mRNA_H-elongata_contig209793.6064.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig209793.6064.1
Unique NamemRNA_H-elongata_contig209793.6064.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig209793.6064.1 vs. uniprot
Match: D7FHM9_ECTSI (ThiF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM9_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 4.010e-22
Identity = 42/55 (76.36%), Postives = 52/55 (94.55%), Query Frame = 1
Query:    1 RGQALMAREAVLKFNPQARIVAHHGNVKDPKFGLPFIQKFDIVLNALDNVDARRY 165
            + ++LMAREAVLKFNP+ARIVAHHGNVK+ KFG+ FI+KFD+VLNALDN+DARR+
Sbjct:   74 KSKSLMAREAVLKFNPEARIVAHHGNVKEAKFGMAFIRKFDLVLNALDNIDARRH 128          
BLAST of mRNA_H-elongata_contig209793.6064.1 vs. uniprot
Match: A0A6H5JLI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLI2_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.390e-20
Identity = 41/55 (74.55%), Postives = 51/55 (92.73%), Query Frame = 1
Query:    1 RGQALMAREAVLKFNPQARIVAHHGNVKDPKFGLPFIQKFDIVLNALDNVDARRY 165
            + ++LMAREAVLKFNP+ARIVAHHGNVK+ KFG+ FI+KF +VLNALDN+DARR+
Sbjct:   83 KSKSLMAREAVLKFNPEARIVAHHGNVKEAKFGMAFIKKFHLVLNALDNIDARRH 137          
BLAST of mRNA_H-elongata_contig209793.6064.1 vs. uniprot
Match: A0A7S0N1S5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0N1S5_9CRYP)

HSP 1 Score: 77.8 bits (190), Expect = 3.750e-17
Identity = 35/57 (61.40%), Postives = 46/57 (80.70%), Query Frame = 1
Query:    1 RGQALMAREAVLKFNPQAR--IVAHHGNVKDPKFGLPFIQKFDIVLNALDNVDARRY 165
            + +AL+A E V KFNP A+  I+AHHGN+KD KFG  F+QKFD+V NALDN++ARR+
Sbjct:   12 KSKALVAAEQVKKFNPSAKLQIIAHHGNIKDKKFGADFMQKFDLVFNALDNIEARRH 68          
BLAST of mRNA_H-elongata_contig209793.6064.1 vs. uniprot
Match: A0A7S2XVK5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVK5_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 3.870e-17
Identity = 34/53 (64.15%), Postives = 44/53 (83.02%), Query Frame = 1
Query:    7 QALMAREAVLKFNPQARIVAHHGNVKDPKFGLPFIQKFDIVLNALDNVDARRY 165
            +A +ARE+VLK+ P A ++AHHGN+K  KFGL F ++FD VLNALDNVDARR+
Sbjct:   20 KAQVARESVLKYCPDANVIAHHGNIKTSKFGLSFFKRFDAVLNALDNVDARRH 72          
BLAST of mRNA_H-elongata_contig209793.6064.1 vs. uniprot
Match: A0A812MCX9_9DINO (Uba2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812MCX9_9DINO)

HSP 1 Score: 75.9 bits (185), Expect = 3.890e-16
Identity = 30/53 (56.60%), Postives = 44/53 (83.02%), Query Frame = 1
Query:    7 QALMAREAVLKFNPQARIVAHHGNVKDPKFGLPFIQKFDIVLNALDNVDARRY 165
            ++++A++ V KFNP A++ AHHGN+KD KFG+ +   FDIV+NALDNV+ARR+
Sbjct:   35 KSVVAKDVVSKFNPDAQVTAHHGNIKDAKFGMDYFANFDIVMNALDNVEARRH 87          
BLAST of mRNA_H-elongata_contig209793.6064.1 vs. uniprot
Match: A0A7S2RLT8_9STRA (SUMO-activating enzyme subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLT8_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 6.950e-16
Identity = 32/53 (60.38%), Postives = 46/53 (86.79%), Query Frame = 1
Query:    7 QALMAREAVLKFNPQARIVAHHGNVKDPKFGLPFIQKFDIVLNALDNVDARRY 165
            ++++ARE  LKFNP A+IVAHHGN+KD +FG+ + ++F +V+NALDNVDARR+
Sbjct:   15 KSVVAREMALKFNPDAKIVAHHGNIKDSQFGMDYFKQFSVVMNALDNVDARRH 67          
BLAST of mRNA_H-elongata_contig209793.6064.1 vs. uniprot
Match: A0A1Y1HTF5_KLENI (SUMO-activating enzyme subunit n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HTF5_KLENI)

