mRNA_H-elongata_contig20977.6061.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20977.6061.1
Unique NamemRNA_H-elongata_contig20977.6061.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20977.6061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20977contigH-elongata_contig20977:5153..5523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size184
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930172.0034845-CDS-H-elongata_contig20977:5152..52561622930172.0034845-CDS-H-elongata_contig20977:5152..5256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20977 5153..5256 -
1691679308.076611-CDS-H-elongata_contig20977:5152..52561691679308.076611-CDS-H-elongata_contig20977:5152..5256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20977 5153..5256 -
1622930172.0197184-CDS-H-elongata_contig20977:5444..55231622930172.0197184-CDS-H-elongata_contig20977:5444..5523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20977 5445..5523 -
1691679308.085496-CDS-H-elongata_contig20977:5444..55231691679308.085496-CDS-H-elongata_contig20977:5444..5523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20977 5445..5523 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20977.6061.1prot_H-elongata_contig20977.6061.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20977 5153..5523 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20977.6061.1

>prot_H-elongata_contig20977.6061.1 ID=prot_H-elongata_contig20977.6061.1|Name=mRNA_H-elongata_contig20977.6061.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
EGFGREFPVAVQRFSPRAFGTNIYKKAFGRSPPKSLWIRIMREVFHYHRA
AGWEVDVALR*
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mRNA from alignment at H-elongata_contig20977:5153..5523-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20977.6061.1 ID=mRNA_H-elongata_contig20977.6061.1|Name=mRNA_H-elongata_contig20977.6061.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=371bp|location=Sequence derived from alignment at H-elongata_contig20977:5153..5523- (Himanthalia elongata Himel1 dioecious)
GAAGGGTTTGGCAGGGAATTTCCTGTTGCGGTTCAGCGATTCTCACCCAG
GGCGTTTGGAACTAATATATACAAAAAAGGTGCGATCATTTTGTTTTTTT
GTTTGGTTTCCTGAGAACAACTTTCAATAGCGAGTACAAAATTACACCTC
GATCGGACGTGGGAAGTTGAAATCGGCCAAATATTGTGTGTCTCCTGATC
AAAACTATTAGCTCTCTATCGACGCACTCCCTTGGTCCTTTTCCACGTCC
CCGTAAATCTGCCACAGCGTTTGGAAGAAGCCCACCAAAATCGCTCTGGA
TCCGAATTATGCGTGAAGTATTCCATTATCACCGTGCGGCAGGATGGGAG
GTGGACGTTGCACTACGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig20977:5153..5523-

>mRNA_H-elongata_contig20977.6061.1 ID=mRNA_H-elongata_contig20977.6061.1|Name=mRNA_H-elongata_contig20977.6061.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig20977:5153..5523- (Himanthalia elongata Himel1 dioecious)
GAAGGGTTTGGCAGGGAATTTCCTGTTGCGGTTCAGCGATTCTCACCCAG
GGCGTTTGGAACTAATATATACAAAAAAGGAAGGGTTTGGCAGGGAATTT
CCTGTTGCGGTTCAGCGATTCTCACCCAGGGCGTTTGGAACTAATATATA
CAAAAAAGCGTTTGGAAGAAGCCCACCAAAATCGCTCTGGATCCGAATTA
TGCGTGAAGTATTCCATTATCACCGTGCGGCAGGATGGGAGGTGGACGTT
GCACTACGGTGACGTTTGGAAGAAGCCCACCAAAATCGCTCTGGATCCGA
ATTATGCGTGAAGTATTCCATTATCACCGTGCGGCAGGATGGGAGGTGGA
CGTTGCACTACGGTGA
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