mRNA_H-elongata_contig209729.6058.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig209729.6058.1
Unique NamemRNA_H-elongata_contig209729.6058.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig209729.6058.1 vs. uniprot
Match: A0A2H1VB05_SPOFR (SFRICE_041671 (Fragment) n=1 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A2H1VB05_SPOFR)

HSP 1 Score: 51.6 bits (122), Expect = 7.400e-6
Identity = 28/111 (25.23%), Postives = 53/111 (47.75%), Query Frame = 1 
Query:    1 DQAWVSLITTCNGVAFDIVQGAESPGEAWSKLVQHYHASDLKERRRLTVDFYTMKMELGEHPRKFLLRVDQMVEELERVERPVDPKDVDIVILSGLTPQYDAEVRMLESSS 333
            D+A   +  +        ++ A+S  EAW  L + Y    L  R  L    ++ K+        +L ++ ++  +L  +E P+D + V +++LSGLT  YD  +  +E S+
Sbjct:   25 DKALARIALSLTPAVIPYIRTAKSAHEAWKILQKAYEGRGLSRRLGLLRSLFSTKLSENSSMEVYLNKIKEISHQLNEIESPLDDEFVAVIMLSGLTDDYDPLIMAIEHST 135
[Close]
BLAST of mRNA_H-elongata_contig209729.6058.1 vs. uniprot
Match: UPI00103F0D66 (uncharacterized protein LOC114362197 n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103F0D66)

HSP 1 Score: 50.4 bits (119), Expect = 3.290e-5
Identity = 28/93 (30.11%), Postives = 48/93 (51.61%), Query Frame = 1 
Query:   55 VQGAESPGEAWSKLVQHYHASDLKERRRLTVDFYTMKMELGEHPRKFLLRVDQMVEELERVERPVDPKDVDIVILSGLTPQYDAEVRMLESSS 333
            ++ A+S  EAW+ L + Y    L  R  L    +  K+        +L ++ ++  +L  +E P+D + V ++ILSGLT  YD  +  +E SS
Sbjct:   71 IRTAKSAHEAWTILQKTYEGRGLSRRLGLLRSLFNTKLSECSSMEVYLNKIKEISHQLSEIESPLDDELVAVIILSGLTDDYDPLIMAIEHSS 163
[Close]
BLAST of mRNA_H-elongata_contig209729.6058.1 vs. uniprot
Match: A0A2H1WMK4_SPOFR (SFRICE_021333 n=1 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A2H1WMK4_SPOFR)

HSP 1 Score: 51.2 bits (121), Expect = 3.660e-5
Identity = 28/111 (25.23%), Postives = 52/111 (46.85%), Query Frame = 1 
Query:    1 DQAWVSLITTCNGVAFDIVQGAESPGEAWSKLVQHYHASDLKERRRLTVDFYTMKMELGEHPRKFLLRVDQMVEELERVERPVDPKDVDIVILSGLTPQYDAEVRMLESSS 333
            D+A   +  +        ++ A+S  EAW  L + Y    L  R  L    +  K+        +L ++ ++  +L  +E P+D + V +++LSGLT  YD  +  +E S+
Sbjct:   56 DKALARIALSVTPAVIPYIRTAKSAHEAWKILQKAYEGRGLSRRLGLLRSLFNTKLSENSSMEVYLNKIKEISHQLNEIESPLDDEFVAVIMLSGLTDDYDPLIMAIEHST 166
[Close]
BLAST of mRNA_H-elongata_contig209729.6058.1 vs. uniprot
Match: UPI00103FEA55 (uncharacterized protein LOC114361313 n=2 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103FEA55)

