mRNA_H-elongata_contig20964.6056.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20964.6056.1
Unique NamemRNA_H-elongata_contig20964.6056.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20964.6056.1 vs. uniprot
Match: D7FZK3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZK3_ECTSI)

HSP 1 Score: 330 bits (846), Expect = 4.940e-110
Identity = 172/280 (61.43%), Postives = 208/280 (74.29%), Query Frame = 1
Query:  148 GQPAKFMLLGDDLLELQASRPREPQELGSFFIDQTVQEDGSILMASRVDPLFLLLPVLSKHATKWCPLDQALGEAGCGDLRGLRHLDSNKLCDVNDRLGPEELLIRINEDMVIEWLTVKVKRATERFIQVNRKMGAQGD----------EGLARGFTIIGTA-GADGTAEAEAECPQQALEAVCEYLDEGWAGKLAAKFGTERARLFGGNTSAPKKRKGVWDESMEADRYLELTHGGGGKAKTSSEASAAPG-AKKPMSQAQKKLTKVNKKGMKSITSFF 951
            G+  KFM++GD+LLELQ +RPREPQEL SFFIDQ VQ+DG++  ASRVDPLFLLLPVL+KHAT+WCPL QA+ E GCG LRGLRHLD++KLCDVNDR+GP++LLIRINE+ V+ WLT KV+RAT RF ++    G +             G AR F  I     A    E EAEC Q+ALEAVCEYL + WA KLA +FGTER  LFGG ++A KKRK VW+E+ E DR LEL+HG GG  K  +EA+AA   AK+P+S AQ+ L KVNKKGMKSI+SFF
Sbjct:    7 GEATKFMMVGDNLLELQVARPREPQELASFFIDQAVQQDGAVHAASRVDPLFLLLPVLAKHATRWCPLAQAMAEGGCGSLRGLRHLDADKLCDVNDRMGPDDLLIRINEESVLAWLTAKVERATRRFTELATGGGEESGWAXXXXXXXGAGFARDFQAIAAPMDARMQKEVEAECKQRALEAVCEYLGDEWATKLAERFGTERGVLFGGRSTATKKRKTVWEETAETDRNLELSHGSGGGQKAKTEAAAAATKAKQPLSHAQRSLAKVNKKGMKSISSFF 286          
BLAST of mRNA_H-elongata_contig20964.6056.1 vs. uniprot
Match: A0A835YS23_9STRA (Ribonuclease H2, subunit B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS23_9STRA)

HSP 1 Score: 165 bits (418), Expect = 1.920e-45
Identity = 113/299 (37.79%), Postives = 151/299 (50.50%), Query Frame = 1
Query:  136 HPRTGQPAKFMLLGD-------DLLELQASRPREPQELGSFFIDQTVQEDGSILMASRVDPLFLLLPVLSKHATKWCPLDQALGEAGCGDLRGLRHLDSNKLCDVNDRLGPEELLIRINEDMVIEWLTVKVKRATERFIQVNRKMGAQGD-------EGLARGFT--------II--GTAGADGTAEAEAECPQQALEAVCEYLDEGWAGKLAAKFGTERARLFGGNTSAPKKRKG---VWDESMEADRYLELTHGGGGKAKTSSEASAAPGAKKPMSQAQKKLTKVNKKGMKSITSFF 951
            HPRTG+  K++L          D+LELQ +R   P    SFF+ Q VQ DG++ MA+RVDP  LLLP+++    +W PL Q L EA    L   RHL ++K+CDVNDRLGP+ +L R+NE   + WL  KV R     +      GA  D       EG+A GF+        +I    A A+      A   + ALE VC+Y+   WA ++AA+     A L         KRK     W+   E DR L L+ G G K +   + + AP AK        KL KVN KGMKS+ + F
Sbjct:    3 HPRTGEKVKWLLRPTHDEPGSLDVLELQVTRVA-PTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDRWIPLGQQLQEARLAWLLRCRHLGADKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAH-LDGGAHGGAAADDANAGAVEGMAAGFSGNAAPNDAVIDPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAALLEARGGGGIKRKAPATAWEACREEDRNLSLSLGNGNKGEAGGKKAKAPPAKS-------KLAKVNTKGMKSLATLF 292          
BLAST of mRNA_H-elongata_contig20964.6056.1 vs. uniprot
Match: A0A7S2XY24_9STRA (Ribonuclease H2 subunit B n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY24_9STRA)

HSP 1 Score: 153 bits (387), Expect = 2.460e-40
Identity = 113/311 (36.33%), Postives = 153/311 (49.20%), Query Frame = 1
