mRNA_H-elongata_contig20973.6059.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20973.6059.1
Unique NamemRNA_H-elongata_contig20973.6059.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20973.6059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20973contigH-elongata_contig20973:4394..5110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size717
Cds size147
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20973.6059.1prot_H-elongata_contig20973.6059.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20973 4771..4917 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930171.756982-UTR-H-elongata_contig20973:4393..47701622930171.756982-UTR-H-elongata_contig20973:4393..4770Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20973 4394..4770 +
1691679307.97997-UTR-H-elongata_contig20973:4393..47701691679307.97997-UTR-H-elongata_contig20973:4393..4770Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20973 4394..4770 +
1622930171.8029375-UTR-H-elongata_contig20973:4917..51101622930171.8029375-UTR-H-elongata_contig20973:4917..5110Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20973 4918..5110 +
1691679307.9986072-UTR-H-elongata_contig20973:4917..51101691679307.9986072-UTR-H-elongata_contig20973:4917..5110Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20973 4918..5110 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930171.7862413-CDS-H-elongata_contig20973:4770..49171622930171.7862413-CDS-H-elongata_contig20973:4770..4917Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20973 4771..4917 +
1691679307.9896457-CDS-H-elongata_contig20973:4770..49171691679307.9896457-CDS-H-elongata_contig20973:4770..4917Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20973 4771..4917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20973.6059.1

>prot_H-elongata_contig20973.6059.1 ID=prot_H-elongata_contig20973.6059.1|Name=mRNA_H-elongata_contig20973.6059.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
MGSAENNNDNAPTAFVLALAAGMATCLGAAIVFNRRLVSERWDICLLR*
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mRNA from alignment at H-elongata_contig20973:4394..5110+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20973.6059.1 ID=mRNA_H-elongata_contig20973.6059.1|Name=mRNA_H-elongata_contig20973.6059.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=717bp|location=Sequence derived from alignment at H-elongata_contig20973:4394..5110+ (Himanthalia elongata Himel1 dioecious)
TTAACCCGGCACCAATTGATCCGATATCATCTCTCTCTCTATATATATAT
AATATAGGAAATCATTTCACGGGCCGCAAGACTCGTTTACTACAGATATA
CAACATACACATGCACACACTTGCACACATCAATAATCCCCCATCTCTGC
TATTAAGCGAAAGGGACTTCTCTACTGTTAAGTGAGAGGGAGAGAAATAA
GCAATAAACACACACGCAATACCGACGTCTGTCTCCCAAATCAGCAGACA
CTGGTAAAGAGTGACCCCTCTTCTCGCTGTTTGCTGTGGTAGACGTCGTA
GAAAAGGGTGTAATCGCAGGCACGCTACAGCTGGATACTCCTAGGGAAAG
AAAGTCCAGCGATCATCTGAGGAGAGAATGGGGTCAGCCGAAAATAACAA
CGACAATGCGCCGACGGCGTTCGTCCTCGCTTTGGCTGCTGGGATGGCCA
CGTGCTTGGGGGCGGCAATCGTCTTCAACAGACGCCTAGTGAGTGAGCGG
TGGGATATTTGCTTACTACGTTGAGCCTTACCGCTTGTGAACCTGTTTGC
GGTAATATTTGATGCCGATGCGCAATCTCCTCGTGATTGCTCTCCCTTTC
CACATTTTGCGTGGTGGATAGTTGAGGTTATTAGCTTTTGAAGAAGCTCA
TTGATTCGCACTGCTGTGACGACTTTTAGTATGACTGTACTCTGGTCTGC
CCGACGCCGTATAATCC
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Coding sequence (CDS) from alignment at H-elongata_contig20973:4394..5110+

>mRNA_H-elongata_contig20973.6059.1 ID=mRNA_H-elongata_contig20973.6059.1|Name=mRNA_H-elongata_contig20973.6059.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig20973:4394..5110+ (Himanthalia elongata Himel1 dioecious)
ATGGGGTCAGCCGAAAATAACAACGACAATGCGCCGACGGCGTTCGTCCT
CGCTTTGGCTGCTGGGATGGCCACGTGCTTGGGGGCGGCAATCGTCTTCA
ACAGACGCCTAGTGAGTGAGCGGTGGGATATTTGCTTACTACGTTGAATG
GGGTCAGCCGAAAATAACAACGACAATGCGCCGACGGCGTTCGTCCTCGC
TTTGGCTGCTGGGATGGCCACGTGCTTGGGGGCGGCAATCGTCTTCAACA
GACGCCTAGTGAGTGAGCGGTGGGATATTTGCTTACTACGTTGA
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