mRNA_H-elongata_contig209793.6064.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig209793.6064.1 vs. uniprot
Match: D7FHM9_ECTSI (ThiF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM9_ECTSI) HSP 1 Score: 94.7 bits (234), Expect = 4.010e-22 Identity = 42/55 (76.36%), Postives = 52/55 (94.55%), Query Frame = 1
Query: 1 RGQALMAREAVLKFNPQARIVAHHGNVKDPKFGLPFIQKFDIVLNALDNVDARRY 165
+ ++LMAREAVLKFNP+ARIVAHHGNVK+ KFG+ FI+KFD+VLNALDN+DARR+
Sbjct: 74 KSKSLMAREAVLKFNPEARIVAHHGNVKEAKFGMAFIRKFDLVLNALDNIDARRH 128
BLAST of mRNA_H-elongata_contig209793.6064.1 vs. uniprot
Match: A0A6H5JLI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLI2_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 2.390e-20 Identity = 41/55 (74.55%), Postives = 51/55 (92.73%), Query Frame = 1
Query: 1 RGQALMAREAVLKFNPQARIVAHHGNVKDPKFGLPFIQKFDIVLNALDNVDARRY 165
+ ++LMAREAVLKFNP+ARIVAHHGNVK+ KFG+ FI+KF +VLNALDN+DARR+
Sbjct: 83 KSKSLMAREAVLKFNPEARIVAHHGNVKEAKFGMAFIKKFHLVLNALDNIDARRH 137
BLAST of mRNA_H-elongata_contig209793.6064.1 vs. uniprot
Match: A0A7S0N1S5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0N1S5_9CRYP) HSP 1 Score: 77.8 bits (190), Expect = 3.750e-17 Identity = 35/57 (61.40%), Postives = 46/57 (80.70%), Query Frame = 1
Query: 1 RGQALMAREAVLKFNPQAR--IVAHHGNVKDPKFGLPFIQKFDIVLNALDNVDARRY 165
+ +AL+A E V KFNP A+ I+AHHGN+KD KFG F+QKFD+V NALDN++ARR+
Sbjct: 12 KSKALVAAEQVKKFNPSAKLQIIAHHGNIKDKKFGADFMQKFDLVFNALDNIEARRH 68
BLAST of mRNA_H-elongata_contig209793.6064.1 vs. uniprot
Match: A0A7S2XVK5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVK5_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 3.870e-17 Identity = 34/53 (64.15%), Postives = 44/53 (83.02%), Query Frame = 1
Query: 7 QALMAREAVLKFNPQARIVAHHGNVKDPKFGLPFIQKFDIVLNALDNVDARRY 165
+A +ARE+VLK+ P A ++AHHGN+K KFGL F ++FD VLNALDNVDARR+
Sbjct: 20 KAQVARESVLKYCPDANVIAHHGNIKTSKFGLSFFKRFDAVLNALDNVDARRH 72
BLAST of mRNA_H-elongata_contig209793.6064.1 vs. uniprot
Match: A0A812MCX9_9DINO (Uba2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812MCX9_9DINO) HSP 1 Score: 75.9 bits (185), Expect = 3.890e-16 Identity = 30/53 (56.60%), Postives = 44/53 (83.02%), Query Frame = 1
Query: 7 QALMAREAVLKFNPQARIVAHHGNVKDPKFGLPFIQKFDIVLNALDNVDARRY 165
++++A++ V KFNP A++ AHHGN+KD KFG+ + FDIV+NALDNV+ARR+
Sbjct: 35 KSVVAKDVVSKFNPDAQVTAHHGNIKDAKFGMDYFANFDIVMNALDNVEARRH 87
BLAST of mRNA_H-elongata_contig209793.6064.1 vs. uniprot
Match: A0A7S2RLT8_9STRA (SUMO-activating enzyme subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLT8_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 6.950e-16 Identity = 32/53 (60.38%), Postives = 46/53 (86.79%), Query Frame = 1
Query: 7 QALMAREAVLKFNPQARIVAHHGNVKDPKFGLPFIQKFDIVLNALDNVDARRY 165
++++ARE LKFNP A+IVAHHGN+KD +FG+ + ++F +V+NALDNVDARR+
Sbjct: 15 KSVVAREMALKFNPDAKIVAHHGNIKDSQFGMDYFKQFSVVMNALDNVDARRH 67
BLAST of mRNA_H-elongata_contig209793.6064.1 vs. uniprot
