mRNA_H-elongata_contig20974.6060.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20974.6060.1
Unique NamemRNA_H-elongata_contig20974.6060.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20974.6060.1 vs. uniprot
Match: D7FX37_ECTSI (Small Conductance Mechanosensitive Ion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX37_ECTSI)

HSP 1 Score: 391 bits (1004), Expect = 6.150e-125
Identity = 198/265 (74.72%), Postives = 227/265 (85.66%), Query Frame = 1
Query:    1 QEMVLGVVGTFKDHRSLALTLQDSEHIARKLGLLIMTLIVFVLXXXWLAIWGADVVNLSVTFASFLIAISFMISTSASNLVTSVLFIFVTRLYDVGDRVHIYNDSQTN-TTPTNVTVVKVDLLTTVFKRWDEQIFYMPNYLLATKTIVNIQRTAHQWHEFYINIAANTSSSKIKALHTWLQNFAKGKDKPEGLYPRMGFSLTSIEDCNRLNIRIIFRQRGNWQASTFAEKKWACQSMCTWAIKNGCDSIGISYSMPEVPIRVKQK 792
            +EMVLGVVGTFKDHRSLA TLQDSEHIA+KLGL+IM +I+F+L   WL+IWGADVV+LSVTFASFLIA SFMI T+ASNL+++VLFIFV+RLYDVGDRVHIY+ S T    PTNVTVVKVDL+TTVFKRWDEQ+FYMPN+LLATKTIVNIQRTAHQWHEF I +AA T+  K+ AL T LQ F+K KDKPEGLY RMGFSL  IED  +L IRI FRQRGNWQ     EKKWACQSMCTWAIK+ CDS+ ISY +PEVP+++K+K
Sbjct:  870 EEMVLGVVGTFKDHRSLAHTLQDSEHIAQKLGLIIMCVILFILFFVWLSIWGADVVSLSVTFASFLIAFSFMIGTAASNLMSAVLFIFVSRLYDVGDRVHIYSGSNTQGEEPTNVTVVKVDLMTTVFKRWDEQVFYMPNHLLATKTIVNIQRTAHQWHEFMIQVAATTTPEKLTALQTSLQEFSKSKDKPEGLYTRMGFSLVRIEDSTKLTIRITFRQRGNWQNM---EKKWACQSMCTWAIKSACDSLNISYFLPEVPVQMKKK 1131          
BLAST of mRNA_H-elongata_contig20974.6060.1 vs. uniprot
Match: A0A6H5JBC1_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC1_9PHAE)

HSP 1 Score: 385 bits (989), Expect = 1.720e-122
Identity = 197/265 (74.34%), Postives = 224/265 (84.53%), Query Frame = 1
Query:    4 EMVLGVVGTFKDHRSLALTLQDSEHIARKLGLLIMTLIVFVLXXXWLAIWGADVVNLSVTFASFLIAISFMISTSASNLVTSVLFIFVTRLYDVGDRVHIYNDSQT-NTTPTNVTVVKVDLLTTVFKRWDEQIFYMPNYLLATKTIVNIQRTAHQWHEFYINIAANTSSSKIKALHTWLQNFAKGKDKPEGLYPRMGFSLTSIEDCNRLNIRIIFRQRGNWQASTFAEKKWACQSMCTWAIKNGCDSIGISYSMPEVPIRVKQKI 795
            EMVLGVV TFKDHRSLA TL DSEHIARKLGL+I  LI+F+L   WL+I G DV++LSVTFASFLIA SFMI T+ASNL+T+VLFIFV+RLYDVGDRVHIY+D QT    P NV V KVDL TT F+RWDEQIFY+PN+LLA KTIVNIQRTAHQWHEFYI++AA TSS K++ LH  LQ FAK KDKPEGLYPRMGFSLT IED  RL+IRI+FRQRGNWQ+    EKKWACQSMCTWAIKN CD+IGI+Y +PEVP+ +K K+
Sbjct:  904 EMVLGVVDTFKDHRSLAHTLHDSEHIARKLGLIIFWLILFILAFVWLSILGFDVLSLSVTFASFLIAFSFMIGTAASNLMTAVLFIFVSRLYDVGDRVHIYDDVQTAGVEPMNVVVTKVDLRTTSFRRWDEQIFYIPNHLLAEKTIVNIQRTAHQWHEFYIHVAATTSSRKLETLHNALQQFAKKKDKPEGLYPRMGFSLTGIEDSTRLSIRIVFRQRGNWQSM---EKKWACQSMCTWAIKNACDTIGITYYLPEVPVVMKNKM 1165          
BLAST of mRNA_H-elongata_contig20974.6060.1 vs. uniprot
Match: D7FX36_ECTSI (Small Conductance Mechanosensitive Ion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX36_ECTSI)

HSP 1 Score: 324 bits (830), Expect = 2.350e-100
Identity = 164/220 (74.55%), Postives = 187/220 (85.00%), Query Frame = 1
