mRNA_H-elongata_contig20964.6056.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20964.6056.1 vs. uniprot
Match: D7FZK3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZK3_ECTSI) HSP 1 Score: 330 bits (846), Expect = 4.940e-110 Identity = 172/280 (61.43%), Postives = 208/280 (74.29%), Query Frame = 1
Query: 148 GQPAKFMLLGDDLLELQASRPREPQELGSFFIDQTVQEDGSILMASRVDPLFLLLPVLSKHATKWCPLDQALGEAGCGDLRGLRHLDSNKLCDVNDRLGPEELLIRINEDMVIEWLTVKVKRATERFIQVNRKMGAQGD----------EGLARGFTIIGTA-GADGTAEAEAECPQQALEAVCEYLDEGWAGKLAAKFGTERARLFGGNTSAPKKRKGVWDESMEADRYLELTHGGGGKAKTSSEASAAPG-AKKPMSQAQKKLTKVNKKGMKSITSFF 951
G+ KFM++GD+LLELQ +RPREPQEL SFFIDQ VQ+DG++ ASRVDPLFLLLPVL+KHAT+WCPL QA+ E GCG LRGLRHLD++KLCDVNDR+GP++LLIRINE+ V+ WLT KV+RAT RF ++ G + G AR F I A E EAEC Q+ALEAVCEYL + WA KLA +FGTER LFGG ++A KKRK VW+E+ E DR LEL+HG GG K +EA+AA AK+P+S AQ+ L KVNKKGMKSI+SFF
Sbjct: 7 GEATKFMMVGDNLLELQVARPREPQELASFFIDQAVQQDGAVHAASRVDPLFLLLPVLAKHATRWCPLAQAMAEGGCGSLRGLRHLDADKLCDVNDRMGPDDLLIRINEESVLAWLTAKVERATRRFTELATGGGEESGWAXXXXXXXGAGFARDFQAIAAPMDARMQKEVEAECKQRALEAVCEYLGDEWATKLAERFGTERGVLFGGRSTATKKRKTVWEETAETDRNLELSHGSGGGQKAKTEAAAAATKAKQPLSHAQRSLAKVNKKGMKSISSFF 286
BLAST of mRNA_H-elongata_contig20964.6056.1 vs. uniprot
Match: A0A835YS23_9STRA (Ribonuclease H2, subunit B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS23_9STRA) HSP 1 Score: 165 bits (418), Expect = 1.920e-45 Identity = 113/299 (37.79%), Postives = 151/299 (50.50%), Query Frame = 1
Query: 136 HPRTGQPAKFMLLGD-------DLLELQASRPREPQELGSFFIDQTVQEDGSILMASRVDPLFLLLPVLSKHATKWCPLDQALGEAGCGDLRGLRHLDSNKLCDVNDRLGPEELLIRINEDMVIEWLTVKVKRATERFIQVNRKMGAQGD-------EGLARGFT--------II--GTAGADGTAEAEAECPQQALEAVCEYLDEGWAGKLAAKFGTERARLFGGNTSAPKKRKG---VWDESMEADRYLELTHGGGGKAKTSSEASAAPGAKKPMSQAQKKLTKVNKKGMKSITSFF 951
HPRTG+ K++L D+LELQ +R P SFF+ Q VQ DG++ MA+RVDP LLLP+++ +W PL Q L EA L RHL ++K+CDVNDRLGP+ +L R+NE + WL KV R + GA D EG+A GF+ +I A A+ A + ALE VC+Y+ WA ++AA+ A L KRK W+ E DR L L+ G G K + + + AP AK KL KVN KGMKS+ + F
Sbjct: 3 HPRTGEKVKWLLRPTHDEPGSLDVLELQVTRVA-PTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDRWIPLGQQLQEARLAWLLRCRHLGADKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAH-LDGGAHGGAAADDANAGAVEGMAAGFSGNAAPNDAVIDPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAALLEARGGGGIKRKAPATAWEACREEDRNLSLSLGNGNKGEAGGKKAKAPPAKS-------KLAKVNTKGMKSLATLF 292
BLAST of mRNA_H-elongata_contig20964.6056.1 vs. uniprot
Match: A0A7S2XY24_9STRA (Ribonuclease H2 subunit B n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY24_9STRA) HSP 1 Score: 153 bits (387), Expect = 2.460e-40 Identity = 113/311 (36.33%), Postives = 153/311 (49.20%), Query Frame = 1
