mRNA_H-elongata_contig20988.6066.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20988.6066.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 1.210e-17 Identity = 42/94 (44.68%), Postives = 57/94 (60.64%), Query Frame = 1
Query: 4 TVDLNQGYWHMPLAANSQGLFMFVMQKGLYTPTRMPRGVMNATSYFQGTLERTLGGLVRRVCLVHVDDVIIWGWNIWELMDPFLWVVKKSMEIG 285
++DL Q YW PLA +Q +F GLYTP R+P+G++NATSYFQ TL R L GL C V VDDV+ WG + +L+D ++ + G
Sbjct: 848 SLDLLQWYWQCPLAPEAQEIFTIATPGGLYTPKRVPQGILNATSYFQATLTRILDGLN---CFVWVDDVVYWGMDKDDLLDTLDLILDRLEGAG 938
BLAST of mRNA_H-elongata_contig20988.6066.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 2.710e-16 Identity = 38/94 (40.43%), Postives = 59/94 (62.77%), Query Frame = 1
Query: 4 TVDLNQGYWHMPLAANSQGLFMFVMQKGLYTPTRMPRGVMNATSYFQGTLERTLGGLVRRVCLVHVDDVIIWGWNIWELMDPFLWVVKKSMEIG 285
++D+ QGYW MPLA +Q +F + GLY+P R+P+GV+NATSY+QGT+ L L C+V VDD++ WG +L++ ++ + G
Sbjct: 750 SLDMLQGYWGMPLAPEAQEIFTMIGPGGLYSPERVPQGVLNATSYYQGTMNSILHDLN---CIVWVDDIVYWGETEEDLLNTLDLILARFEHHG 840
BLAST of mRNA_H-elongata_contig20988.6066.1 vs. uniprot
Match: A0A225VG15_9STRA (RNA-directed DNA polymerase (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VG15_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 3.480e-13 Identity = 34/91 (37.36%), Postives = 55/91 (60.44%), Query Frame = 1
Query: 10 DLNQGYWHMPLAANSQGLFMFVMQKGLYTPTRMPRGVMNATSYFQGTLERTLGGLVRRVCLVHVDDVIIWGWNIWELMDPFLWVVKKSMEI 282
D ++G+W MPL NSQ +F FV + G++TPTR+P+G ++ +FQ + L L+ R LV +DDV+++ + D FL +K+ I
Sbjct: 585 DFHKGFWQMPLHPNSQEMFSFVTEDGVFTPTRVPQGASDSAVHFQAQMNEVLKDLLFRSVLVWIDDVLLYA----QSADEFLANLKRFFTI 671
BLAST of mRNA_H-elongata_contig20988.6066.1 vs. uniprot
Match: A0A8J1LY82_XENLA (Ribonuclease H n=1 Tax=Xenopus laevis TaxID=8355 RepID=A0A8J1LY82_XENLA) HSP 1 Score: 73.2 bits (178), Expect = 4.760e-13 Identity = 33/93 (35.48%), Postives = 54/93 (58.06%), Query Frame = 1
Query: 7 VDLNQGYWHMPLAANSQGLFMFVMQKGLYTPTRMPRGVMNATSYFQGTLERTLGGLVRRVCLVHVDDVIIWGWNIWELMDPFLWVVKKSMEIG 285
+DL GY+ +P++ Q F+ G Y TRMP+G+ A + FQ +E+ LG L R CLV++DD+I++G + E + + V+ + E G
Sbjct: 855 MDLRSGYYQVPMSPEDQEKTAFICPLGFYQFTRMPQGICGAPATFQRLMEKVLGDLCPRECLVYLDDIIVFGSTLEEHHERLIRVIDRLQEEG 947
BLAST of mRNA_H-elongata_contig20988.6066.1 vs. uniprot
Match: A0A8J0TVV6_XENLA (Ribonuclease H n=1 Tax=Xenopus laevis TaxID=8355 RepID=A0A8J0TVV6_XENLA) HSP 1 Score: 73.2 bits (178), Expect = 4.790e-13 Identity = 33/93 (35.48%), Postives = 54/93 (58.06%), Query Frame = 1
Query: 7 VDLNQGYWHMPLAANSQGLFMFVMQKGLYTPTRMPRGVMNATSYFQGTLERTLGGLVRRVCLVHVDDVIIWGWNIWELMDPFLWVVKKSMEIG 285
+DL GY+ +P++ Q F+ G Y TRMP+G+ A + FQ +E+ LG L R CLV++DD+I++G + E + + V+ + E G
Sbjct: 751 MDLRSGYYQVPMSPEDQEKTAFICPLGFYQFTRMPQGICGAPATFQRLMEKVLGDLCPRECLVYLDDIIVFGSTLEEHHERLIRVIDRLQEEG 843
BLAST of mRNA_H-elongata_contig20988.6066.1 vs. uniprot
Match: A0A803JGZ8_XENTR (Ribonuclease H n=5 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A803JGZ8_XENTR) HSP 1 Score: 72.8 bits (177), Expect = 6.550e-13 Identity = 33/93 (35.48%), Postives = 53/93 (56.99%), Query Frame = 1
Query: 7 VDLNQGYWHMPLAANSQGLFMFVMQKGLYTPTRMPRGVMNATSYFQGTLERTLGGLVRRVCLVHVDDVIIWGWNIWELMDPFLWVVKKSMEIG 285
+DL GY+ +P+ Q F+ G Y TRMP+G+ A + FQ +E+ LG L R CLV++DD+I++G + E + + V+ + E G
Sbjct: 856 MDLRSGYYQVPMCPEDQEKTAFICPLGFYQFTRMPQGICGAPATFQRLMEKVLGDLCPRECLVYLDDIIVFGSTLEEHHERLIRVIDRLQEEG 948