Match: A0A1Y1HTF5_KLENI (SUMO-activating enzyme subunit n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HTF5_KLENI) HSP 1 Score: 79.3 bits (194), Expect = 6.980e-16 Identity = 35/53 (66.04%), Postives = 45/53 (84.91%), Query Frame = 1
Query: 7 QALMAREAVLKFNPQARIVAHHGNVKDPKFGLPFIQKFDIVLNALDNVDARRY 165
+A +AREAVLKF P A+IVAHH NVKDP+F + FI++F +VLN LDNV+ARR+
Sbjct: 67 KAQVAREAVLKFRPDAKIVAHHANVKDPQFDIDFIKRFTVVLNGLDNVEARRH 119
BLAST of mRNA_H-elongata_contig209793.6064.1 vs. uniprot
Match: A0A2R5GIE1_9STRA (Ubiquitin-activating enzyme, putative n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GIE1_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 9.550e-16 Identity = 35/50 (70.00%), Postives = 43/50 (86.00%), Query Frame = 1
Query: 16 MAREAVLKFNPQARIVAHHGNVKDPKFGLPFIQKFDIVLNALDNVDARRY 165
+ARE L+FNP A+IVAHHGNVK+ +FG+ FI KFDIVLNALDNV AR++
Sbjct: 80 VAREVALQFNPDAKIVAHHGNVKEERFGVQFISKFDIVLNALDNVGARQH 129
BLAST of mRNA_H-elongata_contig209793.6064.1 vs. uniprot
Match: A0A397UD81_9GLOM (Ubiquitin-activating enzyme E1-like n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397UD81_9GLOM) HSP 1 Score: 78.6 bits (192), Expect = 1.290e-15 Identity = 33/55 (60.00%), Postives = 45/55 (81.82%), Query Frame = 1
Query: 1 RGQALMAREAVLKFNPQARIVAHHGNVKDPKFGLPFIQKFDIVLNALDNVDARRY 165
+ +A +ARE+ LKFNP A IVAHH N+KDP+F + + + FDIV+NALDN+DARR+
Sbjct: 74 KSKAQVARESALKFNPNANIVAHHANIKDPQFSIEWFKSFDIVMNALDNLDARRH 128
BLAST of mRNA_H-elongata_contig209793.6064.1 vs. uniprot
Match: A0A3M6VQM9_9STRA (SUMO-activating enzyme subunit n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VQM9_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 3.320e-15 Identity = 31/53 (58.49%), Postives = 45/53 (84.91%), Query Frame = 1
Query: 7 QALMAREAVLKFNPQARIVAHHGNVKDPKFGLPFIQKFDIVLNALDNVDARRY 165
+AL+A+E +KFNP+A++ AHHGN+K +FGL + Q+F +VLNALDNVDAR++
Sbjct: 74 KALVAKEIAMKFNPKAKVTAHHGNIKSSQFGLEYFQQFSLVLNALDNVDARKH 126 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig209793.6064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig209793.6064.1 >prot_H-elongata_contig209793.6064.1 ID=prot_H-elongata_contig209793.6064.1|Name=mRNA_H-elongata_contig209793.6064.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp MAREAVLKFNPQARIVAHHGNVKDPKFGLPFIQKFDIVLNALDNVDARRYback to top mRNA from alignment at H-elongata_contig209793:455..628- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig209793.6064.1 ID=mRNA_H-elongata_contig209793.6064.1|Name=mRNA_H-elongata_contig209793.6064.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig209793:455..628- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig209793:455..628- >mRNA_H-elongata_contig209793.6064.1 ID=mRNA_H-elongata_contig209793.6064.1|Name=mRNA_H-elongata_contig209793.6064.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig209793:455..628- (Himanthalia elongata Himel1 dioecious)back to top |