPSPGCAVLMFPDASDEHWGSFLTQVPQDQLDRGVPVEDMAHEPMGFLSGTF 1114
BLAST of mRNA_H-elongata_contig20988.6067.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 136 bits (342), Expect = 5.370e-34 Identity = 68/159 (42.77%), Postives = 104/159 (65.41%), Query Frame = 1
Query: 7 CGKLYSGTGVRHDPDRISGLVKMRRSETVGELMECLQAANWIQLSFPNMAKAVSPLKALLERKLK-DTTRTKRVASRKVISEVDWSDELQVAWQSSRELLEDAVHISFRKQDFRVLMFPDTSELFCGGFLTQVPEEDMVSGIPVVDIAHRPLGFVSVGF 480
CGK+YS + HD DR+SGL +RR ET GELM+ LQA NW++ S P M++ V+PL+ LE + + RTKRVAS + I+ W+ + +W+ +++++ +AV + VLMFPD S+ G F+TQVP+ ++ + +PV D++H PLGF+S F
Sbjct: 858 CGKVYSKGVIEHDRDRLSGLANLRRPETAGELMQFLQAVNWLRTSLPRMSEIVAPLREFLELHMAGNPNRTKRVASNRAIAPDAWTPAMVESWERAQDMVANAVTLYHPVAGKAVLMFPDASDEHWGSFVTQVPQSEVDNNVPVEDMSHEPLGFLSGTF 1016
BLAST of mRNA_H-elongata_contig20988.6067.1 vs. uniprot
Match: A0A6H5K9E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E0_9PHAE) HSP 1 Score: 117 bits (293), Expect = 1.960e-27 Identity = 60/122 (49.18%), Postives = 79/122 (64.75%), Query Frame = 1
Query: 7 CGKLYSGTGVRHDPDRISGLVKMRRSETVGELMECLQAANWIQLSFPNMAKAVSPLKALLERKLKDTTR-TKRVASRKVISEVDWSDELQVAWQSSRELLEDAVHISFRKQDFRVLMFPDTS 369
CGK+YSG V HDP R+ GL MRR ET GELM+ LQA NW++ S P +A+ V PL+ LLE + R TKR+AS + I W+ + AW S+++L+ AV +S K+ F VLMFPD S
Sbjct: 784 CGKVYSGGQVAHDPARLQGLADMRRPETAGELMQVLQAVNWLRTSLPRLAEVVEPLRRLLEEHMASAPRRTKRIASNRAIKSEAWTAGMAKAWTSAQDLVAHAVALSHPKEGFAVLMFPDAS 905
BLAST of mRNA_H-elongata_contig20988.6067.1 vs. uniprot
Match: A0A0J8AZB4_BETVV (RT_RNaseH domain-containing protein n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8AZB4_BETVV) HSP 1 Score: 97.4 bits (241), Expect = 6.870e-22 Identity = 57/167 (34.13%), Postives = 93/167 (55.69%), Query Frame = 1
Query: 1 LVCGKLYSGTGVRHDPDRISGLVKMRRSETVGELMECLQAANWIQLSFPNMAKAVSPLKALLERKLKDT-TRTKRVASRKVISEVDWSDELQVAWQSSRELLEDAVHISFRKQDFRVLMFPDTSELFCGGFLTQVPEEDMVSGIPVVDIAHRPLGFVSVGFSRVSVS 498
L CG +YS G+ DP RI L T GELM+ + A W+ + P+ A+ +PL+ LLE LK+ R+K+ ASR ++SEV W E ++ + + +++AV +++ +D +F D S+ F +TQVP +D+ +P + +H+PL F S F S +
Sbjct: 5 LWCGNIYSSKGISPDPKRIQALQNFPVPATAGELMQFVCVATWLSSAIPDFARKAAPLRQLLEECLKNAPVRSKKFASRILLSEVGWKPEHAESFSTIVDSIKNAVTLAYPSEDLVPCLFTDASKDFWMIVITQVPVQDL--HLPFKEQSHQPLAFCSGAFKGPSTN 169
BLAST of mRNA_H-elongata_contig20988.6067.1 vs. uniprot
Match: A0A0G4J2M7_PLABS (Reverse transcriptase domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J2M7_PLABS) HSP 1 Score: 90.5 bits (223), Expect = 2.680e-19 Identity = 47/153 (30.72%), Postives = 81/153 (52.94%), Query Frame = 1