Query:  121 VAEFPHPRTGQPAKFMLLGDDLLELQASRPREPQELGSFFIDQTVQEDGSILMASRVDPLFLLLPVLSKHA-TKWCPLDQALGEAGCGD----LRGLRHLDSNKLCDVNDRLGPEELLIRINEDMVIEWLTVKVKRATERFIQVNRKM----GAQGDEG-LARGFTIIGTAGADGTAEAEA--ECPQQALEAVCEYLDEGWAGKLAAKFGTERARLFGGNTSAPK----------------KRKGVWDESMEADRYLELTHGGGGKAKTSSEASAAPGAKKPMSQA------QKKLTKVNKKGMKSITSFF 951
            +    HPR+G+  K+M  G D+LELQ        +  SFFID +V+ D  + + +RVDPL LLLP L+  A  ++ PLDQA+  +   D    L   RHLD +K+CDVND+LGPE +L R+NE  V+ WL  KV+RA     +V  +     G  GD    A GF    T  + G A++    +  +QA++ V EY  E W   L    G + A L   +  A K                +R   W ++   D+ LE T G G     SS A   P  KK   QA       KKLTK    GMK+I+SFF
Sbjct:   44 IISLKHPRSGELLKYMAAGQDILELQKV---SVSKYSSFFIDNSVKSDAVLWVGTRVDPLLLLLPCLAHQAQARFVPLDQAVSSSSGDDDSLQLLKCRHLDLDKICDVNDKLGPETMLYRLNEGKVVGWLKGKVERAQRHLARVEPRADDPCGGAGDSASFAAGFQAPRTDASAGAADSGGVKKSLRQAVQVVLEYTAERWRAPLLESLGLDEAVLEPPSRKAAKSKQQGKADDEPATAGERRAQQWQDAATLDKALEYTQGLG-----SSGAETDPAKKKQKLQATTRTTGNKKLTKGKVTGMKTISSFF 346          
BLAST of mRNA_H-elongata_contig20964.6056.1 vs. uniprot
Match: A0A4D9DAM5_9STRA (Ribonuclease H2 subunit B n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAM5_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.420e-38
Identity = 115/322 (35.71%), Postives = 154/322 (47.83%), Query Frame = 1
Query:  103 SPLLGRVAEFPHPRTGQPAKFMLL-GDDLLELQASRPREPQELGSFFIDQTVQEDGSILMASRVDPLFLLLPVLSKH-ATKWCPLDQALGEAGCGDLRGLRH---LDSNKLCDVNDRLGPEELLIRINEDMVIEWLTVKVKRATERFIQVNRKMGAQGD---EGLARGFTI----------------IGTAGADGTAEAEAECPQQALEAVCEYLDEGWAGKLAAKFGTERARLFGGNTSAPKKRKGVWDES--MEADRYLELTHG-------------GGGKAKTSSEASAAPGAKKPMSQAQKKLTKVNKKGMKSITSFF 951
            SP LG+V  F HPR G P++++L     L ELQ+ RP    + GS+F++Q V  DG + +AS VDP  +LLPVL KH AT++ PL Q L     G    LR    LD + +CDVND+LG + LL R+N +  ++WL  KV RAT+  + +      Q +    G A GF +                 G  G   T EA  E  + A+E V EYL E WA KL  + G     +  G   A  K++  WD    +E    + LT G                             A+   S AQKKL K N KG+KSI+SFF
Sbjct:   36 SPQLGQVLAFTHPRGGYPSQYLLSPAGQLCELQSFRP-SGSKFGSWFVEQRVVSDGLLYVASPVDPKLILLPVLEKHGATRFSPLAQLLAAEADGAYLALRQCQGLDLHLVCDVNDQLGEDMLLYRLNAEKTMDWLAKKVARATQALVALEAAREEQNNGMGSGFAAGFVVEAGAIQGGSTGEDKRSTGAGGKVQTREATREEARLAVELVSEYLSEAWAVKLQHRCGFSEEEMRQG---AGAKKRSAWDGDGDLEQGTAMALTQGKRXXXXXXXXXXXXXXXXXXXXXXXXMRSAQGGQSLAQKKLAKTNLKGVKSISSFF 353          
BLAST of mRNA_H-elongata_contig20964.6056.1 vs. uniprot
Match: A0A7S3YG07_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YG07_HETAK)

HSP 1 Score: 123 bits (309), Expect = 5.210e-30
Identity = 82/231 (35.50%), Postives = 114/231 (49.35%), Query Frame = 1
Query:  166 MLLGDDLLELQASRPREPQELGSFFIDQTVQEDGSILMASRVDPLFLLLPVLSKHATKWCPLDQAL------GEAGCGDLRGLRHLDSNKLCDVNDRLGPEELLIRINEDMVIEWLTVKVKRATERFIQVNRKMGAQGDEGLARGFTIIG-----TAGADGTAEAEAECPQQALEA--VCEYLDEGWAGKLAAKFGTERAR-LFGGNTSAPKKRKGVWDESMEADRYLELT 816
            ML   D+ E+Q  +     +  SFF+ Q VQ DG+  +ASR+DPLF++LPV SKH T++ PLDQ L      GE     +    HL  + +CDVNDRLGP+ +  RINE  V+ WL +K+K+          K   Q      RGF         ++G+D         P+  L A  + EY+ E W  K+   +    A+ L   + +AP KRK       E DR L LT
