mRNA_H-elongata_contig209774.6062.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig209774.6062.1
Unique NamemRNA_H-elongata_contig209774.6062.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig209774.6062.1 vs. uniprot
Match: F8UWN5_9PHAE (NADH dehydrogenase subunit 11 n=73 Tax=Phaeophyceae TaxID=2870 RepID=F8UWN5_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 6.130e-24
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    1 IWVKNGSTVIQACQAAGVNIPRFCYHDNLFIAGNCRMCLVEVANAPK 141
            IWVK GSTVIQACQAAG NIPRFCYHD LFIAGNCRMCLVEV+N+PK
Sbjct:   11 IWVKKGSTVIQACQAAGANIPRFCYHDKLFIAGNCRMCLVEVSNSPK 57
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BLAST of mRNA_H-elongata_contig209774.6062.1 vs. uniprot
Match: A0A2R4QQ95_9PHAE (NADH dehydrogenase subunit 11 n=6 Tax=Fucus TaxID=3011 RepID=A0A2R4QQ95_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.690e-23
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    1 IWVKNGSTVIQACQAAGVNIPRFCYHDNLFIAGNCRMCLVEVANAPK 141
            IWVK GSTVIQACQ+AGV IPRFCYHD LFIAGNCRMCLVEV NAPK
Sbjct:   11 IWVKKGSTVIQACQSAGVKIPRFCYHDKLFIAGNCRMCLVEVGNAPK 57
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BLAST of mRNA_H-elongata_contig209774.6062.1 vs. uniprot
Match: A0A0G2RLB7_TUROR (NADH dehydrogenase subunit 11 n=24 Tax=Sargassaceae TaxID=3014 RepID=A0A0G2RLB7_TUROR)

HSP 1 Score: 94.7 bits (234), Expect = 4.550e-23
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    1 IWVKNGSTVIQACQAAGVNIPRFCYHDNLFIAGNCRMCLVEVANAPK 141
            IWVK GSTVIQAC+AAGV IPRFCYHD LFIAGNCRMCLVEV N+PK
Sbjct:   11 IWVKKGSTVIQACEAAGVKIPRFCYHDKLFIAGNCRMCLVEVGNSPK 57
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BLAST of mRNA_H-elongata_contig209774.6062.1 vs. uniprot
Match: A0A8F0K0N1_9PHAE (NADH dehydrogenase subunit 11 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0K0N1_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 9.500e-23
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 IWVKNGSTVIQACQAAGVNIPRFCYHDNLFIAGNCRMCLVEVANAPK 141
            +WVK GSTVIQACQAAG  IPRFCYHD LF+AGNCRMCLVEV NAPK
Sbjct:   11 VWVKKGSTVIQACQAAGAKIPRFCYHDKLFVAGNCRMCLVEVNNAPK 57
[Close]
BLAST of mRNA_H-elongata_contig209774.6062.1 vs. uniprot
Match: E6ZET3_ECTSI (NADH dehydrogenase subunit 11 n=3 Tax=Ectocarpales TaxID=2877 RepID=E6ZET3_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 2.990e-21
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 IWVKNGSTVIQACQAAGVNIPRFCYHDNLFIAGNCRMCLVEVANAPK 141
            +WV+ GSTVIQACQAAG  +PRFCYHD LF+AGNCRMCLVEV+ +PK
Sbjct:   11 VWVRKGSTVIQACQAAGAQVPRFCYHDKLFVAGNCRMCLVEVSKSPK 57
[Close]
BLAST of mRNA_H-elongata_contig209774.6062.1 vs. uniprot
Match: Q9XNR7_PYLLI (NADH dehydrogenase subunit 11 n=6 Tax=Ectocarpales TaxID=2877 RepID=Q9XNR7_PYLLI)

HSP 1 Score: 89.4 bits (220), Expect = 6.340e-21
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 IWVKNGSTVIQACQAAGVNIPRFCYHDNLFIAGNCRMCLVEVANAPK 141
            IW+K GSTVIQACQ AG  +PRFCYHD LFIAGNCRMCLVEV+ +PK
Sbjct:   11 IWLKKGSTVIQACQVAGAQVPRFCYHDKLFIAGNCRMCLVEVSKSPK 57
[Close]
BLAST of mRNA_H-elongata_contig209774.6062.1 vs. uniprot
Match: A0A8E8U4G1_9PHAE (Nad11 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8U4G1_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 3.400e-20
Identity = 38/47 (80.85%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 IWVKNGSTVIQACQAAGVNIPRFCYHDNLFIAGNCRMCLVEVANAPK 141
            +WVK GSTVIQACQA G  IPRFCYHD L IAGNCRMCLVEV N+PK
Sbjct:   11 VWVKRGSTVIQACQAVGAIIPRFCYHDKLSIAGNCRMCLVEVNNSPK 57
[Close]
BLAST of mRNA_H-elongata_contig209774.6062.1 vs. uniprot
Match: Q2TUA0_DICDH (NADH dehydrogenase subunit 11 n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=Q2TUA0_DICDH)