HSP 1 Score: 79.3 bits (194), Expect = 6.980e-16
Identity = 35/53 (66.04%), Postives = 45/53 (84.91%), Query Frame = 1
Query:    7 QALMAREAVLKFNPQARIVAHHGNVKDPKFGLPFIQKFDIVLNALDNVDARRY 165
            +A +AREAVLKF P A+IVAHH NVKDP+F + FI++F +VLN LDNV+ARR+
Sbjct:   67 KAQVAREAVLKFRPDAKIVAHHANVKDPQFDIDFIKRFTVVLNGLDNVEARRH 119          
BLAST of mRNA_H-elongata_contig209793.6064.1 vs. uniprot
Match: A0A2R5GIE1_9STRA (Ubiquitin-activating enzyme, putative n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GIE1_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 9.550e-16
Identity = 35/50 (70.00%), Postives = 43/50 (86.00%), Query Frame = 1
Query:   16 MAREAVLKFNPQARIVAHHGNVKDPKFGLPFIQKFDIVLNALDNVDARRY 165
            +ARE  L+FNP A+IVAHHGNVK+ +FG+ FI KFDIVLNALDNV AR++
Sbjct:   80 VAREVALQFNPDAKIVAHHGNVKEERFGVQFISKFDIVLNALDNVGARQH 129          
BLAST of mRNA_H-elongata_contig209793.6064.1 vs. uniprot
Match: A0A397UD81_9GLOM (Ubiquitin-activating enzyme E1-like n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397UD81_9GLOM)

HSP 1 Score: 78.6 bits (192), Expect = 1.290e-15
Identity = 33/55 (60.00%), Postives = 45/55 (81.82%), Query Frame = 1
Query:    1 RGQALMAREAVLKFNPQARIVAHHGNVKDPKFGLPFIQKFDIVLNALDNVDARRY 165
            + +A +ARE+ LKFNP A IVAHH N+KDP+F + + + FDIV+NALDN+DARR+
Sbjct:   74 KSKAQVARESALKFNPNANIVAHHANIKDPQFSIEWFKSFDIVMNALDNLDARRH 128          
BLAST of mRNA_H-elongata_contig209793.6064.1 vs. uniprot
Match: A0A3M6VQM9_9STRA (SUMO-activating enzyme subunit n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VQM9_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.320e-15
Identity = 31/53 (58.49%), Postives = 45/53 (84.91%), Query Frame = 1
Query:    7 QALMAREAVLKFNPQARIVAHHGNVKDPKFGLPFIQKFDIVLNALDNVDARRY 165
            +AL+A+E  +KFNP+A++ AHHGN+K  +FGL + Q+F +VLNALDNVDAR++
Sbjct:   74 KALVAKEIAMKFNPKAKVTAHHGNIKSSQFGLEYFQQFSLVLNALDNVDARKH 126          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig209793.6064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHM9_ECTSI4.010e-2276.36ThiF domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JLI2_9PHAE2.390e-2074.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0N1S5_9CRYP3.750e-1761.40Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S2XVK5_9STRA3.870e-1764.15Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A812MCX9_9DINO3.890e-1656.60Uba2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A7S2RLT8_9STRA6.950e-1660.38SUMO-activating enzyme subunit n=1 Tax=Rhizochromu... [more]
A0A1Y1HTF5_KLENI6.980e-1666.04SUMO-activating enzyme subunit n=1 Tax=Klebsormidi... [more]
A0A2R5GIE1_9STRA9.550e-1670.00Ubiquitin-activating enzyme, putative n=1 Tax=Hond... [more]
A0A397UD81_9GLOM1.290e-1560.00Ubiquitin-activating enzyme E1-like n=2 Tax=Gigasp... [more]
A0A3M6VQM9_9STRA3.320e-1558.49SUMO-activating enzyme subunit n=2 Tax=Peronospora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig209793contigH-elongata_contig209793:455..628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue5.1e-17
Seed eggNOG ortholog2880.D7FHM9
Preferred nameUBA2
KEGG koko:K10685
KEGG Pathwayko04120,map04120
GOsGO:0000003,GO:0000166,GO:0000287,GO:0002119,GO:0002164,GO:0002376,GO:0002682,GO:0002684,GO:0003002,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005911,GO:0006355,GO:0006464,GO:0006807,GO:0006955,GO:0006959,GO:0007275,GO:0007389,GO:0008047,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008641,GO:0009506,GO:0009790,GO:0009791,GO:0009792,GO:0009793,GO:0009889,GO:0009952,GO:0009966,GO:0009967,GO:0009987,GO:0010154,GO:0010468,GO:0010556,GO:0010646,GO:0010647,GO:0016740,GO:0016874,GO:0016877,GO:0016925,GO:0017076,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019789,GO:0019899,GO:0019948,GO:0022414,GO:0023051,GO:0023056,GO:0030054,GO:0030234,GO:0030554,GO:0031323,GO:0031326,GO:0031347,GO:0031349,GO:0031510,GO:0031974,GO:0031981,GO:0032182,GO:0032183,GO:0032446,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033134,GO:0034121,GO:0034123,GO:0034124,GO:0034126,GO:0035639,GO:0036094,GO:0036211,GO:0043085,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044388,GO:0044390,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0046872,GO:0046982,GO:0046983,GO:0048316,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048608,GO:0048731,GO:0048856,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0055044,GO:0060255,GO:0061458,GO:0061650,GO:0061656,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0071704,GO:0080090,GO:0080134,GO:0097159,GO:0097367,GO:0098772,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1902494,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.SUMO activating enzyme activity
EggNOG OGsCOG0476@1,KOG2013@2759
EC6.2.1.45
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size159
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930172.316972-CDS-H-elongata_contig209793:454..6131622930172.316972-CDS-H-elongata_contig209793:454..613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209793 455..613 -
1691679308.2074728-CDS-H-elongata_contig209793:454..6131691679308.2074728-CDS-H-elongata_contig209793:454..613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209793 455..613 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930172.3321738-UTR-H-elongata_contig209793:613..6281622930172.3321738-UTR-H-elongata_contig209793:613..628Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig209793 614..628 -
1691679308.2204528-UTR-H-elongata_contig209793:613..6281691679308.2204528-UTR-H-elongata_contig209793:613..628Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig209793 614..628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig209793.6064.1prot_H-elongata_contig209793.6064.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig209793 455..613 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig209793.6064.1