Sbjct:    1 MLTVRDVYEIQLLKA---SKYSSFFVGQAVQSDGNFYVASRIDPLFIVLPVFSKHGTRYSPLDQILSAGSVAGEHNFLQIASCNHLKLSNICDVNDRLGPDSIFYRINEAKVVAWLKMKIKQVYCHLKSEKGKSHMQVGGSFVRGFEATSKSTGSSSGSDTKDSVITTDPEFKLAAKLIFEYICEEWQEKVLQSYSGLGAKDLEEASGAAPVKRKAWEAPDAERDRLLALT 228          
BLAST of mRNA_H-elongata_contig20964.6056.1 vs. uniprot
Match: A0A2B4SSH9_STYPI (Ribonuclease H2 subunit B n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SSH9_STYPI)

HSP 1 Score: 106 bits (264), Expect = 7.130e-23
Identity = 90/281 (32.03%), Postives = 142/281 (50.53%), Query Frame = 1
Query:  127 EFPHPRTGQPAKFMLL--GDDLLELQASRPREPQELGSFFIDQTVQEDGSILMASRVDPLFLLLPVLSKHATKWCPLDQALGEAGCGDLRGLRH-LDSNKLCDVNDRLGPEELLI-RINEDMVIEWLTVKVKRATERFIQVNRKMGAQGDEGLARGFTIIGTAGADGTAEAEAECPQQALEAVCEYLDEGWAGKLAAKFGTERARLFGGNTSAPKKRKGVWDESMEA--DRYLELTHGGGGKAKTSSEASAAPGAKKPMSQAQKKLTKVNKKGMKSITSFF 951
            + PHPRTG   +F+L   G+ + E+     +  +E  S+FI+ +VQ+DGS+ + + VDPLFL+LP L+K++ K+  LDQ L +     +  L   L S+++ ++ D  G ++L + R+N D    WL  KV++ T   + ++   G    +G      +      D T    ++  + A   V EYL   W+ +L    G             P KR  V DE  EA  D   E +      +KT S+ +A       ++ AQK L+KV+KKGMKSI+SFF
Sbjct:   41 KIPHPRTGNNQQFLLTHSGEKIFEVL----KFTEEPRSWFIEDSVQKDGSLFVITPVDPLFLVLPYLTKYSQKFRTLDQLLLDDEHPPICRLTGCLSSDEILNICDVKGDDDLQVFRLNNDKTTAWLKAKVEQ-TANSLSLS---GVHVSKGSQSATFVRSRRHIDAT---RSDFVRYAFGLVSEYLSLRWSERLKESLGITDEAQLSSPEEPPTKRAKVTDEIPEATEDYSKEFSKL---NSKTESDKTATK-----LTAAQKSLSKVDKKGMKSISSFF 302          
BLAST of mRNA_H-elongata_contig20964.6056.1 vs. uniprot
Match: UPI00106D86B5 (ribonuclease H2 subunit B-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D86B5)

HSP 1 Score: 102 bits (254), Expect = 1.700e-21
Identity = 83/280 (29.64%), Postives = 138/280 (49.29%), Query Frame = 1
Query:  130 FPHPRTGQPAKFMLLGDDLLELQASRPREPQELGSFFIDQTVQEDGSILMASRVDPLFLLLPVLSKHATKWCPLDQALGEAGCGDLRGLRH-LDSNKLCDVNDRLGPEELLI-RINEDMVIEWLTVKVKRATERFIQVNR-KMGAQGDEGLARGFTIIGTAGADGTAEAEAECPQQALEAVCEYLDEGWAGKLAAKFGTERARLFGGNTSAPKKRKGVWDESMEA---DRYLELTHGGGGKAKTSSEASAAPGAKKPMSQAQKKLTKVNKKGMKSITSFF 951
             PHP+TG   +++L  +     +  +  E     S+FID +V +DG++   +++D LF++LP L   +TK+  L+  L E+   ++  L H +    LC V D  G E+L++ ++N D VI WL  KV +  ++  Q +    GAQ         T + ++ + G  +   +    A   V +Y+ + W+ KL A  G     + G +   P  +K   DES+ A   + Y +       KAK + + +        ++ AQK L KVN KGMKSI+SFF
Sbjct:   43 LPHPKTGHIQQYLLSKNKQEISEILKFNETPR--SWFIDNSVLQDGNLYFGTKIDALFMVLPSLKSTSTKFMTLEHILQESDNNNICELSHCITKEDLCLVTDMKGEEDLIVCKLNHDKVISWLEKKVYQTEDQLKQASICTSGAQSS-------TFVRSSKSRGNTQ---DYLGYAFGLVSDYISDYWSQKLKASLGIND-EISGSSEEEPACKKVKLDESLAAKPNEDYSKFF----AKAKATDQNTNVK-----LTAAQKSLAKVNTKGMKSISSFF 300          
BLAST of mRNA_H-elongata_contig20964.6056.1 vs. uniprot
Match: A0A6P8HJ46_ACTTE (Ribonuclease H2 subunit B n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HJ46_ACTTE)

HSP 1 Score: 101 bits (251), Expect = 4.340e-21
Identity = 96/306 (31.37%), Postives = 146/306 (47.71%), Query Frame = 1
