mRNA_H-elongata_contig20988.6066.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20988.6066.1
Unique NamemRNA_H-elongata_contig20988.6066.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20988.6066.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.210e-17
Identity = 42/94 (44.68%), Postives = 57/94 (60.64%), Query Frame = 1
Query:    4 TVDLNQGYWHMPLAANSQGLFMFVMQKGLYTPTRMPRGVMNATSYFQGTLERTLGGLVRRVCLVHVDDVIIWGWNIWELMDPFLWVVKKSMEIG 285
            ++DL Q YW  PLA  +Q +F      GLYTP R+P+G++NATSYFQ TL R L GL    C V VDDV+ WG +  +L+D    ++ +    G
Sbjct:  848 SLDLLQWYWQCPLAPEAQEIFTIATPGGLYTPKRVPQGILNATSYFQATLTRILDGLN---CFVWVDDVVYWGMDKDDLLDTLDLILDRLEGAG 938          
BLAST of mRNA_H-elongata_contig20988.6066.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 2.710e-16
Identity = 38/94 (40.43%), Postives = 59/94 (62.77%), Query Frame = 1
Query:    4 TVDLNQGYWHMPLAANSQGLFMFVMQKGLYTPTRMPRGVMNATSYFQGTLERTLGGLVRRVCLVHVDDVIIWGWNIWELMDPFLWVVKKSMEIG 285
            ++D+ QGYW MPLA  +Q +F  +   GLY+P R+P+GV+NATSY+QGT+   L  L    C+V VDD++ WG    +L++    ++ +    G
Sbjct:  750 SLDMLQGYWGMPLAPEAQEIFTMIGPGGLYSPERVPQGVLNATSYYQGTMNSILHDLN---CIVWVDDIVYWGETEEDLLNTLDLILARFEHHG 840          
BLAST of mRNA_H-elongata_contig20988.6066.1 vs. uniprot
Match: A0A225VG15_9STRA (RNA-directed DNA polymerase (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VG15_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.480e-13
Identity = 34/91 (37.36%), Postives = 55/91 (60.44%), Query Frame = 1
Query:   10 DLNQGYWHMPLAANSQGLFMFVMQKGLYTPTRMPRGVMNATSYFQGTLERTLGGLVRRVCLVHVDDVIIWGWNIWELMDPFLWVVKKSMEI 282
            D ++G+W MPL  NSQ +F FV + G++TPTR+P+G  ++  +FQ  +   L  L+ R  LV +DDV+++     +  D FL  +K+   I
Sbjct:  585 DFHKGFWQMPLHPNSQEMFSFVTEDGVFTPTRVPQGASDSAVHFQAQMNEVLKDLLFRSVLVWIDDVLLYA----QSADEFLANLKRFFTI 671          
BLAST of mRNA_H-elongata_contig20988.6066.1 vs. uniprot
Match: A0A8J1LY82_XENLA (Ribonuclease H n=1 Tax=Xenopus laevis TaxID=8355 RepID=A0A8J1LY82_XENLA)

HSP 1 Score: 73.2 bits (178), Expect = 4.760e-13
Identity = 33/93 (35.48%), Postives = 54/93 (58.06%), Query Frame = 1
Query:    7 VDLNQGYWHMPLAANSQGLFMFVMQKGLYTPTRMPRGVMNATSYFQGTLERTLGGLVRRVCLVHVDDVIIWGWNIWELMDPFLWVVKKSMEIG 285
            +DL  GY+ +P++   Q    F+   G Y  TRMP+G+  A + FQ  +E+ LG L  R CLV++DD+I++G  + E  +  + V+ +  E G
Sbjct:  855 MDLRSGYYQVPMSPEDQEKTAFICPLGFYQFTRMPQGICGAPATFQRLMEKVLGDLCPRECLVYLDDIIVFGSTLEEHHERLIRVIDRLQEEG 947          
BLAST of mRNA_H-elongata_contig20988.6066.1 vs. uniprot
Match: A0A8J0TVV6_XENLA (Ribonuclease H n=1 Tax=Xenopus laevis TaxID=8355 RepID=A0A8J0TVV6_XENLA)

HSP 1 Score: 73.2 bits (178), Expect = 4.790e-13
Identity = 33/93 (35.48%), Postives = 54/93 (58.06%), Query Frame = 1
Query:    7 VDLNQGYWHMPLAANSQGLFMFVMQKGLYTPTRMPRGVMNATSYFQGTLERTLGGLVRRVCLVHVDDVIIWGWNIWELMDPFLWVVKKSMEIG 285
            +DL  GY+ +P++   Q    F+   G Y  TRMP+G+  A + FQ  +E+ LG L  R CLV++DD+I++G  + E  +  + V+ +  E G
Sbjct:  751 MDLRSGYYQVPMSPEDQEKTAFICPLGFYQFTRMPQGICGAPATFQRLMEKVLGDLCPRECLVYLDDIIVFGSTLEEHHERLIRVIDRLQEEG 843          
BLAST of mRNA_H-elongata_contig20988.6066.1 vs. uniprot
Match: A0A803JGZ8_XENTR (Ribonuclease H n=5 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A803JGZ8_XENTR)

