mRNA_H-elongata_contig20974.6060.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20974.6060.1 vs. uniprot
Match: D7FX37_ECTSI (Small Conductance Mechanosensitive Ion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX37_ECTSI) HSP 1 Score: 391 bits (1004), Expect = 6.150e-125 Identity = 198/265 (74.72%), Postives = 227/265 (85.66%), Query Frame = 1
Query: 1 QEMVLGVVGTFKDHRSLALTLQDSEHIARKLGLLIMTLIVFVLXXXWLAIWGADVVNLSVTFASFLIAISFMISTSASNLVTSVLFIFVTRLYDVGDRVHIYNDSQTN-TTPTNVTVVKVDLLTTVFKRWDEQIFYMPNYLLATKTIVNIQRTAHQWHEFYINIAANTSSSKIKALHTWLQNFAKGKDKPEGLYPRMGFSLTSIEDCNRLNIRIIFRQRGNWQASTFAEKKWACQSMCTWAIKNGCDSIGISYSMPEVPIRVKQK 792
+EMVLGVVGTFKDHRSLA TLQDSEHIA+KLGL+IM +I+F+L WL+IWGADVV+LSVTFASFLIA SFMI T+ASNL+++VLFIFV+RLYDVGDRVHIY+ S T PTNVTVVKVDL+TTVFKRWDEQ+FYMPN+LLATKTIVNIQRTAHQWHEF I +AA T+ K+ AL T LQ F+K KDKPEGLY RMGFSL IED +L IRI FRQRGNWQ EKKWACQSMCTWAIK+ CDS+ ISY +PEVP+++K+K
Sbjct: 870 EEMVLGVVGTFKDHRSLAHTLQDSEHIAQKLGLIIMCVILFILFFVWLSIWGADVVSLSVTFASFLIAFSFMIGTAASNLMSAVLFIFVSRLYDVGDRVHIYSGSNTQGEEPTNVTVVKVDLMTTVFKRWDEQVFYMPNHLLATKTIVNIQRTAHQWHEFMIQVAATTTPEKLTALQTSLQEFSKSKDKPEGLYTRMGFSLVRIEDSTKLTIRITFRQRGNWQNM---EKKWACQSMCTWAIKSACDSLNISYFLPEVPVQMKKK 1131
BLAST of mRNA_H-elongata_contig20974.6060.1 vs. uniprot
Match: A0A6H5JBC1_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC1_9PHAE) HSP 1 Score: 385 bits (989), Expect = 1.720e-122 Identity = 197/265 (74.34%), Postives = 224/265 (84.53%), Query Frame = 1
Query: 4 EMVLGVVGTFKDHRSLALTLQDSEHIARKLGLLIMTLIVFVLXXXWLAIWGADVVNLSVTFASFLIAISFMISTSASNLVTSVLFIFVTRLYDVGDRVHIYNDSQT-NTTPTNVTVVKVDLLTTVFKRWDEQIFYMPNYLLATKTIVNIQRTAHQWHEFYINIAANTSSSKIKALHTWLQNFAKGKDKPEGLYPRMGFSLTSIEDCNRLNIRIIFRQRGNWQASTFAEKKWACQSMCTWAIKNGCDSIGISYSMPEVPIRVKQKI 795
EMVLGVV TFKDHRSLA TL DSEHIARKLGL+I LI+F+L WL+I G DV++LSVTFASFLIA SFMI T+ASNL+T+VLFIFV+RLYDVGDRVHIY+D QT P NV V KVDL TT F+RWDEQIFY+PN+LLA KTIVNIQRTAHQWHEFYI++AA TSS K++ LH LQ FAK KDKPEGLYPRMGFSLT IED RL+IRI+FRQRGNWQ+ EKKWACQSMCTWAIKN CD+IGI+Y +PEVP+ +K K+
Sbjct: 904 EMVLGVVDTFKDHRSLAHTLHDSEHIARKLGLIIFWLILFILAFVWLSILGFDVLSLSVTFASFLIAFSFMIGTAASNLMTAVLFIFVSRLYDVGDRVHIYDDVQTAGVEPMNVVVTKVDLRTTSFRRWDEQIFYIPNHLLAEKTIVNIQRTAHQWHEFYIHVAATTSSRKLETLHNALQQFAKKKDKPEGLYPRMGFSLTGIEDSTRLSIRIVFRQRGNWQSM---EKKWACQSMCTWAIKNACDTIGITYYLPEVPVVMKNKM 1165
BLAST of mRNA_H-elongata_contig20974.6060.1 vs. uniprot