Query:   67 PTQRQNGSSG--DSSPLLGRVAEFPHPRTGQPAKFMLLG--DDLLELQ--ASRPREPQELGSFFIDQTVQEDGSILMASRVDPLFLLLPVLSKHATKWCPLDQALGEAGCGDLRGLRH-LDSNKLCDVNDRLGPEEL-LIRINEDMVIEWLTVKVKRATERF--IQVNRKMGAQGDEGLARGFTIIGTAGADGTAEAEAECPQQALEAVCEYLDEGWAGKLAAKFGT-ERARLFGGNTSAPKKRKGVWDESMEADRYLELTHGGGGKAKTSSEASAAPGAKKPMSQAQKKLTKVNKKGMKSITSFF 951
            P    NGSS   D  P   ++    HPRT +   F++    D + E+   A  PR      S+FI+ +VQ+DGS+L+ + +DP+FL +P L+++ TK+  +DQ L +     +  L   + S+ L +V D  G ++L   R+NED +I WL  KV+   ++    ++N   G+Q    +        T           +  + +   VC+YLD  WA KL A     E   +       P KR  +   + +A   LE       K KT +  S  PG    M+ AQK L+KVNK GMKS+ SFF
Sbjct:   23 PETALNGSSDGKDDEPTFVKLL---HPRTEKECMFLMSRNKDAVYEIMKFAEGPR------SWFIEDSVQKDGSLLVTTSIDPIFLCIPYLTRNKTKFRTIDQVLMDDDYPAVSSLSMCVSSDVLSNVCDCKGNDDLQAYRLNEDKLIAWLKTKVECVADKLESSKINVSKGSQSATFVRSKLQSNVT---------RDDYLRYSCGIVCQYLDSSWADKLQAALNLPEEKTVLSSPEEPPSKRTKL---NNDAGTVLEDYSKEYEKIKTKT-TSKTPG---KMTAAQKSLSKVNKNGMKSMASFF 303          
BLAST of mRNA_H-elongata_contig20964.6056.1 vs. uniprot
Match: A0A4P9XKZ7_9FUNG (Ribonuclease H2 subunit B n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XKZ7_9FUNG)

HSP 1 Score: 96.7 bits (239), Expect = 1.390e-19
Identity = 90/294 (30.61%), Postives = 131/294 (44.56%), Query Frame = 1
Query:  130 FPHPRTGQPAKFMLLGDDLLELQASRPREPQELGSFFIDQTVQEDGSILMASRVDPLFLLLPVLSK-------HATKWCPLDQALGEA-GCGDLRGLRHLDSN--KLCDVNDRLGPEELLIRINEDMVIEWLTVKVKRATERF------IQVNR----KMGAQGDEGLARGFTIIGTAGADGTAEAEAECPQQALEAVCEYLDEGWAGKLAAKFGTERARLFGGNTSAPKKRKGVWDESMEADRYLELTHGGGGKAKTSSEASAAPGAKKPMSQAQKKLTKVNKKGMKSITSFF 951
             PHPRTG+  +F L G  LLE+Q   P       S+ +D +VQ+DGSI+M + VDPLF+LLPVL          A  +C LD  L    G   L  ++ L+    ++CDV    G   +  R+N+  VI WL  KV R   +F      +Q+ R    + G Q + GL +   +                   A+  V +YL++ W  +L   + +    +     +  K+RK V   +  A      +  G  K KT   A+AA   KKP          VN KGM S+ S+F
Sbjct:   21 LPHPRTGERIQFALDGPMLLEMQRMAP---DAAASWLVDDSVQQDGSIMMFTPVDPLFILLPVLETCRRRKGDSAGVFCALDDLLQTIPGLSVLARVKQLEQKLGRVCDVQAVPGHGNVY-RLNDSKVIGWLQRKVNRIVSKFAGFATLVQMERVYYAEPGVQDNVGLQQAIRVW-----------------LAITVVDDYLNQAWRDRLRTAYESTLEPVV----ALLKRRKRVAAAAQNASLAKAASTTGTRKGKT---AAAAARGKKP----------VNTKGMMSLRSYF 276          
BLAST of mRNA_H-elongata_contig20964.6056.1 vs. uniprot
Match: A7RQZ3_NEMVE (Ribonuclease H2 subunit B n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RQZ3_NEMVE)

HSP 1 Score: 95.9 bits (237), Expect = 4.630e-19
Identity = 85/291 (29.21%), Postives = 140/291 (48.11%), Query Frame = 1
Query:   97 DSSPLLGRVAEFPHPRTGQPAKFMLLGDDLLELQASRPREPQELGSFFIDQTVQEDGSILMASRVDPLFLLLPVLSKHATKWCPLDQALGEAGCGDLRGLRH-LDSNKLCDVNDRLGPEELLI-RINEDMVIEWLTVKVKRATERFI--QVNRKMGAQGDEGLARGFTIIGTAGADGTAEAEAECPQQALEAVCEYLDEGWAGKL--AAKFGTERARLFGGNTSAPKKRKGVWDESMEADRYLELTHGGGGKAKTSSEASAAPGAKKPMSQAQKKLTKVNKKGMKSITSFF 951
            +S PL  ++   PHPRTG+  + +   D+    + ++ ++  E  S+FID TV EDGS+++A+ +D +FL LP L K ++++  LDQ L ++    +  L + +    L  V D  G ++L + RINED  + WL  KV+   +      +N   G+Q          +     +D T E   +  + +   +C+YL   W  KL  A     +       +   P KR  + + S   + Y +       K K+   A   PG    M+  Q+ L+KV+K GMKSI+SFF