HSP 1 Score: 87.0 bits (214), Expect = 4.140e-20
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 IWVKNGSTVIQACQAAGVNIPRFCYHDNLFIAGNCRMCLVEVANAPK 141
            +WVK GSTV+QAC+AAG  +PRFCYH+ L IAGNCRMCLVEV N+PK
Sbjct:   10 VWVKGGSTVLQACEAAGEEVPRFCYHEKLLIAGNCRMCLVEVGNSPK 56
[Close]
BLAST of mRNA_H-elongata_contig209774.6062.1 vs. uniprot
Match: A0A4Y5T8Q6_9PHAE (NADH dehydrogenase subunit 11 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T8Q6_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 8.240e-20
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 IWVKNGSTVIQACQAAGVNIPRFCYHDNLFIAGNCRMCLVEVANAPK 141
            +WVK GSTV+QAC+A G  IPRFCYH  LF+AGNCRMCLVEV N+PK
Sbjct:   10 VWVKKGSTVLQACEAVGEEIPRFCYHKKLFLAGNCRMCLVEVGNSPK 56
[Close]
BLAST of mRNA_H-elongata_contig209774.6062.1 vs. uniprot
Match: A0A8F0FDA4_9PHAE (NADH dehydrogenase subunit 11 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FDA4_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.680e-19
Identity = 36/47 (76.60%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    1 IWVKNGSTVIQACQAAGVNIPRFCYHDNLFIAGNCRMCLVEVANAPK 141
            IWVK GSTV+QAC+A G  IPRFCYH  LFIAGNCRMC VEV N+PK
Sbjct:   10 IWVKKGSTVLQACEAIGEKIPRFCYHKKLFIAGNCRMCFVEVGNSPK 56
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig209774.6062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F8UWN5_9PHAE6.130e-2489.36NADH dehydrogenase subunit 11 n=73 Tax=Phaeophycea... [more]
A0A2R4QQ95_9PHAE1.690e-2389.36NADH dehydrogenase subunit 11 n=6 Tax=Fucus TaxID=... [more]
A0A0G2RLB7_TUROR4.550e-2387.23NADH dehydrogenase subunit 11 n=24 Tax=Sargassacea... [more]
A0A8F0K0N1_9PHAE9.500e-2385.11NADH dehydrogenase subunit 11 n=1 Tax=Desmarestia ... [more]
E6ZET3_ECTSI2.990e-2176.60NADH dehydrogenase subunit 11 n=3 Tax=Ectocarpales... [more]
Q9XNR7_PYLLI6.340e-2178.72NADH dehydrogenase subunit 11 n=6 Tax=Ectocarpales... [more]
A0A8E8U4G1_9PHAE3.400e-2080.85Nad11 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID... [more]
Q2TUA0_DICDH4.140e-2074.47NADH dehydrogenase subunit 11 n=1 Tax=Dictyota dic... [more]
A0A4Y5T8Q6_9PHAE8.240e-2074.47NADH dehydrogenase subunit 11 n=1 Tax=Dictyopteris... [more]
A0A8F0FDA4_9PHAE1.680e-1976.60NADH dehydrogenase subunit 11 n=1 Tax=Protohalopte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig209774contigH-elongata_contig209774:818..958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score84.3
Seed ortholog evalue1.6e-14
Seed eggNOG ortholog51511.ENSCSAVP00000008534
Preferred nameNDUFS1
KEGG rclassRC00061
KEGG koko:K03934
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005758,GO:0005759,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006996,GO:0007005,GO:0008137,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009055,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0010257,GO:0012501,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0042391,GO:0042773,GO:0042775,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0048037,GO:0050136,GO:0051536,GO:0051540,GO:0051881,GO:0055086,GO:0055114,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0072593,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
EggNOG free text desc.2 iron, 2 sulfur cluster binding
EggNOG OGs38DHR@33154,3BE04@33208,3CT34@33213,482GT@7711,COG1034@1,KOG2282@2759
EC1.6.5.3,1.6.99.3
COG Functional cat.C
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930172.0781484-CDS-H-elongata_contig209774:817..9581622930172.0781484-CDS-H-elongata_contig209774:817..958Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209774 818..958 -
1691679308.0957878-CDS-H-elongata_contig209774:817..9581691679308.0957878-CDS-H-elongata_contig209774:817..958Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209774 818..958 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig209774.6062.1prot_H-elongata_contig209774.6062.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig209774 818..958 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig209774.6062.1

>prot_H-elongata_contig209774.6062.1 ID=prot_H-elongata_contig209774.6062.1|Name=mRNA_H-elongata_contig209774.6062.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
IWVKNGSTVIQACQAAGVNIPRFCYHDNLFIAGNCRMCLVEVANAPK
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mRNA from alignment at H-elongata_contig209774:818..958-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig209774.6062.1 ID=mRNA_H-elongata_contig209774.6062.1|Name=mRNA_H-elongata_contig209774.6062.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=141bp|location=Sequence derived from alignment at H-elongata_contig209774:818..958- (Himanthalia elongata Himel1 dioecious)
ATTTGGGTAAAAAATGGATCTACTGTTATTCAAGCATGTCAAGCAGCGGG
TGTAAATATCCCTAGATTTTGTTATCATGATAATCTTTTTATTGCCGGTA
ATTGCCGTATGTGTCTAGTGGAAGTTGCGAATGCTCCAAAA
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Coding sequence (CDS) from alignment at H-elongata_contig209774:818..958-

>mRNA_H-elongata_contig209774.6062.1 ID=mRNA_H-elongata_contig209774.6062.1|Name=mRNA_H-elongata_contig209774.6062.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig209774:818..958- (Himanthalia elongata Himel1 dioecious)
ATTTGGGTAAAAAATGGATCTACTGTTATTCAAGCATGTCAAGCAGCGGG
TGTAAATATCCCTAGATTTTGTTATCATGATAATCTTTTTATTGCCGGTA
ATTGCCGTATGTGTCTAGTGGAAGTTGCGAATGCTCCAAAAATTTGGGTA
AAAAATGGATCTACTGTTATTCAAGCATGTCAAGCAGCGGGTGTAAATAT
CCCTAGATTTTGTTATCATGATAATCTTTTTATTGCCGGTAATTGCCGTA
TGTGTCTAGTGGAAGTTGCGAATGCTCCAAAA
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