Match: D7FX36_ECTSI (Small Conductance Mechanosensitive Ion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX36_ECTSI) HSP 1 Score: 324 bits (830), Expect = 2.350e-100 Identity = 164/220 (74.55%), Postives = 187/220 (85.00%), Query Frame = 1
Query: 139 WLAIWGADVVNLSVTFASFLIAISFMISTSASNLVTSVLFIFVTRLYDVGDRVHIYNDSQT-NTTPTNVTVVKVDLLTTVFKRWDEQIFYMPNYLLATKTIVNIQRTAHQWHEFYINIAANTSSSKIKALHTWLQNFAKGKDKPEGLYPRMGFSLTSIEDCNRLNIRIIFRQRGNWQASTFAEKKWACQSMCTWAIKNGCDSIGISYSMPEVPIRVKQKI 795
WL+I G DV++LSVTFASFLIA SFMI T+ASNL+++VLFIFV+RLYDVGDRVHIY+D QT P NV VVKVDL TT F+RWDEQIFY+PN+LLA KTIVNIQRTAHQWHEFYI++AA TSS K++ LH LQ FAK KDKPEGL+PRMGFSLT IED RL+IRIIFRQRGNWQ +KKWACQSMCTWAIKN CD+IGI+Y +PEVPI +K KI
Sbjct: 808 WLSILGFDVLSLSVTFASFLIAFSFMIGTAASNLMSAVLFIFVSRLYDVGDRVHIYDDVQTAGVEPMNVVVVKVDLRTTSFRRWDEQIFYIPNHLLADKTIVNIQRTAHQWHEFYIHVAATTSSQKLETLHDALQKFAKKKDKPEGLHPRMGFSLTGIEDSTRLSIRIIFRQRGNWQNM---DKKWACQSMCTWAIKNACDTIGITYYLPEVPIVMKNKI 1024
BLAST of mRNA_H-elongata_contig20974.6060.1 vs. uniprot
Match: A0A6H5JDS1_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS1_9PHAE) HSP 1 Score: 302 bits (774), Expect = 1.350e-91 Identity = 166/271 (61.25%), Postives = 191/271 (70.48%), Query Frame = 1
Query: 1 QEMVLGVVGTFKDHRSLALTLQDSEHIARKLGLLIMTLIVFVLXXXWLAIWGADVVNLSVTFASFLIAISFMISTSASNLVTSVLFIFVTRLYDVGDRVHIYNDSQTN-TTPTNVTVVKVDLLTTVFKRWDEQIFYMPNYLLATKTIVNIQRTAHQWHEFYINIAANTSSSKIKALHTWLQNFAKGKDKPEGLYPRMGFSLTSIEDCNRLNIRIIFRQRGNWQASTFA------EKKWACQSMCTWAIKNGCDSIGISYSMPEVPIRVKQK 792
+EMVLGVVGTFKDHRSLA TLQDSEHIA+KLGL+IM +I+F+L WL+IWGADVV+LSVTFASFLIA SFMI T+ASNL+++VLFIFV+RLYDVGDRVHIY+ S T PTNVTVVKVDL+TTVFKRWDEQ LQ F+K KDKPEGLYPRMGFSL IED +L IRI FRQRGNWQ A EKKWACQSMCTWAIK+ CDS+ ISY +PE+P+++K+K
Sbjct: 918 EEMVLGVVGTFKDHRSLAHTLQDSEHIAQKLGLIIMCVILFILFFVWLSIWGADVVSLSVTFASFLIAFSFMIGTAASNLMSAVLFIFVSRLYDVGDRVHIYSGSNTRGEEPTNVTVVKVDLMTTVFKRWDEQ--------------------------------------------ASLQEFSKSKDKPEGLYPRMGFSLVRIEDSTKLTIRITFRQRGNWQVGQEAIVVVNMEKKWACQSMCTWAIKSACDSLNISYFLPEIPVQMKEK 1144
BLAST of mRNA_H-elongata_contig20974.6060.1 vs. uniprot
Match: A0A835YNP7_9STRA (Mechanosensitive ion channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNP7_9STRA) HSP 1 Score: 244 bits (622), Expect = 4.980e-77 Identity = 125/267 (46.82%), Postives = 183/267 (68.54%), Query Frame = 1