Query: 7 CGKLYSGTGVRHDPDRISGLVKMRRSETVGELMECLQAANWIQLSFPNMAKAVSPLKALLERKLKDTTRTKRVASRKVISEVDWSDELQVAWQSSRELLEDAVHISFRKQDFRVLMFPDTSELFCGGFLTQVPEEDMVSGIPVVDIAHRPLGF 465
CGK+YSG G+RHDP+RI+ L M +TV +L + + A W++ + P+ + PL+ ++ R ++ RTK ++ R +L + V +++ K+DF+ +F D SE +TQ+P ED+ +P+ + H PL F
Sbjct: 62 CGKIYSGNGIRHDPERIAALTSMPEPKTVKDLQQLMWAVGWMRTTIPDYPYIIEPLQEVVGRANEELKRTKST------------------FEKLRAVLVEHVQLAYPKKDFQTCLFTDASEFAWSAVVTQIPMEDIE--LPISEQRHEPLAF 194
BLAST of mRNA_H-elongata_contig20988.6067.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 1.880e-18 Identity = 46/124 (37.10%), Postives = 78/124 (62.90%), Query Frame = 1
Query: 112 LQAANWIQLSFPNMAKAVSPLKALLERKLK-DTTRTKRVASRKVISEVDWSDELQVAWQSSRELLEDAVHISFRKQDFRVLMFPDTSELFCGGFLTQVPEEDMVSGIPVVDIAHRPLGFVSVGF 480
+ A NW++ S P M++ V+PL+ LE + + RTKRVAS + I+ W+ + +W+ +++++ +AV + VLMFPD S+ G F+TQVP+ ++ + +PV D++H PLGF+S F
Sbjct: 117 ISAVNWLRTSLPRMSEIVAPLREFLELHMAGNPNRTKRVASNRAIAPDAWTPAMVESWERAQDMVANAVTLYHPVAGKAVLMFPDASDEHWGSFVTQVPQSEVDNNVPVEDMSHEPLGFLSGTF 240
BLAST of mRNA_H-elongata_contig20988.6067.1 vs. uniprot
Match: A0A6A4ZJH5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4ZJH5_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 3.690e-18 Identity = 52/160 (32.50%), Postives = 88/160 (55.00%), Query Frame = 1
Query: 7 CGKLYSGTGVRHDPDRISGLVKMRRSETVGELMECLQAANWIQLSFPNMAKAVSPLKALLERKLKDTT-RTKRVASRKVISEVDWSDELQVAWQSSRELLEDAVHISFRKQDFRVLMFPDTSELFCGGFLTQVPEEDMVSGIPVVDIAHRPLGFVSVGFS 483
CG++ SG+GV+HDP+RI L ++ T +L + + A NW+++S P V P+ LLE K RT++ S+ ++E+ W+D +E+L AV ++ K+D + +F D S++ GG +TQ+P + + + H PL F+S FS
Sbjct: 549 CGRIVSGSGVKHDPERIVALQDLKPPVTGQDLQQFICAMNWMRMSIPRYNVVVKPITELLEAVYKAAGGRTRQKVSKVRLAEIGWNDTHAACLAKCKEVLGQAVTLAHPKEDSLICVFADASDMHWGGVVTQIPRGQVDRELESQE--HEPLMFLSGTFS 706
BLAST of mRNA_H-elongata_contig20988.6067.1 vs. uniprot
Match: A0A6G0WN36_9STRA (RNA-directed DNA polymerase n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WN36_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 9.600e-18 Identity = 57/159 (35.85%), Postives = 82/159 (51.57%), Query Frame = 1
Query: 7 CGKLYSGTGVRHDPDRISGLVKMRRSETVGELMECLQAANWIQLSFPNMAKAVSPLKALLERKLKDT-TRTKRVASRKVISEVDWSDELQVAWQSSRELLEDAVHISFRKQDFRVLMFPDTSELFCGGFLTQVPEEDMVSGIPVVDIAHRPLGFVSVGF 480
CGKL SG+GVRHDP RI+ L M T +LM+ L A NW++ P + V+PL A L+R + +TK+ + V+ +SD + + +E L +V ++ V +FPD S F G +TQVP + I D H PL F+S F
Sbjct: 670 CGKLVSGSGVRHDPGRIAALQSMSLPRTGADLMQFLCAVNWMRSHIPRYNEVVAPLMAALQRVYSQSGLKTKKKLEKFVLPADFFSDAEKTNYDHIKEQLSSSVKLAHHDPSKMVCVFPDASLRFWGAIVTQVPMNQLSLSIDSQD--HEPLAFLSGPF 826