HSP 1 Score: 50.8 bits (120), Expect = 5.400e-5
Identity = 30/111 (27.03%), Postives = 53/111 (47.75%), Query Frame = 1 
Query:    1 DQAWVSLITTCNGVAFDIVQGAESPGEAWSKLVQHYHASDLKERRRLTVDFYTMKMELGEHPRKFLLRVDQMVEELERVERPVDPKDVDIVILSGLTPQYDAEVRMLESSS 333
            D+A   +  +        ++ A+S  EAW+ L + Y    L  R  L    +  K+        +L ++ ++  +L  +E P+D + V ++ILSGLT  YD  +  +E SS
Sbjct:   53 DKALARIALSVAPTVIPHIRTAKSAHEAWTILQKTYEGRGLSRRLGLLRSLFNTKLSECSSMEVYLNKIKEISHQLSEIESPLDDELVAVIILSGLTDDYDPLIMAIEHSS 163
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig209729.6058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2H1VB05_SPOFR7.400e-625.23SFRICE_041671 (Fragment) n=1 Tax=Spodoptera frugip... [more]
UPI00103F0D663.290e-530.11uncharacterized protein LOC114362197 n=1 Tax=Ostri... [more]
A0A2H1WMK4_SPOFR3.660e-525.23SFRICE_021333 n=1 Tax=Spodoptera frugiperda TaxID=... [more]
UPI00103FEA555.400e-527.03uncharacterized protein LOC114361313 n=2 Tax=Ostri... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig209729contigH-elongata_contig209729:151..489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size339
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930171.7161155-CDS-H-elongata_contig209729:150..4891622930171.7161155-CDS-H-elongata_contig209729:150..489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209729 151..489 -
1691679307.9701126-CDS-H-elongata_contig209729:150..4891691679307.9701126-CDS-H-elongata_contig209729:150..489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig209729 151..489 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig209729.6058.1prot_H-elongata_contig209729.6058.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig209729 151..489 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig209729.6058.1

>prot_H-elongata_contig209729.6058.1 ID=prot_H-elongata_contig209729.6058.1|Name=mRNA_H-elongata_contig209729.6058.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
DQAWVSLITTCNGVAFDIVQGAESPGEAWSKLVQHYHASDLKERRRLTVD
FYTMKMELGEHPRKFLLRVDQMVEELERVERPVDPKDVDIVILSGLTPQY
DAEVRMLESSSD*
back to top

mRNA from alignment at H-elongata_contig209729:151..489-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig209729.6058.1 ID=mRNA_H-elongata_contig209729.6058.1|Name=mRNA_H-elongata_contig209729.6058.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=339bp|location=Sequence derived from alignment at H-elongata_contig209729:151..489- (Himanthalia elongata Himel1 dioecious)
GATCAAGCTTGGGTATCGTTGATAACCACGTGCAACGGAGTAGCGTTCGA
CATTGTCCAAGGAGCTGAGTCGCCCGGGGAAGCGTGGTCAAAGCTCGTGC
AGCACTACCACGCTAGCGACCTCAAGGAACGACGCCGCCTCACTGTGGAC
TTCTATACGATGAAGATGGAACTCGGCGAGCATCCGCGCAAATTTTTGCT
ACGGGTGGACCAGATGGTCGAGGAACTGGAAAGGGTGGAGCGACCGGTGG
ACCCGAAGGACGTAGACATCGTAATTCTGAGCGGCCTCACCCCCCAGTAC
GACGCCGAGGTTCGAATGCTGGAGAGCTCATCGGACTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig209729:151..489-

>mRNA_H-elongata_contig209729.6058.1 ID=mRNA_H-elongata_contig209729.6058.1|Name=mRNA_H-elongata_contig209729.6058.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig209729:151..489- (Himanthalia elongata Himel1 dioecious)
GATCAAGCTTGGGTATCGTTGATAACCACGTGCAACGGAGTAGCGTTCGA
CATTGTCCAAGGAGCTGAGTCGCCCGGGGAAGCGTGGTCAAAGCTCGTGC
AGCACTACCACGCTAGCGACCTCAAGGAACGACGCCGCCTCACTGTGGAC
TTCTATACGATGAAGATGGAACTCGGCGAGCATCCGCGCAAATTTTTGCT
ACGGGTGGACCAGATGGTCGAGGAACTGGAAAGGGTGGAGCGACCGGTGG
ACCCGAAGGACGTAGACATCGTAATTCTGAGCGGCCTCACCCCCCAGTAC
GACGCCGAGGTTCGAATGCTGGAGAGCTCATCGGACTAGGATCAAGCTTG
GGTATCGTTGATAACCACGTGCAACGGAGTAGCGTTCGACATTGTCCAAG
GAGCTGAGTCGCCCGGGGAAGCGTGGTCAAAGCTCGTGCAGCACTACCAC
GCTAGCGACCTCAAGGAACGACGCCGCCTCACTGTGGACTTCTATACGAT
GAAGATGGAACTCGGCGAGCATCCGCGCAAATTTTTGCTACGGGTGGACC
AGATGGTCGAGGAACTGGAAAGGGTGGAGCGACCGGTGGACCCGAAGGAC
GTAGACATCGTAATTCTGAGCGGCCTCACCCCCCAGTACGACGCCGAGGT
TCGAATGCTGGAGAGCTCATCGGACTAG
back to top