Query: 1 QEMVLGVVGTFKDHRSLALTLQDSEHIARKLGLLIMTLIVFVLXXXWLAIWGADVVNLSVTFASFLIAISFMISTSASNLVTSVLFIFVTRLYDVGDRV-HIYNDSQTNTTPTNVTVVKVDLLTTVFKRWDEQIFYMPNYLLATKTIVNIQRTAHQWHEFYINIAANTSSSKIKALHTWLQNFAKGKDKPEGLYPRMGFSLTSIEDCNRLNIRIIFRQRGNWQASTFAEKKWACQSMCTWAIKNGCDSIGISYSMPEVPIRV-KQKI 795
+E+V GVV +KDH+SLALTLQDS+ +A KLG ++ I+ L WL I+G D+ L++TFAS L+ +S +I +++NL S++FIFV R +DVGDRV H + D + N V ++DLL T F+ WDE+++Y+PN++LAT+ I+NIQR+ QWHEF+I + A+T S K+ L FA+ +KP G++P + F+LT +E+ NRL IR+ FRQ+GNWQ +KWA QSMCT I N C +GI+Y+ P++P+ KQK+
Sbjct: 19 EEVVNGVVNIYKDHQSLALTLQDSQRMAHKLGEVLGAGILIALIFIWLRIFGRDIFALTLTFASVLVGVSVLIGPASANLFASIVFIFVQRPFDVGDRVFHWFPDGRGEMQ--NAVVTRIDLLITCFRAWDEKVYYLPNHVLATRPIINIQRSGDQWHEFFIQVLASTPSQKLWELKAKCVEFAEKHNKPSGIHPHIQFALTGVENTNRLTIRVCFRQKGNWQ---ILSRKWAVQSMCTNCIVNSCKELGITYTQPQLPLDFNKQKL 280
BLAST of mRNA_H-elongata_contig20974.6060.1 vs. uniprot
Match: A0A835Z0M4_9STRA (Mechanosensitive ion channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0M4_9STRA) HSP 1 Score: 183 bits (464), Expect = 6.340e-49 Identity = 99/254 (38.98%), Postives = 161/254 (63.39%), Query Frame = 1
Query: 4 EMVLGVVGTFKDHRSLALTLQDSEHIARKLGLLIMTLIVFVLXXXWLAIWGADVVNLSVTFASFLIAISFMISTSASNLVTSVLFIFVTRLYDVGDRVHIYNDSQTNTTPTNVTVVKVDLLTTVFKRWDEQIFYMPNYLLATKTIVNIQRTAHQWHEFYINIAANTSSSKIKALHTWLQNFAKGKDKPEGLYPRMGFSLTSIEDCNRLNIRIIFRQRGNWQASTFAEKKWACQSMCTWAIKNGCDSIGISYSMP 765
+++ GVV +KDH++LA TL DS+ + KLG +I L+ FV+ WL+IWG +++S+TF+SFL++ +FM ++A+ LV S++F+FVT YDVGDR+ I + QT+ VVK++LLTTVF+R D Q MPN LL+ ++N+QR+ + W EF + ++A T K+ +L +Q FA + G+Y ++GF+ T I+D +L +RI + R NW +++W + AI + C +GI+++ P
Sbjct: 714 DLLQGVVSIYKDHKNLARTLADSQQMVNKLGQIIGALMSFVMIFIWLSIWGYQFLSISITFSSFLLSFTFMFGSTATALVESIIFVFVTSAYDVGDRLMIPDIMQTSRYH-GCKVVKINLLTTVFERGDGQSLIMPNKLLSQMALINLQRSGNMWFEFVVGVSATTPLHKLHSLKGRMQKFAN--EDSSGIYHKIGFTFTEIQDSAKLVVRINVQGRFNWGD---VKRRWEVHNATCQAIAHHCAELGITFTPP 961
BLAST of mRNA_H-elongata_contig20974.6060.1 vs. uniprot
Match: A0A835YNU8_9STRA (Mechanosensitive ion channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNU8_9STRA) HSP 1 Score: 130 bits (326), Expect = 2.000e-30 Identity = 81/260 (31.15%), Postives = 142/260 (54.62%), Query Frame = 1
Query: 19 VVGTFKDHRSLALTLQDSEHIARKLGLLIMTLIVFVLXXXWLAIWGADVVNLSVTFASFLIAISFMISTSASNLVTSVLFIFVTRLYDVGDRVHIYNDSQTNTTPTNVTVVKVDLLTTVFKRWDEQIFYMPNYLLATKTIVNIQRTAHQWHEFYINIAANTSSSKIKALHTWLQNFAKGKDKPEGLYP----RMGFSLTSIEDCNRLNIRIIFRQRGNWQASTFAEKKWACQSMCTWAIKNGCDSIGISYSMPEVPIRVK 786