Sbjct:   38 ESPPLFAKI---PHPRTGKGVQLLFSSDEKSVCEVAKFKD--EPRSWFIDDTVHEDGSMVIATPIDSVFLCLPYLEKCSSQFRTLDQILIDSKFPSVGKLTNCITHESLTSVCDCKGDDDLHVYRINEDKTMAWLKTKVECVADYLATSDINVSKGSQS------ATFVRSRKHSDVTRE---DHLRYSSGMICDYLSLSWEEKLKKALNLPEKDKEKEVSDEEPPSKRVKLEEGSETVEDYSKEYE----KLKSKIPAGKTPG---KMTAGQRALSKVDKTGMKSISSFF 307          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20964.6056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZK3_ECTSI4.940e-11061.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YS23_9STRA1.920e-4537.79Ribonuclease H2, subunit B n=1 Tax=Tribonema minus... [more]
A0A7S2XY24_9STRA2.460e-4036.33Ribonuclease H2 subunit B n=1 Tax=Fibrocapsa japon... [more]
A0A4D9DAM5_9STRA1.420e-3835.71Ribonuclease H2 subunit B n=1 Tax=Nannochloropsis ... [more]
A0A7S3YG07_HETAK5.210e-3035.50Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2B4SSH9_STYPI7.130e-2332.03Ribonuclease H2 subunit B n=1 Tax=Stylophora pisti... [more]
UPI00106D86B51.700e-2129.64ribonuclease H2 subunit B-like n=1 Tax=Dendronepht... [more]
A0A6P8HJ46_ACTTE4.340e-2131.37Ribonuclease H2 subunit B n=1 Tax=Actinia tenebros... [more]
A0A4P9XKZ7_9FUNG1.390e-1930.61Ribonuclease H2 subunit B n=1 Tax=Thamnocephalis s... [more]
A7RQZ3_NEMVE4.630e-1929.21Ribonuclease H2 subunit B n=1 Tax=Nematostella vec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20964contigH-elongata_contig20964:3257..6386 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score331.6
Seed ortholog evalue3.9e-88
Seed eggNOG ortholog2880.D7FZK3
Preferred nameRNASEH2B
KEGG rclassRC00010,RC00074
KEGG koko:K01937,ko:K10744
KEGG ReactionR00571,R00573
KEGG Pathwayko00240,ko01100,ko03030,map00240,map01100,map03030
KEGG ModuleM00052
GOsGO:0000278,GO:0001701,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006401,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007049,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008284,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009117,GO:0009259,GO:0009636,GO:0009790,GO:0009792,GO:0009892,GO:0009987,GO:0010389,GO:0010468,GO:0010564,GO:0010605,GO:0010629,GO:0015036,GO:0016070,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019222,GO:0019439,GO:0019637,GO:0019693,GO:0022402,GO:0022616,GO:0031974,GO:0031981,GO:0032299,GO:0032501,GO:0032502,GO:0032991,GO:0033260,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0042127,GO:0042221,GO:0043009,GO:0043137,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044786,GO:0046483,GO:0046700,GO:0048145,GO:0048146,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051726,GO:0055086,GO:0055114,GO:0060255,GO:0065007,GO:0070013,GO:0070887,GO:0071704,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097237,GO:0098754,GO:0098869,GO:0140098,GO:1901135,GO:1901360,GO:1901361,GO:1901575,GO:1901576,GO:1901976,GO:1901987,GO:1901990,GO:1902749,GO:1902969,GO:1903047,GO:1903469,GO:1990748,GO:2000001,GO:2001020