>prot_H-elongata_contig209793.6064.1 ID=prot_H-elongata_contig209793.6064.1|Name=mRNA_H-elongata_contig209793.6064.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
MAREAVLKFNPQARIVAHHGNVKDPKFGLPFIQKFDIVLNALDNVDARRY
GG*
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mRNA from alignment at H-elongata_contig209793:455..628-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig209793.6064.1 ID=mRNA_H-elongata_contig209793.6064.1|Name=mRNA_H-elongata_contig209793.6064.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig209793:455..628- (Himanthalia elongata Himel1 dioecious)
CGGGGCCAGGCGTTGATGGCCAGGGAAGCGGTGCTCAAGTTCAACCCACA AGCGAGGATCGTCGCGCACCACGGCAACGTGAAGGATCCAAAGTTCGGCT TACCGTTCATCCAAAAGTTCGACATCGTGCTCAATGCCCTGGACAACGTA GACGCGCGCAGGTACGGGGGCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig209793:455..628-

>mRNA_H-elongata_contig209793.6064.1 ID=mRNA_H-elongata_contig209793.6064.1|Name=mRNA_H-elongata_contig209793.6064.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig209793:455..628- (Himanthalia elongata Himel1 dioecious)
ATGGCCAGGGAAGCGGTGCTCAAGTTCAACCCACAAGCGAGGATCGTCGC
GCACCACGGCAACGTGAAGGATCCAAAGTTCGGCTTACCGTTCATCCAAA
AGTTCGACATCGTGCTCAATGCCCTGGACAACGTAGACGCGCGCAGGTAC
GGGGGCTAGATGGCCAGGGAAGCGGTGCTCAAGTTCAACCCACAAGCGAG
GATCGTCGCGCACCACGGCAACGTGAAGGATCCAAAGTTCGGCTTACCGT
TCATCCAAAAGTTCGACATCGTGCTCAATGCCCTGGACAACGTAGACGCG
CGCAGGTACGGGGGCTAG
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