HSP 1 Score: 72.8 bits (177), Expect = 6.550e-13
Identity = 33/93 (35.48%), Postives = 53/93 (56.99%), Query Frame = 1
Query:    7 VDLNQGYWHMPLAANSQGLFMFVMQKGLYTPTRMPRGVMNATSYFQGTLERTLGGLVRRVCLVHVDDVIIWGWNIWELMDPFLWVVKKSMEIG 285
            +DL  GY+ +P+    Q    F+   G Y  TRMP+G+  A + FQ  +E+ LG L  R CLV++DD+I++G  + E  +  + V+ +  E G
Sbjct:  856 MDLRSGYYQVPMCPEDQEKTAFICPLGFYQFTRMPQGICGAPATFQRLMEKVLGDLCPRECLVYLDDIIVFGSTLEEHHERLIRVIDRLQEEG 948          
BLAST of mRNA_H-elongata_contig20988.6066.1 vs. uniprot
Match: A0A225WG09_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WG09_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 8.730e-13
Identity = 28/71 (39.44%), Postives = 49/71 (69.01%), Query Frame = 1
Query:   10 DLNQGYWHMPLAANSQGLFMFVMQKGLYTPTRMPRGVMNATSYFQGTLERTLGGLVRRVCLVHVDDVIIWG 222
            DL +G+W +PLA +SQ +F     +G++TPTR+P+G ++A  +FQ T++   G ++    LV+VDDV+++ 
Sbjct:  133 DLFKGFWQLPLAEDSQEVFSIKTDEGVFTPTRLPQGTVDAAMHFQSTMQEVFGDMMNHNLLVYVDDVVLYA 203          
BLAST of mRNA_H-elongata_contig20988.6066.1 vs. uniprot
Match: A0A225V0T6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V0T6_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.030e-12
Identity = 35/92 (38.04%), Postives = 57/92 (61.96%), Query Frame = 1
Query:   10 DLNQGYWHMPLAANSQGLFMFVMQKGLYTPTRMPRGVMNATSYFQGTLERTLGGLVRRVCLVHVDDVIIWGWNIWELMDPFLWVVKKSMEIG 285
            D  +G+W +PL+ N Q L  ++M KG++TPTR+ +   +AT +FQ T+E  +G LV +  +V +DD++++     ELMD    V+ K  E G
Sbjct:   30 DFLKGFWQLPLS-NKQFL-SYMMDKGIFTPTRVSQVSADATLHFQSTVEMVIGHLVNKCVIVWIDDLLVFADTQEELMDSIEAVLTKLDEYG 119          
BLAST of mRNA_H-elongata_contig20988.6066.1 vs. uniprot
Match: A0A1B8XTF4_XENTR (Ribonuclease H n=1 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A1B8XTF4_XENTR)

HSP 1 Score: 71.6 bits (174), Expect = 1.610e-12
Identity = 33/93 (35.48%), Postives = 54/93 (58.06%), Query Frame = 1
Query:    7 VDLNQGYWHMPLAANSQGLFMFVMQKGLYTPTRMPRGVMNATSYFQGTLERTLGGLVRRVCLVHVDDVIIWGWNIWELMDPFLWVVKKSMEIG 285
            +DL  GY+ +P+A+  Q    F+   G Y  TRMP+G+  A + FQ  +E+ LG L  R CLV++DD+I++G  + E     + V+ + +  G
Sbjct:   67 MDLRSGYYQVPMASEDQEKTAFICPLGFYQFTRMPQGICGAPATFQRLMEKMLGDLSPRECLVYLDDIIVFGTTLEEHEQRLMNVIDRLIAEG 159          
BLAST of mRNA_H-elongata_contig20988.6066.1 vs. uniprot
Match: A0A803K659_XENTR (Ribonuclease H n=1 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A803K659_XENTR)