EggNOG free text desc.RNA catabolic process
EggNOG OGsKOG4705@1,KOG4705@2759
Ec32 ortholog descriptionRibonuclease H2, subunit B
Ec32 orthologEc-01_010140.1
EC6.3.4.2
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032
Hectar predicted targeting categoryother localisation
Exons5
Model size957
Cds size957
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20964.6056.1prot_H-elongata_contig20964.6056.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20964 3257..6386 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930171.514518-CDS-H-elongata_contig20964:3256..33731622930171.514518-CDS-H-elongata_contig20964:3256..3373Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20964 3257..3373 -
1691679307.8573112-CDS-H-elongata_contig20964:3256..33731691679307.8573112-CDS-H-elongata_contig20964:3256..3373Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20964 3257..3373 -
1622930171.5320985-CDS-H-elongata_contig20964:3721..38481622930171.5320985-CDS-H-elongata_contig20964:3721..3848Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20964 3722..3848 -
1691679307.868931-CDS-H-elongata_contig20964:3721..38481691679307.868931-CDS-H-elongata_contig20964:3721..3848Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20964 3722..3848 -
1622930171.5487552-CDS-H-elongata_contig20964:4222..45021622930171.5487552-CDS-H-elongata_contig20964:4222..4502Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20964 4223..4502 -
1691679307.8844981-CDS-H-elongata_contig20964:4222..45021691679307.8844981-CDS-H-elongata_contig20964:4222..4502Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20964 4223..4502 -
1622930171.564509-CDS-H-elongata_contig20964:5545..58301622930171.564509-CDS-H-elongata_contig20964:5545..5830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20964 5546..5830 -
1691679307.8982537-CDS-H-elongata_contig20964:5545..58301691679307.8982537-CDS-H-elongata_contig20964:5545..5830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20964 5546..5830 -
1622930171.5787625-CDS-H-elongata_contig20964:6238..63861622930171.5787625-CDS-H-elongata_contig20964:6238..6386Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20964 6239..6386 -
1691679307.9126866-CDS-H-elongata_contig20964:6238..63861691679307.9126866-CDS-H-elongata_contig20964:6238..6386Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20964 6239..6386 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20964.6056.1

>prot_H-elongata_contig20964.6056.1 ID=prot_H-elongata_contig20964.6056.1|Name=mRNA_H-elongata_contig20964.6056.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=319bp
MASQRIILVHNEAFSLPSLRSRPTQRQNGSSGDSSPLLGRVAEFPHPRTG
QPAKFMLLGDDLLELQASRPREPQELGSFFIDQTVQEDGSILMASRVDPL
FLLLPVLSKHATKWCPLDQALGEAGCGDLRGLRHLDSNKLCDVNDRLGPE
ELLIRINEDMVIEWLTVKVKRATERFIQVNRKMGAQGDEGLARGFTIIGT
AGADGTAEAEAECPQQALEAVCEYLDEGWAGKLAAKFGTERARLFGGNTS
APKKRKGVWDESMEADRYLELTHGGGGKAKTSSEASAAPGAKKPMSQAQK
KLTKVNKKGMKSITSFFK*