Query:  139 WLAIWGADVVNLSVTFASFLIAISFMISTSASNLVTSVLFIFVTRLYDVGDRVHIYNDSQT-NTTPTNVTVVKVDLLTTVFKRWDEQIFYMPNYLLATKTIVNIQRTAHQWHEFYINIAANTSSSKIKALHTWLQNFAKGKDKPEGLYPRMGFSLTSIEDCNRLNIRIIFRQRGNWQASTFAEKKWACQSMCTWAIKNGCDSIGISYSMPEVPIRVKQKI 795
            WL+I G DV++LSVTFASFLIA SFMI T+ASNL+++VLFIFV+RLYDVGDRVHIY+D QT    P NV VVKVDL TT F+RWDEQIFY+PN+LLA KTIVNIQRTAHQWHEFYI++AA TSS K++ LH  LQ FAK KDKPEGL+PRMGFSLT IED  RL+IRIIFRQRGNWQ     +KKWACQSMCTWAIKN CD+IGI+Y +PEVPI +K KI
Sbjct:  808 WLSILGFDVLSLSVTFASFLIAFSFMIGTAASNLMSAVLFIFVSRLYDVGDRVHIYDDVQTAGVEPMNVVVVKVDLRTTSFRRWDEQIFYIPNHLLADKTIVNIQRTAHQWHEFYIHVAATTSSQKLETLHDALQKFAKKKDKPEGLHPRMGFSLTGIEDSTRLSIRIIFRQRGNWQNM---DKKWACQSMCTWAIKNACDTIGITYYLPEVPIVMKNKI 1024          
BLAST of mRNA_H-elongata_contig20974.6060.1 vs. uniprot
Match: A0A6H5JDS1_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS1_9PHAE)

HSP 1 Score: 302 bits (774), Expect = 1.350e-91
Identity = 166/271 (61.25%), Postives = 191/271 (70.48%), Query Frame = 1
Query:    1 QEMVLGVVGTFKDHRSLALTLQDSEHIARKLGLLIMTLIVFVLXXXWLAIWGADVVNLSVTFASFLIAISFMISTSASNLVTSVLFIFVTRLYDVGDRVHIYNDSQTN-TTPTNVTVVKVDLLTTVFKRWDEQIFYMPNYLLATKTIVNIQRTAHQWHEFYINIAANTSSSKIKALHTWLQNFAKGKDKPEGLYPRMGFSLTSIEDCNRLNIRIIFRQRGNWQASTFA------EKKWACQSMCTWAIKNGCDSIGISYSMPEVPIRVKQK 792
            +EMVLGVVGTFKDHRSLA TLQDSEHIA+KLGL+IM +I+F+L   WL+IWGADVV+LSVTFASFLIA SFMI T+ASNL+++VLFIFV+RLYDVGDRVHIY+ S T    PTNVTVVKVDL+TTVFKRWDEQ                                              LQ F+K KDKPEGLYPRMGFSL  IED  +L IRI FRQRGNWQ    A      EKKWACQSMCTWAIK+ CDS+ ISY +PE+P+++K+K
Sbjct:  918 EEMVLGVVGTFKDHRSLAHTLQDSEHIAQKLGLIIMCVILFILFFVWLSIWGADVVSLSVTFASFLIAFSFMIGTAASNLMSAVLFIFVSRLYDVGDRVHIYSGSNTRGEEPTNVTVVKVDLMTTVFKRWDEQ--------------------------------------------ASLQEFSKSKDKPEGLYPRMGFSLVRIEDSTKLTIRITFRQRGNWQVGQEAIVVVNMEKKWACQSMCTWAIKSACDSLNISYFLPEIPVQMKEK 1144          
BLAST of mRNA_H-elongata_contig20974.6060.1 vs. uniprot
Match: A0A835YNP7_9STRA (Mechanosensitive ion channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNP7_9STRA)

HSP 1 Score: 244 bits (622), Expect = 4.980e-77
Identity = 125/267 (46.82%), Postives = 183/267 (68.54%), Query Frame = 1
Query:    1 QEMVLGVVGTFKDHRSLALTLQDSEHIARKLGLLIMTLIVFVLXXXWLAIWGADVVNLSVTFASFLIAISFMISTSASNLVTSVLFIFVTRLYDVGDRV-HIYNDSQTNTTPTNVTVVKVDLLTTVFKRWDEQIFYMPNYLLATKTIVNIQRTAHQWHEFYINIAANTSSSKIKALHTWLQNFAKGKDKPEGLYPRMGFSLTSIEDCNRLNIRIIFRQRGNWQASTFAEKKWACQSMCTWAIKNGCDSIGISYSMPEVPIRV-KQKI 795
            +E+V GVV  +KDH+SLALTLQDS+ +A KLG ++   I+  L   WL I+G D+  L++TFAS L+ +S +I  +++NL  S++FIFV R +DVGDRV H + D +      N  V ++DLL T F+ WDE+++Y+PN++LAT+ I+NIQR+  QWHEF+I + A+T S K+  L      FA+  +KP G++P + F+LT +E+ NRL IR+ FRQ+GNWQ      +KWA QSMCT  I N C  +GI+Y+ P++P+   KQK+