+V ++ RSLALTL+D E I KLG +I + F+ +L I+ +++ L VT+ S ++A SF+ +SA+N S +FIFVTR YDVGDRV+I ++ N V ++++LTTVF+RWD+ +PN LA + I N++R+ + ++ T +K++AL +Q +A+ P LY + + + C + + ++ Q+G+WQ + K + S+ + C +G+ Y++P + +K
Sbjct: 882 MVTIYQQRRSLALTLKDYESILIKLGYVISLVWSFIALFVFLWIFDQNILGLGVTWVSLVVAFSFLFGSSAANFFESCVFIFVTRAYDVGDRVYIKDELNDEA---NYVVQRINMLTTVFRRWDDHYTILPNQQLAKREIRNMRRSGDGVMLMTLLVSIATPRAKLEALKERMQEYARAVTGP--LYSCDPNSVDYCCRRVISCTNMEVFFVYSQKGSWQDNYLKVKNFHLMSL---RLAEVCHELGLEYALPTQGVTLK 1133
BLAST of mRNA_H-elongata_contig20974.6060.1 vs. uniprot
Match: A0A0L0TD20_ALLM3 (EF-hand domain-containing protein n=2 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0TD20_ALLM3) HSP 1 Score: 125 bits (313), Expect = 9.970e-29 Identity = 80/256 (31.25%), Postives = 134/256 (52.34%), Query Frame = 1
Query: 4 EMVLGVVGTFKDHRSLALTLQDSEHIARKLGLLIMTLIVFVLXXXWLAIWGADVVNLSVTFASFLIAISFMISTSASNLVTSVLFIFVTRLYDVGDRVHIYNDSQTNTTPTNVTVVKVDLLTTVFKRWDEQIFYMPNYLLATKTIVNIQRTAHQWHEFYINIAANTSSSKIKALHTWLQNF--AKGKDKPEGLYPRMGFSLTSIEDCNRLNIRIIFRQRGNWQASTFAEKKWACQSMCTWAIKNGCDSIGISYSMP 765
E+V V + D LA D + KL + ++ + + +WG DV + V SFL+A+SF ++ N+ SV+F+F T +DVGDRV+I D N+ V ++ LL+T F+R D I Y PN++L TK I+N++R+ +++A NT + KI AL L +F A +D GLY ++ +E+ NRL +R+ + NWQ S +K+W ++ A+++ + + Y++P
Sbjct: 636 ELVEAVQAIYADCLDLAKARTDLAVVLSKLDRALWSVSLLITVVCSCIVWGVDVAKVLVPLGSFLVALSFAFGSTVRNMFESVVFVFSTHAFDVGDRVYIDQD--------NLVVREIGLLSTTFERADGAIIYAPNFVLQTKPILNVRRSQPMSETIKVHVAFNTPTHKIYALEALLNDFLRAHSRDYLGGLYVQV----FELENVNRLELRMFLDHKSNWQDS---KKRWVRRTKFMAALRDAMMQLSLEYTLP 876
BLAST of mRNA_H-elongata_contig20974.6060.1 vs. uniprot
Match: A0A058ZGC3_FONAL (EF-hand domain-containing protein n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058ZGC3_FONAL) HSP 1 Score: 116 bits (290), Expect = 1.310e-25 Identity = 69/250 (27.60%), Postives = 134/250 (53.60%), Query Frame = 1
Query: 1 QEMVLGVVGTFKDHRSLALTLQDSEHIARKLGLLIMTLIVFVLXXXWLAIWGADVVNLSVTFASFLIAISFMISTSASNLVTSVLFIFVTRLYDVGDRVHIYNDSQTNTTPTNVTVVKVDLLTTVFKRWDEQIFYMPNYLLATKTIVNIQRTAHQWHEFYINIAANTSSSKIKALHTWLQNFAKGKDKPEGLYPRMGFSLTSIEDCNRLNIRIIFRQRGNWQASTFAEKKWACQSMCTWAIKNGCDSIGI 750
++M + +++ ++L+ +L+DS + L + +++ L +L I+G ++ + V AS ++++SF+ SA + +V+++FV YDVGDRV I + N V ++++ TVF+RWDEQ F++PN++L K ++NI+R+ +Q H FY+ + A+T+S ++ L +Q + + + PE + F L ++ R+ + I Q NWQ +W ++ C +GI