Query: 121 VAEFPHPRTGQPAKFMLLGDDLLELQASRPREPQELGSFFIDQTVQEDGSILMASRVDPLFLLLPVLSKHA-TKWCPLDQALGEAGCGD----LRGLRHLDSNKLCDVNDRLGPEELLIRINEDMVIEWLTVKVKRATERFIQVNRKM----GAQGDEG-LARGFTIIGTAGADGTAEAEA--ECPQQALEAVCEYLDEGWAGKLAAKFGTERARLFGGNTSAPK----------------KRKGVWDESMEADRYLELTHGGGGKAKTSSEASAAPGAKKPMSQA------QKKLTKVNKKGMKSITSFF 951
+ HPR+G+ K+M G D+LELQ + SFFID +V+ D + + +RVDPL LLLP L+ A ++ PLDQA+ + D L RHLD +K+CDVND+LGPE +L R+NE V+ WL KV+RA +V + G GD A GF T + G A++ + +QA++ V EY E W L G + A L + A K +R W ++ D+ LE T G G SS A P KK QA KKLTK GMK+I+SFF
Sbjct: 44 IISLKHPRSGELLKYMAAGQDILELQKV---SVSKYSSFFIDNSVKSDAVLWVGTRVDPLLLLLPCLAHQAQARFVPLDQAVSSSSGDDDSLQLLKCRHLDLDKICDVNDKLGPETMLYRLNEGKVVGWLKGKVERAQRHLARVEPRADDPCGGAGDSASFAAGFQAPRTDASAGAADSGGVKKSLRQAVQVVLEYTAERWRAPLLESLGLDEAVLEPPSRKAAKSKQQGKADDEPATAGERRAQQWQDAATLDKALEYTQGLG-----SSGAETDPAKKKQKLQATTRTTGNKKLTKGKVTGMKTISSFF 346
BLAST of mRNA_H-elongata_contig20964.6056.1 vs. uniprot
Match: A0A4D9DAM5_9STRA (Ribonuclease H2 subunit B n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAM5_9STRA) HSP 1 Score: 150 bits (380), Expect = 1.420e-38 Identity = 115/322 (35.71%), Postives = 154/322 (47.83%), Query Frame = 1
Query: 103 SPLLGRVAEFPHPRTGQPAKFMLL-GDDLLELQASRPREPQELGSFFIDQTVQEDGSILMASRVDPLFLLLPVLSKH-ATKWCPLDQALGEAGCGDLRGLRH---LDSNKLCDVNDRLGPEELLIRINEDMVIEWLTVKVKRATERFIQVNRKMGAQGD---EGLARGFTI----------------IGTAGADGTAEAEAECPQQALEAVCEYLDEGWAGKLAAKFGTERARLFGGNTSAPKKRKGVWDES--MEADRYLELTHG-------------GGGKAKTSSEASAAPGAKKPMSQAQKKLTKVNKKGMKSITSFF 951
SP LG+V F HPR G P++++L L ELQ+ RP + GS+F++Q V DG + +AS VDP +LLPVL KH AT++ PL Q L G LR LD + +CDVND+LG + LL R+N + ++WL KV RAT+ + + Q + G A GF + G G T EA E + A+E V EYL E WA KL + G + G A K++ WD +E + LT G A+ S AQKKL K N KG+KSI+SFF
Sbjct: 36 SPQLGQVLAFTHPRGGYPSQYLLSPAGQLCELQSFRP-SGSKFGSWFVEQRVVSDGLLYVASPVDPKLILLPVLEKHGATRFSPLAQLLAAEADGAYLALRQCQGLDLHLVCDVNDQLGEDMLLYRLNAEKTMDWLAKKVARATQALVALEAAREEQNNGMGSGFAAGFVVEAGAIQGGSTGEDKRSTGAGGKVQTREATREEARLAVELVSEYLSEAWAVKLQHRCGFSEEEMRQG---AGAKKRSAWDGDGDLEQGTAMALTQGKRXXXXXXXXXXXXXXXXXXXXXXXXMRSAQGGQSLAQKKLAKTNLKGVKSISSFF 353
BLAST of mRNA_H-elongata_contig20964.6056.1 vs. uniprot
Match: A0A7S3YG07_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YG07_HETAK) HSP 1 Score: 123 bits (309), Expect = 5.210e-30 Identity = 82/231 (35.50%), Postives = 114/231 (49.35%), Query Frame = 1
Query: 166 MLLGDDLLELQASRPREPQELGSFFIDQTVQEDGSILMASRVDPLFLLLPVLSKHATKWCPLDQAL------GEAGCGDLRGLRHLDSNKLCDVNDRLGPEELLIRINEDMVIEWLTVKVKRATERFIQVNRKMGAQGDEGLARGFTIIG-----TAGADGTAEAEAECPQQALEA--VCEYLDEGWAGKLAAKFGTERAR-LFGGNTSAPKKRKGVWDESMEADRYLELT 816