Sbjct:   19 EEVVNGVVNIYKDHQSLALTLQDSQRMAHKLGEVLGAGILIALIFIWLRIFGRDIFALTLTFASVLVGVSVLIGPASANLFASIVFIFVQRPFDVGDRVFHWFPDGRGEMQ--NAVVTRIDLLITCFRAWDEKVYYLPNHVLATRPIINIQRSGDQWHEFFIQVLASTPSQKLWELKAKCVEFAEKHNKPSGIHPHIQFALTGVENTNRLTIRVCFRQKGNWQ---ILSRKWAVQSMCTNCIVNSCKELGITYTQPQLPLDFNKQKL 280          
BLAST of mRNA_H-elongata_contig20974.6060.1 vs. uniprot
Match: A0A835Z0M4_9STRA (Mechanosensitive ion channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0M4_9STRA)

HSP 1 Score: 183 bits (464), Expect = 6.340e-49
Identity = 99/254 (38.98%), Postives = 161/254 (63.39%), Query Frame = 1
Query:    4 EMVLGVVGTFKDHRSLALTLQDSEHIARKLGLLIMTLIVFVLXXXWLAIWGADVVNLSVTFASFLIAISFMISTSASNLVTSVLFIFVTRLYDVGDRVHIYNDSQTNTTPTNVTVVKVDLLTTVFKRWDEQIFYMPNYLLATKTIVNIQRTAHQWHEFYINIAANTSSSKIKALHTWLQNFAKGKDKPEGLYPRMGFSLTSIEDCNRLNIRIIFRQRGNWQASTFAEKKWACQSMCTWAIKNGCDSIGISYSMP 765
            +++ GVV  +KDH++LA TL DS+ +  KLG +I  L+ FV+   WL+IWG   +++S+TF+SFL++ +FM  ++A+ LV S++F+FVT  YDVGDR+ I +  QT+       VVK++LLTTVF+R D Q   MPN LL+   ++N+QR+ + W EF + ++A T   K+ +L   +Q FA   +   G+Y ++GF+ T I+D  +L +RI  + R NW      +++W   +    AI + C  +GI+++ P
Sbjct:  714 DLLQGVVSIYKDHKNLARTLADSQQMVNKLGQIIGALMSFVMIFIWLSIWGYQFLSISITFSSFLLSFTFMFGSTATALVESIIFVFVTSAYDVGDRLMIPDIMQTSRYH-GCKVVKINLLTTVFERGDGQSLIMPNKLLSQMALINLQRSGNMWFEFVVGVSATTPLHKLHSLKGRMQKFAN--EDSSGIYHKIGFTFTEIQDSAKLVVRINVQGRFNWGD---VKRRWEVHNATCQAIAHHCAELGITFTPP 961          
BLAST of mRNA_H-elongata_contig20974.6060.1 vs. uniprot
Match: A0A835YNU8_9STRA (Mechanosensitive ion channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNU8_9STRA)

HSP 1 Score: 130 bits (326), Expect = 2.000e-30
Identity = 81/260 (31.15%), Postives = 142/260 (54.62%), Query Frame = 1
Query:   19 VVGTFKDHRSLALTLQDSEHIARKLGLLIMTLIVFVLXXXWLAIWGADVVNLSVTFASFLIAISFMISTSASNLVTSVLFIFVTRLYDVGDRVHIYNDSQTNTTPTNVTVVKVDLLTTVFKRWDEQIFYMPNYLLATKTIVNIQRTAHQWHEFYINIAANTSSSKIKALHTWLQNFAKGKDKPEGLYP----RMGFSLTSIEDCNRLNIRIIFRQRGNWQASTFAEKKWACQSMCTWAIKNGCDSIGISYSMPEVPIRVK 786
            +V  ++  RSLALTL+D E I  KLG +I  +  F+    +L I+  +++ L VT+ S ++A SF+  +SA+N   S +FIFVTR YDVGDRV+I ++        N  V ++++LTTVF+RWD+    +PN  LA + I N++R+        + ++  T  +K++AL   +Q +A+    P  LY      + +    +  C  + +  ++ Q+G+WQ +    K +   S+    +   C  +G+ Y++P   + +K
Sbjct:  882 MVTIYQQRRSLALTLKDYESILIKLGYVISLVWSFIALFVFLWIFDQNILGLGVTWVSLVVAFSFLFGSSAANFFESCVFIFVTRAYDVGDRVYIKDELNDEA---NYVVQRINMLTTVFRRWDDHYTILPNQQLAKREIRNMRRSGDGVMLMTLLVSIATPRAKLEALKERMQEYARAVTGP--LYSCDPNSVDYCCRRVISCTNMEVFFVYSQKGSWQDNYLKVKNFHLMSL---RLAEVCHELGLEYALPTQGVTLK 1133          
BLAST of mRNA_H-elongata_contig20974.6060.1 vs. uniprot
Match: A0A0L0TD20_ALLM3 (EF-hand domain-containing protein n=2 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0TD20_ALLM3)

HSP 1 Score: 125 bits (313), Expect = 9.970e-29
Identity = 80/256 (31.25%), Postives = 134/256 (52.34%), Query Frame = 1