BLAST of mRNA_H-elongata_contig20988.6066.1 vs. uniprot
Match: A0A225WG09_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WG09_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 8.730e-13 Identity = 28/71 (39.44%), Postives = 49/71 (69.01%), Query Frame = 1
Query: 10 DLNQGYWHMPLAANSQGLFMFVMQKGLYTPTRMPRGVMNATSYFQGTLERTLGGLVRRVCLVHVDDVIIWG 222
DL +G+W +PLA +SQ +F +G++TPTR+P+G ++A +FQ T++ G ++ LV+VDDV+++
Sbjct: 133 DLFKGFWQLPLAEDSQEVFSIKTDEGVFTPTRLPQGTVDAAMHFQSTMQEVFGDMMNHNLLVYVDDVVLYA 203
BLAST of mRNA_H-elongata_contig20988.6066.1 vs. uniprot
Match: A0A225V0T6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V0T6_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 1.030e-12 Identity = 35/92 (38.04%), Postives = 57/92 (61.96%), Query Frame = 1
Query: 10 DLNQGYWHMPLAANSQGLFMFVMQKGLYTPTRMPRGVMNATSYFQGTLERTLGGLVRRVCLVHVDDVIIWGWNIWELMDPFLWVVKKSMEIG 285
D +G+W +PL+ N Q L ++M KG++TPTR+ + +AT +FQ T+E +G LV + +V +DD++++ ELMD V+ K E G
Sbjct: 30 DFLKGFWQLPLS-NKQFL-SYMMDKGIFTPTRVSQVSADATLHFQSTVEMVIGHLVNKCVIVWIDDLLVFADTQEELMDSIEAVLTKLDEYG 119
BLAST of mRNA_H-elongata_contig20988.6066.1 vs. uniprot
Match: A0A1B8XTF4_XENTR (Ribonuclease H n=1 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A1B8XTF4_XENTR) HSP 1 Score: 71.6 bits (174), Expect = 1.610e-12 Identity = 33/93 (35.48%), Postives = 54/93 (58.06%), Query Frame = 1
Query: 7 VDLNQGYWHMPLAANSQGLFMFVMQKGLYTPTRMPRGVMNATSYFQGTLERTLGGLVRRVCLVHVDDVIIWGWNIWELMDPFLWVVKKSMEIG 285
+DL GY+ +P+A+ Q F+ G Y TRMP+G+ A + FQ +E+ LG L R CLV++DD+I++G + E + V+ + + G
Sbjct: 67 MDLRSGYYQVPMASEDQEKTAFICPLGFYQFTRMPQGICGAPATFQRLMEKMLGDLSPRECLVYLDDIIVFGTTLEEHEQRLMNVIDRLIAEG 159
BLAST of mRNA_H-elongata_contig20988.6066.1 vs. uniprot
Match: A0A803K659_XENTR (Ribonuclease H n=1 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A803K659_XENTR) HSP 1 Score: 71.6 bits (174), Expect = 1.630e-12 Identity = 33/93 (35.48%), Postives = 54/93 (58.06%), Query Frame = 1
Query: 7 VDLNQGYWHMPLAANSQGLFMFVMQKGLYTPTRMPRGVMNATSYFQGTLERTLGGLVRRVCLVHVDDVIIWGWNIWELMDPFLWVVKKSMEIG 285
+DL GY+ +P+A+ Q F+ G Y TRMP+G+ A + FQ +E+ LG L R CLV++DD+I++G + E + V+ + + G
Sbjct: 330 MDLRSGYYQVPMASEDQEKTAFICPLGFYQFTRMPQGICGAPATFQRLMEKMLGDLSPRECLVYLDDIIVFGTTLEEHEQRLMNVIDRLIAEG 422 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20988.6066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20988.6066.1 >prot_H-elongata_contig20988.6066.1 ID=prot_H-elongata_contig20988.6066.1|Name=mRNA_H-elongata_contig20988.6066.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp MTVDLNQGYWHMPLAANSQGLFMFVMQKGLYTPTRMPRGVMNATSYFQGTback to top mRNA from alignment at H-elongata_contig20988:2222..2506+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20988.6066.1 ID=mRNA_H-elongata_contig20988.6066.1|Name=mRNA_H-elongata_contig20988.6066.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=285bp|location=Sequence derived from alignment at H-elongata_contig20988:2222..2506+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20988:2222..2506+ >mRNA_H-elongata_contig20988.6066.1 ID=mRNA_H-elongata_contig20988.6066.1|Name=mRNA_H-elongata_contig20988.6066.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig20988:2222..2506+ (Himanthalia elongata Himel1 dioecious)back to top |