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mRNA from alignment at H-elongata_contig20964:3257..6386-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20964.6056.1 ID=mRNA_H-elongata_contig20964.6056.1|Name=mRNA_H-elongata_contig20964.6056.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3130bp|location=Sequence derived from alignment at H-elongata_contig20964:3257..6386- (Himanthalia elongata Himel1 dioecious)
ATGGCCAGCCAGCGCATAATATTGGTGCACAATGAGGCTTTCAGTCTTCC TTCCCTTAGAAGCCGTCCGACACAGCGACAAAACGGCTCATCCGGCGACA GCAGTCCTCTGCTTGGAAGGGTCGCCGAATTCCCCCACCCTCGGACAGGT GGGTCTCTTTTTACAGCGAAGGATACCACCGCGACGAGGGAGGGTGATAG TGAAAGGAATATGTTAGGTATTGCAAGTGCCCTGATTGCAACCACGATCG CCCCCTTTGTGTGTTTGTCTCAAGGGGACTCGAGCATCTTGGCACGAAGT TGCACAGAGACCCACACAACATTCATGTCATCTCAGTGATCCCAGGGAGA CCTGTACTACTGTATTTCGTTTGTACTTTGAAATCGTGCCGAAACCATTC CCCTGCCGCTGTATAGGTTTAGGATAACAGTTGACCCCTTTAGCGCACCT CTGACCCACGTCTGTAACAAGAGATGCGGTCAAAATATTTGTATCATCGT GTAGTTGACCTAATTTTTGAAAAAAAAAACTCTGATCCCAACACCTTTAT AAATAGGACAACCGGCAAAGTTCATGCTCCTCGGGGACGATCTTCTGGAA CTACAAGCGTCAAGGCCACGAGAGCCGCAAGAACTGGGCAGCTTCTTCAT CGACCAGACTGTCCAAGAAGATGGCTCCATTCTAATGGCATCTCGCGTAG ATCCGCTGTTTCTTCTCCTGCCCGTCCTGAGCAAGCACGCCACTAAGTGG TGCCCCCTAGACCAGGCTCTGGGCGAGGCCGGTTGCGGCGATTTGCGTGG TCTGCGGCACCTGGACTCCAATAAGCTCTGCGACGTCAACGGTGGGCTCT TGATGCATTATCAACTACTTCGCTCGTTTCTCCCCCTTGAGACTGAAATA CTTTTATATATTATTTTCCCAAGACTATAGGAAAATAAGCATCAACCTGA TTTGGTTGTCTCTTCCTTGTGGTCAGCTGAGCAGGGAAAATGAATTTATT TGTCCCGTTCGTGCCTGAGAATTTGGTCTCGCGAGACGGGTTCGGCAGTC CCGTCCCGCGTCAGCCTGCTCATTCTCTCAACCCATGCTGAATATGATGC ATACTCCCGGAATCTTCTCCTTTTTCGCGACGGCGTCCATCTCTACCGTC AACCGCCATCGGGCCAATTCCGAATCCATTAGGTCACACAATTGCGTACC GATGGCGTTTACCACCGAAAGTCCACCGACACTGAGCCAGCAGTCTTCCA AGGTAGCTTGCGTAACGGTGCAGCCTATTTAGGTAACCCCGTGGACCAAC TATTGTGCGGCTCTCTTTTCCCACACCCACTTTCCCACACCTACTATTAG TACAGTGAATATGTGCGATACGGTCATAGTATTGGTCAACAGCATCAATT CGATCTCTGCTCGAGCGGATAAACGGATCGTAGCCCGTTACTGAAACACC CAGAATCAGAATAGCTCTAATATTATAATATTAACTCTCCCAGCTACCCA AACTCCGTCCTTCTATCCTTCATTATTCCATGGAAAACCAAGGTCGAAAG CAGCGAAGCAGGGGTACTCGTCCGAGATAGCAGAATAATAACTAGTGGAA CTTCGAAAATATTGGTCAATCTACAGAGTAGTAGTGAATCGCAAGGAATG TAAATAAGCACGAGAATCATGTTCTCCTGTGCAGTATTGTCGAGTGTTTT GTTCTCGATTTTCTTTAGCGAGAGCTTCGTCCAAGCGGTCGAAAACTTAA GTGTAAAACATTAATCCCGCGGATCGAAATCATCCCGCCTAGGCAGCAAA CGCTATGTTTAAATATATACCCGCCGTAACACCGCCGTCCTGACGCTACG ACTTGAAATCCGGCGCCCTGCGAGGTGGTGATAGATCGGCTCGGGCCGGA GGAATTGCTGATCCGCATTAACGAGGATATGGTTATCGAATGGTTGACGG TAAAAGTAAAACGTGCGACCGAGAGATTCATCCAAGTCAATAGGAAAATG GGTGCGCAAGGGGACGAGGGATTAGCCAGAGGATTTACCATTATCGGGAC AGCGGGTGCGGATGGAACGGCAGAGGCGGAGGCGGAGTGCCCGCAGCAGG CGCTAGAGGCCGTGTGCGAGTACCTAGACGAAGGGTGGGCTGGAAAACTG GCCGCAAAATTCGGGTGAGTGGGAAATGCAGTCGCGCTTGAGTTTTCCGA AACCCGAGTGTGTAAACCAGCGGGCTTGTGTCGTATCCTACAATATTAAT TTATGGCTTGAATATTTCCAAATCTCTTCTCGTGTGACGCAAACATTTCT GGAGGCTACCAAGGCAGCGGAGCTGTAGAGAGCTCATCTTGGCTATATGA AAACGATTTTTAATGTTTTGGTTTTAGTCTAGATTTTGAAATCGAGACCG CGGTGTTCCGCCTGTTATCTGCGGTCGATGCCCTCCGCCGACGGCTCCCG CTTCCAAACGCGCATTTTCCCCGTTTTGGCTCCTCTGCAGCAGCACTCTT CCCCCCAACGCCTTCTTTCTCTAATCACGAAATGACAGCACGGAACGGGC