Query:    4 EMVLGVVGTFKDHRSLALTLQDSEHIARKLGLLIMTLIVFVLXXXWLAIWGADVVNLSVTFASFLIAISFMISTSASNLVTSVLFIFVTRLYDVGDRVHIYNDSQTNTTPTNVTVVKVDLLTTVFKRWDEQIFYMPNYLLATKTIVNIQRTAHQWHEFYINIAANTSSSKIKALHTWLQNF--AKGKDKPEGLYPRMGFSLTSIEDCNRLNIRIIFRQRGNWQASTFAEKKWACQSMCTWAIKNGCDSIGISYSMP 765
            E+V  V   + D   LA    D   +  KL   + ++ + +       +WG DV  + V   SFL+A+SF   ++  N+  SV+F+F T  +DVGDRV+I  D        N+ V ++ LL+T F+R D  I Y PN++L TK I+N++R+        +++A NT + KI AL   L +F  A  +D   GLY ++      +E+ NRL +R+    + NWQ S   +K+W  ++    A+++    + + Y++P
Sbjct:  636 ELVEAVQAIYADCLDLAKARTDLAVVLSKLDRALWSVSLLITVVCSCIVWGVDVAKVLVPLGSFLVALSFAFGSTVRNMFESVVFVFSTHAFDVGDRVYIDQD--------NLVVREIGLLSTTFERADGAIIYAPNFVLQTKPILNVRRSQPMSETIKVHVAFNTPTHKIYALEALLNDFLRAHSRDYLGGLYVQV----FELENVNRLELRMFLDHKSNWQDS---KKRWVRRTKFMAALRDAMMQLSLEYTLP 876          
BLAST of mRNA_H-elongata_contig20974.6060.1 vs. uniprot
Match: A0A058ZGC3_FONAL (EF-hand domain-containing protein n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058ZGC3_FONAL)

HSP 1 Score: 116 bits (290), Expect = 1.310e-25
Identity = 69/250 (27.60%), Postives = 134/250 (53.60%), Query Frame = 1
Query:    1 QEMVLGVVGTFKDHRSLALTLQDSEHIARKLGLLIMTLIVFVLXXXWLAIWGADVVNLSVTFASFLIAISFMISTSASNLVTSVLFIFVTRLYDVGDRVHIYNDSQTNTTPTNVTVVKVDLLTTVFKRWDEQIFYMPNYLLATKTIVNIQRTAHQWHEFYINIAANTSSSKIKALHTWLQNFAKGKDKPEGLYPRMGFSLTSIEDCNRLNIRIIFRQRGNWQASTFAEKKWACQSMCTWAIKNGCDSIGI 750
            ++M   +   +++ ++L+ +L+DS  +   L   +  +++  L   +L I+G ++ +  V  AS ++++SF+   SA  +  +V+++FV   YDVGDRV I +         N  V ++++  TVF+RWDEQ F++PN++L  K ++NI+R+ +Q H FY+ + A+T+S ++  L   +Q + + +  PE     + F L  ++   R+ + I   Q  NWQ       +W  ++         C  +GI
Sbjct: 2029 RDMKEALQNIYRERKNLSNSLRDSGTMVNTLDRFVSLMLLVCLLFAFLLIFGTNIESTVVPVASLIVSMSFIFGHSAQRMFDNVIYLFVEHPYDVGDRVFIDDH--------NFIVARMNITATVFRRWDEQYFWIPNHILTDKVVINIRRSGNQRHTFYMFLDADTTSEQLGTLRGMMQGWVESQ--PERFARDVDFILFDVDTHGRMQMLITIGQLSNWQDGAV---RWKNRTDSWLFFLQSCRELGI 2265          
BLAST of mRNA_H-elongata_contig20974.6060.1 vs. uniprot
Match: A0A6H5JSR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR3_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 9.770e-25
Identity = 84/270 (31.11%), Postives = 141/270 (52.22%), Query Frame = 1
Query:    1 QEMVLGVVGTFKDHRSLALTLQDSEHIARKLGLLIMTLIVFVLXXXWLAIWGADVVNLSVTFASFLIAISFMISTSASNLVTSVLFIFVTRLYDVGDRVHIYNDSQTNTTPTNVTVVKVDLLTTVFKRWDEQIFYMPNYLLATKTIVNIQRTAHQWHEFYINIAANTSSSKIKALHTWLQ-NFAKGKDKPE----GLYP-RMGFSLTSIEDCNRLNIRIIFRQRGNWQASTFAEKKWACQSMCTWAIKNGCDSIGISYSMPEVPIRVKQK 792
            +E V   V  F   RSL LTL D E I +K+G L+  +   V+    L I G D+ +L +T+ S  +A SF+  +SAS    S++F+FVT+ YDVGD V+  +D+          V ++++LTTVF+RWD Q   + N ++A K I N  R++   H   I ++ +T   K+  +   +     +G+        GL P  + + +  + D NRL++ ++ +QR N   S    +++   ++    +   C+  GISY++P  P+ V QK