Sbjct: 2029 RDMKEALQNIYRERKNLSNSLRDSGTMVNTLDRFVSLMLLVCLLFAFLLIFGTNIESTVVPVASLIVSMSFIFGHSAQRMFDNVIYLFVEHPYDVGDRVFIDDH--------NFIVARMNITATVFRRWDEQYFWIPNHILTDKVVINIRRSGNQRHTFYMFLDADTTSEQLGTLRGMMQGWVESQ--PERFARDVDFILFDVDTHGRMQMLITIGQLSNWQDGAV---RWKNRTDSWLFFLQSCRELGI 2265
BLAST of mRNA_H-elongata_contig20974.6060.1 vs. uniprot
Match: A0A6H5JSR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR3_9PHAE) HSP 1 Score: 113 bits (283), Expect = 9.770e-25 Identity = 84/270 (31.11%), Postives = 141/270 (52.22%), Query Frame = 1
Query: 1 QEMVLGVVGTFKDHRSLALTLQDSEHIARKLGLLIMTLIVFVLXXXWLAIWGADVVNLSVTFASFLIAISFMISTSASNLVTSVLFIFVTRLYDVGDRVHIYNDSQTNTTPTNVTVVKVDLLTTVFKRWDEQIFYMPNYLLATKTIVNIQRTAHQWHEFYINIAANTSSSKIKALHTWLQ-NFAKGKDKPE----GLYP-RMGFSLTSIEDCNRLNIRIIFRQRGNWQASTFAEKKWACQSMCTWAIKNGCDSIGISYSMPEVPIRVKQK 792
+E V V F RSL LTL D E I +K+G L+ + V+ L I G D+ +L +T+ S +A SF+ +SAS S++F+FVT+ YDVGD V+ +D+ V ++++LTTVF+RWD Q + N ++A K I N R++ H I ++ +T K+ + + +G+ GL P + + + + D NRL++ ++ +QR N S +++ ++ + C+ GISY++P P+ V QK
Sbjct: 747 KEFVDRTVDIFVQRRSLQLTLGDYEAILKKVGYLLSVVSAVVVFFVALRILGYDIGSLVLTWLSLAVAFSFLFGSSASAFFESIVFVFVTKAYDVGDPVYFVDDTGGEDW---YIVTRINMLTTVFRRWDGQATLIANNIMAKKAIRNQWRSSRYLHHTMIAVSVDTPMEKLDQMKNGIAAGLRRGRHCHRHGLGGLLPDTVDYQIKGLTDGNRLSVFVVCQQREN---SANMGRRFGNSNLFHKLLARECNRHGISYTLPAQPL-VAQK 1009 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20974.6060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20974.6060.1 >prot_H-elongata_contig20974.6060.1 ID=prot_H-elongata_contig20974.6060.1|Name=mRNA_H-elongata_contig20974.6060.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=265bp MVLGVVGTFKDHRSLALTLQDSEHIARKLGLLIMTLIVFVLIFVWLAIWGback to top mRNA from alignment at H-elongata_contig20974:2990..6522- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20974.6060.1 ID=mRNA_H-elongata_contig20974.6060.1|Name=mRNA_H-elongata_contig20974.6060.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3533bp|location=Sequence derived from alignment at H-elongata_contig20974:2990..6522- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20974:2990..6522- >mRNA_H-elongata_contig20974.6060.1 ID=mRNA_H-elongata_contig20974.6060.1|Name=mRNA_H-elongata_contig20974.6060.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1590bp|location=Sequence derived from alignment at H-elongata_contig20974:2990..6522- (Himanthalia elongata Himel1 dioecious)back to top |