HSP 1 Score: 71.6 bits (174), Expect = 1.630e-12
Identity = 33/93 (35.48%), Postives = 54/93 (58.06%), Query Frame = 1
Query:    7 VDLNQGYWHMPLAANSQGLFMFVMQKGLYTPTRMPRGVMNATSYFQGTLERTLGGLVRRVCLVHVDDVIIWGWNIWELMDPFLWVVKKSMEIG 285
            +DL  GY+ +P+A+  Q    F+   G Y  TRMP+G+  A + FQ  +E+ LG L  R CLV++DD+I++G  + E     + V+ + +  G
Sbjct:  330 MDLRSGYYQVPMASEDQEKTAFICPLGFYQFTRMPQGICGAPATFQRLMEKMLGDLSPRECLVYLDDIIVFGTTLEEHEQRLMNVIDRLIAEG 422          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20988.6066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5A5_9PHAE1.210e-1744.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7F6_9PHAE2.710e-1640.43Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A225VG15_9STRA3.480e-1337.36RNA-directed DNA polymerase (Fragment) n=1 Tax=Phy... [more]
A0A8J1LY82_XENLA4.760e-1335.48Ribonuclease H n=1 Tax=Xenopus laevis TaxID=8355 R... [more]
A0A8J0TVV6_XENLA4.790e-1335.48Ribonuclease H n=1 Tax=Xenopus laevis TaxID=8355 R... [more]
A0A803JGZ8_XENTR6.550e-1335.48Ribonuclease H n=5 Tax=Xenopus tropicalis TaxID=83... [more]
A0A225WG09_9STRA8.730e-1339.44Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A225V0T6_9STRA1.030e-1238.04Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A1B8XTF4_XENTR1.610e-1235.48Ribonuclease H n=1 Tax=Xenopus tropicalis TaxID=83... [more]
A0A803K659_XENTR1.630e-1235.48Ribonuclease H n=1 Tax=Xenopus tropicalis TaxID=83... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20988contigH-elongata_contig20988:2222..2506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue1.3e-10
Seed eggNOG ortholog164328.Phyra85982
EggNOG free text desc.transposition
EggNOG OGs2RRYP@2759,3QHSD@4776,COG2801@1
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size285
Cds size285
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930172.4381623-CDS-H-elongata_contig20988:2221..25061622930172.4381623-CDS-H-elongata_contig20988:2221..2506Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20988 2222..2506 +
1691679308.2500072-CDS-H-elongata_contig20988:2221..25061691679308.2500072-CDS-H-elongata_contig20988:2221..2506Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20988 2222..2506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20988.6066.1prot_H-elongata_contig20988.6066.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20988 2222..2506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20988.6066.1

>prot_H-elongata_contig20988.6066.1 ID=prot_H-elongata_contig20988.6066.1|Name=mRNA_H-elongata_contig20988.6066.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
MTVDLNQGYWHMPLAANSQGLFMFVMQKGLYTPTRMPRGVMNATSYFQGT
LERTLGGLVRRVCLVHVDDVIIWGWNIWELMDPFLWVVKKSMEIG
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mRNA from alignment at H-elongata_contig20988:2222..2506+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20988.6066.1 ID=mRNA_H-elongata_contig20988.6066.1|Name=mRNA_H-elongata_contig20988.6066.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=285bp|location=Sequence derived from alignment at H-elongata_contig20988:2222..2506+ (Himanthalia elongata Himel1 dioecious)
ATGACGGTGGATTTGAACCAAGGTTACTGGCATATGCCGCTGGCTGCAAA TTCGCAAGGACTATTCATGTTTGTGATGCAGAAGGGTTTATACACGCCGA CGCGAATGCCCCGAGGTGTGATGAATGCAACCTCGTACTTCCAGGGAACG CTGGAGAGGACGCTCGGTGGCTTGGTTCGAAGGGTCTGTCTGGTGCATGT GGATGACGTCATAATTTGGGGGTGGAACATCTGGGAGTTGATGGATCCCT TCTTGTGGGTAGTGAAGAAAAGTATGGAGATTGGC
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Coding sequence (CDS) from alignment at H-elongata_contig20988:2222..2506+

>mRNA_H-elongata_contig20988.6066.1 ID=mRNA_H-elongata_contig20988.6066.1|Name=mRNA_H-elongata_contig20988.6066.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig20988:2222..2506+ (Himanthalia elongata Himel1 dioecious)
ATGACGGTGGATTTGAACCAAGGTTACTGGCATATGCCGCTGGCTGCAAA
TTCGCAAGGACTATTCATGTTTGTGATGCAGAAGGGTTTATACACGCCGA
CGCGAATGCCCCGAGGTGTGATGAATGCAACCTCGTACTTCCAGGGAACG
CTGGAGAGGACGCTCGGTGGCTTGGTTCGAAGGGTCTGTCTGGTGCATGT
GGATGACGTCATAATTTGGGGGTGGAACATCTGGGAGTTGATGGATCCCT
TCTTGTGGGTAGTGAAGAAAAGTATGGAGATTGGCATGACGGTGGATTTG
AACCAAGGTTACTGGCATATGCCGCTGGCTGCAAATTCGCAAGGACTATT
CATGTTTGTGATGCAGAAGGGTTTATACACGCCGACGCGAATGCCCCGAG
GTGTGATGAATGCAACCTCGTACTTCCAGGGAACGCTGGAGAGGACGCTC
GGTGGCTTGGTTCGAAGGGTCTGTCTGGTGCATGTGGATGACGTCATAAT
TTGGGGGTGGAACATCTGGGAGTTGATGGATCCCTTCTTGTGGGTAGTGA
AGAAAAGTATGGAGATTGGC
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