Sbjct:  747 KEFVDRTVDIFVQRRSLQLTLGDYEAILKKVGYLLSVVSAVVVFFVALRILGYDIGSLVLTWLSLAVAFSFLFGSSASAFFESIVFVFVTKAYDVGDPVYFVDDTGGEDW---YIVTRINMLTTVFRRWDGQATLIANNIMAKKAIRNQWRSSRYLHHTMIAVSVDTPMEKLDQMKNGIAAGLRRGRHCHRHGLGGLLPDTVDYQIKGLTDGNRLSVFVVCQQREN---SANMGRRFGNSNLFHKLLARECNRHGISYTLPAQPL-VAQK 1009          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20974.6060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX37_ECTSI6.150e-12574.72Small Conductance Mechanosensitive Ion channel n=1... [more]
A0A6H5JBC1_9PHAE1.720e-12274.34EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D7FX36_ECTSI2.350e-10074.55Small Conductance Mechanosensitive Ion channel n=1... [more]
A0A6H5JDS1_9PHAE1.350e-9161.25EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835YNP7_9STRA4.980e-7746.82Mechanosensitive ion channel-domain-containing pro... [more]
A0A835Z0M4_9STRA6.340e-4938.98Mechanosensitive ion channel-domain-containing pro... [more]
A0A835YNU8_9STRA2.000e-3031.15Mechanosensitive ion channel-domain-containing pro... [more]
A0A0L0TD20_ALLM39.970e-2931.25EF-hand domain-containing protein n=2 Tax=Allomyce... [more]
A0A058ZGC3_FONAL1.310e-2527.60EF-hand domain-containing protein n=1 Tax=Fonticul... [more]
A0A6H5JSR3_9PHAE9.770e-2531.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20974contigH-elongata_contig20974:2990..6522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score388.7
Seed ortholog evalue2.3e-105
Seed eggNOG ortholog2880.D7FX37
KEGG koko:K02575,ko:K22048
KEGG TC1.A.23.4,2.A.1.8
KEGG Pathwayko00910,map00910
KEGG ModuleM00615
EggNOG free text desc.mechanosensitive ion channel activity
EggNOG OGsCOG0668@1,KOG4629@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Hectar predicted targeting categorysignal anchor
Exons6
Model size801
Cds size795
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930171.8675892-CDS-H-elongata_contig20974:2989..31131622930171.8675892-CDS-H-elongata_contig20974:2989..3113Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20974 2990..3113 -
1691679308.0089812-CDS-H-elongata_contig20974:2989..31131691679308.0089812-CDS-H-elongata_contig20974:2989..3113Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20974 2990..3113 -
1622930171.8815455-CDS-H-elongata_contig20974:3320..34261622930171.8815455-CDS-H-elongata_contig20974:3320..3426Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20974 3321..3426 -
1691679308.0213053-CDS-H-elongata_contig20974:3320..34261691679308.0213053-CDS-H-elongata_contig20974:3320..3426Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20974 3321..3426 -
1622930171.8933504-CDS-H-elongata_contig20974:3896..39811622930171.8933504-CDS-H-elongata_contig20974:3896..3981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20974 3897..3981 -