GCGCCTGTTCGGTGGGAATACGAGCGCTCCCAAGAAGCGGAAGGGGGTTT GGGACGAATCGATGGAGGCGGATCGATACCTAGAGCTGACGCACGGCGGC GGAGGCAAAGCCAAGGTGACACGCTCCCTATGTCCTGCGTCAGCCTCGCC ACGAACGTTTCACACTCTCCCGTGGCTTTCCTTCGCGCAAAGAGCTTTTG TTTTCTGGCTGTAGAATACCTGGTAGTTAGTACTAGTACATTAGTAGAAC CGCGCGAGTTTATGAGAGGGGTACATGTACGAGGCAAATGAAGTAAAATT CCACGTTACACCGACACCTCTGATACTGGCAATGGCAGAAATTCCAAGAT AGTCTTGAGAACGGGGCTCTCACGTGTCCTTTGCCTCCAATGAAAATTTT CTCTCGTCTACCCCTTCTGCTTGAATTGCACCCTCGGGGTCAAACCCATA CGACATGAAACAGACAAGCTCGGAGGCCTCCGCCGCACCCGGAGCAAAGA AACCGATGAGCCAAGCGCAGAAAAAATTGACCAAGGTCAACAAGAAGGGG ATGAAGTCCATCACAAGCTTCTTTAAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig20964:3257..6386-

>mRNA_H-elongata_contig20964.6056.1 ID=mRNA_H-elongata_contig20964.6056.1|Name=mRNA_H-elongata_contig20964.6056.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1914bp|location=Sequence derived from alignment at H-elongata_contig20964:3257..6386- (Himanthalia elongata Himel1 dioecious)
ATGGCCAGCCAGCGCATAATATTGGTGCACAATGAGGCTTTCAGTCTTCC
TTCCCTTAGAAGCCGTCCGACACAGCGACAAAACGGCTCATCCGGCGACA
GCAGTCCTCTGCTTGGAAGGGTCGCCGAATTCCCCCACCCTCGGACAGAT
GGCCAGCCAGCGCATAATATTGGTGCACAATGAGGCTTTCAGTCTTCCTT
CCCTTAGAAGCCGTCCGACACAGCGACAAAACGGCTCATCCGGCGACAGC
AGTCCTCTGCTTGGAAGGGTCGCCGAATTCCCCCACCCTCGGACAGGACA
ACCGGCAAAGTTCATGCTCCTCGGGGACGATCTTCTGGAACTACAAGCGT
CAAGGCCACGAGAGCCGCAAGAACTGGGCAGCTTCTTCATCGACCAGACT
GTCCAAGAAGATGGCTCCATTCTAATGGCATCTCGCGTAGATCCGCTGTT
TCTTCTCCTGCCCGTCCTGAGCAAGCACGCCACTAAGTGGTGCCCCCTAG
ACCAGGCTCTGGGCGAGGCCGGTTGCGGCGATTTGCGTGGTCTGCGGCAC
CTGGACTCCAATAAGCTCTGCGACGTCAACGGACAACCGGCAAAGTTCAT
GCTCCTCGGGGACGATCTTCTGGAACTACAAGCGTCAAGGCCACGAGAGC
CGCAAGAACTGGGCAGCTTCTTCATCGACCAGACTGTCCAAGAAGATGGC
TCCATTCTAATGGCATCTCGCGTAGATCCGCTGTTTCTTCTCCTGCCCGT
CCTGAGCAAGCACGCCACTAAGTGGTGCCCCCTAGACCAGGCTCTGGGCG
AGGCCGGTTGCGGCGATTTGCGTGGTCTGCGGCACCTGGACTCCAATAAG
CTCTGCGACGTCAACGATCGGCTCGGGCCGGAGGAATTGCTGATCCGCAT
TAACGAGGATATGGTTATCGAATGGTTGACGGTAAAAGTAAAACGTGCGA
CCGAGAGATTCATCCAAGTCAATAGGAAAATGGGTGCGCAAGGGGACGAG
GGATTAGCCAGAGGATTTACCATTATCGGGACAGCGGGTGCGGATGGAAC
GGCAGAGGCGGAGGCGGAGTGCCCGCAGCAGGCGCTAGAGGCCGTGTGCG
AGTACCTAGACGAAGGGTGGGCTGGAAAACTGGCCGCAAAATTCGGATCG
GCTCGGGCCGGAGGAATTGCTGATCCGCATTAACGAGGATATGGTTATCG
AATGGTTGACGGTAAAAGTAAAACGTGCGACCGAGAGATTCATCCAAGTC
AATAGGAAAATGGGTGCGCAAGGGGACGAGGGATTAGCCAGAGGATTTAC
CATTATCGGGACAGCGGGTGCGGATGGAACGGCAGAGGCGGAGGCGGAGT
GCCCGCAGCAGGCGCTAGAGGCCGTGTGCGAGTACCTAGACGAAGGGTGG
GCTGGAAAACTGGCCGCAAAATTCGGCACGGAACGGGCGCGCCTGTTCGG
TGGGAATACGAGCGCTCCCAAGAAGCGGAAGGGGGTTTGGGACGAATCGA
TGGAGGCGGATCGATACCTAGAGCTGACGCACGGCGGCGGAGGCAAAGCC
AAGCACGGAACGGGCGCGCCTGTTCGGTGGGAATACGAGCGCTCCCAAGA
AGCGGAAGGGGGTTTGGGACGAATCGATGGAGGCGGATCGATACCTAGAG
CTGACGCACGGCGGCGGAGGCAAAGCCAAGACAAGCTCGGAGGCCTCCGC
CGCACCCGGAGCAAAGAAACCGATGAGCCAAGCGCAGAAAAAATTGACCA
AGGTCAACAAGAAGGGGATGAAGTCCATCACAAGCTTCTTTAAGTAGACA
AGCTCGGAGGCCTCCGCCGCACCCGGAGCAAAGAAACCGATGAGCCAAGC
GCAGAAAAAATTGACCAAGGTCAACAAGAAGGGGATGAAGTCCATCACAA
GCTTCTTTAAGTAG
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