BLAST of mRNA_H-elongata_contig20988.6067.1 vs. uniprot
Match: A0A6G0WUU6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WUU6_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 1.720e-17 Identity = 57/159 (35.85%), Postives = 82/159 (51.57%), Query Frame = 1
Query: 7 CGKLYSGTGVRHDPDRISGLVKMRRSETVGELMECLQAANWIQLSFPNMAKAVSPLKALLERKLKDT-TRTKRVASRKVISEVDWSDELQVAWQSSRELLEDAVHISFRKQDFRVLMFPDTSELFCGGFLTQVPEEDMVSGIPVVDIAHRPLGFVSVGF 480
CGKL SG+GVRHDP RI+ L M T +LM+ L A NW++ P + V+PL A L+R + +TK+ + V+ +SD + + +E L +V ++ V +FPD S F G +TQVP + I D H PL F+S F
Sbjct: 262 CGKLVSGSGVRHDPGRIAALQSMSLPRTGADLMQFLCAVNWMRSHIPRYNEVVAPLMAALQRVHSQSGLKTKKKLEKFVLPADFFSDAEKTNYDHIKEQLSSSVKLAHHDPSKMVCVFPDASLRFWGAIVTQVPMNQLSLSIDSQD--HEPLAFLSGPF 418
BLAST of mRNA_H-elongata_contig20988.6067.1 vs. uniprot
Match: A0A6G0XU41_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XU41_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 8.170e-17 Identity = 55/160 (34.38%), Postives = 85/160 (53.12%), Query Frame = 1
Query: 7 CGKLYSGTGVRHDPDRISGLVKMRRSETVGELMECLQAANWIQLSFPNMAKAVSPLKALLERKLKDTT-RTKRVASRKVISEVDWSDELQVAWQSSRELLEDAVHISFRKQDFRVLMFPDTSELFCGGFLTQVPEEDMVSGIPVVDIAHRPLGFVSVGFS 483
CG++ SG GV+HDP+RI L ++ T +L + + A NW+++S P V PL L+E+ RT++ ++ +SEV W+ S ++ L AV + K D VL+F D S+L GG +TQ+P E + + H PL F+S FS
Sbjct: 796 CGRIVSGNGVKHDPERIKALQDLKVPVTGQDLQQFICAMNWMRMSIPRYNVVVKPLTDLMEKIYALAGGRTRQKVAKIRLSEVGWNASHVDCLTSCKKALGQAVTFAHPKSDKLVLLFADASDLHWGGVVTQIPPEQADRELDAQE--HEPLMFLSGTFS 953 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20988.6067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20988.6067.1 >prot_H-elongata_contig20988.6067.1 ID=prot_H-elongata_contig20988.6067.1|Name=mRNA_H-elongata_contig20988.6067.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp LVCGKLYSGTGVRHDPDRISGLVKMRRSETVGELMECLQAANWIQLSFPNback to top mRNA from alignment at H-elongata_contig20988:2554..3051+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20988.6067.1 ID=mRNA_H-elongata_contig20988.6067.1|Name=mRNA_H-elongata_contig20988.6067.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=498bp|location=Sequence derived from alignment at H-elongata_contig20988:2554..3051+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20988:2554..3051+ >mRNA_H-elongata_contig20988.6067.1 ID=mRNA_H-elongata_contig20988.6067.1|Name=mRNA_H-elongata_contig20988.6067.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at H-elongata_contig20988:2554..3051+ (Himanthalia elongata Himel1 dioecious)back to top |