1691679308.0310552-CDS-H-elongata_contig20974:3896..39811691679308.0310552-CDS-H-elongata_contig20974:3896..3981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20974 3897..3981 -
1622930171.9077175-CDS-H-elongata_contig20974:5338..54281622930171.9077175-CDS-H-elongata_contig20974:5338..5428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20974 5339..5428 -
1691679308.0406756-CDS-H-elongata_contig20974:5338..54281691679308.0406756-CDS-H-elongata_contig20974:5338..5428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20974 5339..5428 -
1622930171.9218967-CDS-H-elongata_contig20974:5811..60751622930171.9218967-CDS-H-elongata_contig20974:5811..6075Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20974 5812..6075 -
1691679308.0494475-CDS-H-elongata_contig20974:5811..60751691679308.0494475-CDS-H-elongata_contig20974:5811..6075Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20974 5812..6075 -
1622930171.9357018-CDS-H-elongata_contig20974:6390..65161622930171.9357018-CDS-H-elongata_contig20974:6390..6516Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20974 6391..6516 -
1691679308.0596926-CDS-H-elongata_contig20974:6390..65161691679308.0596926-CDS-H-elongata_contig20974:6390..6516Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20974 6391..6516 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930171.9587958-UTR-H-elongata_contig20974:6516..65221622930171.9587958-UTR-H-elongata_contig20974:6516..6522Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20974 6517..6522 -
1691679308.068568-UTR-H-elongata_contig20974:6516..65221691679308.068568-UTR-H-elongata_contig20974:6516..6522Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20974 6517..6522 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20974.6060.1prot_H-elongata_contig20974.6060.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20974 2990..6516 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20974.6060.1

>prot_H-elongata_contig20974.6060.1 ID=prot_H-elongata_contig20974.6060.1|Name=mRNA_H-elongata_contig20974.6060.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=265bp
MVLGVVGTFKDHRSLALTLQDSEHIARKLGLLIMTLIVFVLIFVWLAIWG
ADVVNLSVTFASFLIAISFMISTSASNLVTSVLFIFVTRLYDVGDRVHIY
NDSQTNTTPTNVTVVKVDLLTTVFKRWDEQIFYMPNYLLATKTIVNIQRT
AHQWHEFYINIAANTSSSKIKALHTWLQNFAKGKDKPEGLYPRMGFSLTS
IEDCNRLNIRIIFRQRGNWQASTFAEKKWACQSMCTWAIKNGCDSIGISY
SMPEVPIRVKQKIH*
back to top

mRNA from alignment at H-elongata_contig20974:2990..6522-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20974.6060.1 ID=mRNA_H-elongata_contig20974.6060.1|Name=mRNA_H-elongata_contig20974.6060.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3533bp|location=Sequence derived from alignment at H-elongata_contig20974:2990..6522- (Himanthalia elongata Himel1 dioecious)
CAGGAGATGGTCCTTGGCGTGGTGGGGACGTTCAAGGATCACAGGAGCCT GGCGCTGACTCTGCAGGACAGCGAGCATATCGCGCGAAAGCTCGGCCTTC TCATCATGACGCTCATCGTCTTCGTCTTGATCGTGAGTTGATGGGAACCC CCCTCCCCCCCCCACGTTGCCCTATTCTCAAGGGACAATTTAAATTCTTT AGAATGGGTGTCGGAAATGGGAAGGAGAAGGCAAAAATTCGATATAGACG CCGCCAACCTTTCGCTGTCGAAACTTCGAGGCATTTCGTAGCCGGTTCTC ATGTCTCCTCTTACTCTAGAAGCTCTTGATGAAAAATAACCCATTAAAAA ATACTGAAGGGAGTCCCACCAACCTGACTTCCGCACACCTGATTCCACTT TGTCCACGCGTACTACTCTAAACTCATTCCCTTGTCCTACTCTGCAGTTC GTGTGGCTGGCGATCTGGGGCGCAGACGTGGTGAACCTCAGCGTGACCTT CGCGTCCTTCCTGATTGCCATCTCCTTCATGATTAGCACCTCTGCCAGCA ACTTGGTGACTTCGGTGCTTTTTATCTTCGTGACGAGACTTTACGACGTC GGGGACAGAGTGCATATATACAACGACAGCCAGACCAATACTACACCCAC CAATGTTACGGTGGTGAAGGTTGACCTCTTGACAACGGTGTTCAAACGCT GGGACGAGCAGGTGGATGGGAAGGGCGAGGCCAAAGATTTTCATTCATAA AGAGGCGTCCGCCTCGTGTGCCCAGTCTCATTTCACCCTCTACCCCTTCT CTTGTTTTTCCTCGACTTTACTCATAATGATGGTGCCTGCGACTGTGATT GTGACCGCCTTCCTTTCGTTCAGAAACCCTCGAGGCGAGGCTGTTGGTGT CAAGGAAAATGCTATTAATAGTATCTTTGGGTGTTTCTCTCGACAGCTAT CGATACGAGAAAATGATGGAGGATATAAGAGGGTACCATACGTAATATAC ACGTACACTCGAGATAATTAAAATAGTTTATACTGTGTGTCACGTCACGT TGTATTGTGCTTCGACGTCTGCGGGGACTGACGCGACGAGACAGATATTC TACATGCCCAATTACCTCCTGGCGACCAAGACGATCGTCAACATCCAGCG AACGGCACACCAGTGGCACGAATTCTATATAAACGTGAGTTGATGGGGGA GGGAAAGGAGGTTGCTTGAAAACTCGATTGAACTTCCTTCATCCATACAC GGTGTATATAGTAGACACCGACTCTCGGCTGTCGAGGGGCGAAGGAACAA GTCTCTTGTTCAGCTGAACTCATCTCCTTCCGTCCAATCATCCTTGATTT CGGCCTTTTTCTATTCCTTTGCGTTGTCTTAGAGCGCTGGTTTCTCTCTC AGATCATTTTGTGTAGAGTCTTCGCCATTGTGGACGACCTTTTCGGTTGC ACCATGAAGGCCACTGAAAATACCCTGTAGGATTAGTGTGCTAAATATAG ATTTGTCTGTCAGTGCACCCATTTTTGGGTGACCATAAATACACTAAACG TCATTTTAGCCAAGGACTGCCCTATTTTTTCGTGGAAATATATTATCGGG ATATACAACGCTGTTTAGACCCTTAATCGGCCTTCGTCTGCGTCTCGATT CTGCCCATCATTCAAGACGCTATTTGATATGCCGTAGCTCGGCTTATTTC CCCTCGACTTCACGAAATATCGCGCCGGCTGTTTTTTTTTGTCGAGCACT TGTAATGGTGTCCGGACTTGAACGTTACCCTGCCTGAAGTTGGGACACCT GCTAAAGGCAGAGTAAAGATACATAGCATAGACTGTACGTGCAAGTGTAA TTTTCATGCGTCAGCCACAACATAACACGCCCACCAATGTACTTCAATCC ATGGTTACTTCGCGGAGCATTTGTCGCCAACTTTCTGTAGGAAAACGTTG CAAGTAGTCACCAATGAATTCATCCTATTAGAAAGGGACTGGAGACGAGT TAAACGAGGGTGAGGCCTGGAGAGACGCAGCTACTCGCACCGCGGAATGT GCAGGACAGGACAGTTGGCGTGTGGTGTCAGGAGAAGAATTAAGATGTCG ATGAAGGCCGCTGAGTGGTGTAAAAAGCAGTGTCCCTTCTCGGGTTAACT TCATACTTGATGAGTTGACTGGTTTGCAGGTTGCCAAAAGGGAGACTTTC CCATGGCAAATTAAGGTCGTTTTTTAACTGAACTGAAATGATGAGTACCC CAGCCCAACCTCATTGAGCCAAAAATGGGTGCCATGACGGACAAGGGTAT ATTTGACGAGTGGGGATTTTGTTGCAAACGCACTCACAAAGTGTCGACGC TTGTGCAATTGAACGATCTTCTCCCGTCTTGAGCCCCCGACAAACCTTGC CCCATCTCCTAGTGATGCATTGATTTTTCTGAATCGCTGCAGAGTCCACC CCACGCCTGTGCTCCGCCCCCTCCCCGAGGACATGTGGTCAATGGCAAAC CTTGAGTACGCCCCTCCGTACGTCTCCTTTCGGGTGGACAGATTGCTGCA AATACTTCTTCTAGCAAGATCAAGGCACTTCATACATGGCTGCAGAACTT CGCTAAGGGTAAAGACAAGCCGGAAGGTATGACAACCACGAGACAAGTAT GTCAAGACAAAATTAACTACTTACCTAACACATGGCCCTCTCCTTGTTTG GTGCTTTTGTAAAGCTCTGTCTCCGCCTCTACCGGGTGGTTTCGCACGCA GTGATTAGACGTGACAGGGGAAGTTTTCTATGGTATTTGCGTTGCGGTAC AGTTATGCGTATTTGTGTCTCTTGTCTTGGTGTGTATAAAGGCGTCGAAG CCTCTCTCCCTACAAACACTGGCAGAGAGTTCAAAGTGTATTTTTAGCTC ACCTTCTCAACCTTTTCCCTGCAAAGGGCCGGCGAGCGTATTTATCTTGC CTCAGGCGATCCACGCAGATGCTGCCCACTTGCTCGCGCGCTTACCAGTT TGCCGAGTCTAGGAAAACTGCACATACACTGGCGGTCAAACACAGTTCCT GAGATTCCTCTTATCGTTTCACCCCGCGTCCATTTCTTTTCCCCAGGGCT ATACCCGCGCATGGGGTTCTCCCTCACCAGCATTGAGGACTGTAACAGGC TTAACATTAGGATAATATTCCGGCAGAGGGGCAACTGGCAGGCGAGTACA TTGTCCGGTCTCTTGGATAGTGCTGCATGTCGTTAAGATTTGGGGGTGAG ATAATAGATTTTGACTACCTGCATTACGACCGACTTCCTCCTCCCCAGCC TCGCACCCCGCCGCCGATTCCTTGAGAGCTCGCAGTCTTTTCTTACTCCC GTTGTGTTGCCAATTTTGTGCGTCTATGCTTCGCGGGTGGACTCTACCGG GGAGCAGAGCGCGGAGAAGAAGTGGGCATGCCAGAGCATGTGCACCTGGG CGATCAAGAACGGCTGCGACAGTATTGGGATCTCGTACTCTATGCCCGAA GTACCTATCCGCGTAAAGCAGAAAATCCACTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig20974:2990..6522-

>mRNA_H-elongata_contig20974.6060.1 ID=mRNA_H-elongata_contig20974.6060.1|Name=mRNA_H-elongata_contig20974.6060.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1590bp|location=Sequence derived from alignment at H-elongata_contig20974:2990..6522- (Himanthalia elongata Himel1 dioecious)
ATGGTCCTTGGCGTGGTGGGGACGTTCAAGGATCACAGGAGCCTGGCGCT
GACTCTGCAGGACAGCGAGCATATCGCGCGAAAGCTCGGCCTTCTCATCA
TGACGCTCATCGTCTTCGTCTTGATCATGGTCCTTGGCGTGGTGGGGACG
TTCAAGGATCACAGGAGCCTGGCGCTGACTCTGCAGGACAGCGAGCATAT
CGCGCGAAAGCTCGGCCTTCTCATCATGACGCTCATCGTCTTCGTCTTGA
TCTTCGTGTGGCTGGCGATCTGGGGCGCAGACGTGGTGAACCTCAGCGTG
ACCTTCGCGTCCTTCCTGATTGCCATCTCCTTCATGATTAGCACCTCTGC
CAGCAACTTGGTGACTTCGGTGCTTTTTATCTTCGTGACGAGACTTTACG
ACGTCGGGGACAGAGTGCATATATACAACGACAGCCAGACCAATACTACA
CCCACCAATGTTACGGTGGTGAAGGTTGACCTCTTGACAACGGTGTTCAA
ACGCTGGGACGAGCAGTTCGTGTGGCTGGCGATCTGGGGCGCAGACGTGG
TGAACCTCAGCGTGACCTTCGCGTCCTTCCTGATTGCCATCTCCTTCATG
ATTAGCACCTCTGCCAGCAACTTGGTGACTTCGGTGCTTTTTATCTTCGT
GACGAGACTTTACGACGTCGGGGACAGAGTGCATATATACAACGACAGCC
AGACCAATACTACACCCACCAATGTTACGGTGGTGAAGGTTGACCTCTTG
ACAACGGTGTTCAAACGCTGGGACGAGCAGATATTCTACATGCCCAATTA
CCTCCTGGCGACCAAGACGATCGTCAACATCCAGCGAACGGCACACCAGT
GGCACGAATTCTATATAAACATATTCTACATGCCCAATTACCTCCTGGCG
ACCAAGACGATCGTCAACATCCAGCGAACGGCACACCAGTGGCACGAATT
CTATATAAACATTGCTGCAAATACTTCTTCTAGCAAGATCAAGGCACTTC
ATACATGGCTGCAGAACTTCGCTAAGGGTAAAGACAAGCCGGAAGATTGC
TGCAAATACTTCTTCTAGCAAGATCAAGGCACTTCATACATGGCTGCAGA
ACTTCGCTAAGGGTAAAGACAAGCCGGAAGGGCTATACCCGCGCATGGGG
TTCTCCCTCACCAGCATTGAGGACTGTAACAGGCTTAACATTAGGATAAT
ATTCCGGCAGAGGGGCAACTGGCAGGCGAGTACATTGGCTATACCCGCGC
ATGGGGTTCTCCCTCACCAGCATTGAGGACTGTAACAGGCTTAACATTAG
GATAATATTCCGGCAGAGGGGCAACTGGCAGGCGAGTACATTCGCGGAGA
AGAAGTGGGCATGCCAGAGCATGTGCACCTGGGCGATCAAGAACGGCTGC
GACAGTATTGGGATCTCGTACTCTATGCCCGAAGTACCTATCCGCGTAAA
GCAGAAAATCCACTGACGCGGAGAAGAAGTGGGCATGCCAGAGCATGTGC
ACCTGGGCGATCAAGAACGGCTGCGACAGTATTGGGATCTCGTACTCTAT
GCCCGAAGTACCTATCCGCGTAAAGCAGAAAATCCACTGA
back to top