ML D+ E+Q + + SFF+ Q VQ DG+ +ASR+DPLF++LPV SKH T++ PLDQ L GE + HL + +CDVNDRLGP+ + RINE V+ WL +K+K+ K Q RGF ++G+D P+ L A + EY+ E W K+ + A+ L + +AP KRK E DR L LT
Sbjct: 1 MLTVRDVYEIQLLKA---SKYSSFFVGQAVQSDGNFYVASRIDPLFIVLPVFSKHGTRYSPLDQILSAGSVAGEHNFLQIASCNHLKLSNICDVNDRLGPDSIFYRINEAKVVAWLKMKIKQVYCHLKSEKGKSHMQVGGSFVRGFEATSKSTGSSSGSDTKDSVITTDPEFKLAAKLIFEYICEEWQEKVLQSYSGLGAKDLEEASGAAPVKRKAWEAPDAERDRLLALT 228
BLAST of mRNA_H-elongata_contig20964.6056.1 vs. uniprot
Match: A0A2B4SSH9_STYPI (Ribonuclease H2 subunit B n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SSH9_STYPI) HSP 1 Score: 106 bits (264), Expect = 7.130e-23 Identity = 90/281 (32.03%), Postives = 142/281 (50.53%), Query Frame = 1
Query: 127 EFPHPRTGQPAKFMLL--GDDLLELQASRPREPQELGSFFIDQTVQEDGSILMASRVDPLFLLLPVLSKHATKWCPLDQALGEAGCGDLRGLRH-LDSNKLCDVNDRLGPEELLI-RINEDMVIEWLTVKVKRATERFIQVNRKMGAQGDEGLARGFTIIGTAGADGTAEAEAECPQQALEAVCEYLDEGWAGKLAAKFGTERARLFGGNTSAPKKRKGVWDESMEA--DRYLELTHGGGGKAKTSSEASAAPGAKKPMSQAQKKLTKVNKKGMKSITSFF 951
+ PHPRTG +F+L G+ + E+ + +E S+FI+ +VQ+DGS+ + + VDPLFL+LP L+K++ K+ LDQ L + + L L S+++ ++ D G ++L + R+N D WL KV++ T + ++ G +G + D T ++ + A V EYL W+ +L G P KR V DE EA D E + +KT S+ +A ++ AQK L+KV+KKGMKSI+SFF
Sbjct: 41 KIPHPRTGNNQQFLLTHSGEKIFEVL----KFTEEPRSWFIEDSVQKDGSLFVITPVDPLFLVLPYLTKYSQKFRTLDQLLLDDEHPPICRLTGCLSSDEILNICDVKGDDDLQVFRLNNDKTTAWLKAKVEQ-TANSLSLS---GVHVSKGSQSATFVRSRRHIDAT---RSDFVRYAFGLVSEYLSLRWSERLKESLGITDEAQLSSPEEPPTKRAKVTDEIPEATEDYSKEFSKL---NSKTESDKTATK-----LTAAQKSLSKVDKKGMKSISSFF 302
BLAST of mRNA_H-elongata_contig20964.6056.1 vs. uniprot
Match: UPI00106D86B5 (ribonuclease H2 subunit B-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D86B5) HSP 1 Score: 102 bits (254), Expect = 1.700e-21 Identity = 83/280 (29.64%), Postives = 138/280 (49.29%), Query Frame = 1
Query: 130 FPHPRTGQPAKFMLLGDDLLELQASRPREPQELGSFFIDQTVQEDGSILMASRVDPLFLLLPVLSKHATKWCPLDQALGEAGCGDLRGLRH-LDSNKLCDVNDRLGPEELLI-RINEDMVIEWLTVKVKRATERFIQVNR-KMGAQGDEGLARGFTIIGTAGADGTAEAEAECPQQALEAVCEYLDEGWAGKLAAKFGTERARLFGGNTSAPKKRKGVWDESMEA---DRYLELTHGGGGKAKTSSEASAAPGAKKPMSQAQKKLTKVNKKGMKSITSFF 951
PHP+TG +++L + + + E S+FID +V +DG++ +++D LF++LP L +TK+ L+ L E+ ++ L H + LC V D G E+L++ ++N D VI WL KV + ++ Q + GAQ T + ++ + G + + A V +Y+ + W+ KL A G + G + P +K DES+ A + Y + KAK + + + ++ AQK L KVN KGMKSI+SFF
Sbjct: 43 LPHPKTGHIQQYLLSKNKQEISEILKFNETPR--SWFIDNSVLQDGNLYFGTKIDALFMVLPSLKSTSTKFMTLEHILQESDNNNICELSHCITKEDLCLVTDMKGEEDLIVCKLNHDKVISWLEKKVYQTEDQLKQASICTSGAQSS-------TFVRSSKSRGNTQ---DYLGYAFGLVSDYISDYWSQKLKASLGIND-EISGSSEEEPACKKVKLDESLAAKPNEDYSKFF----AKAKATDQNTNVK-----LTAAQKSLAKVNTKGMKSISSFF 300
BLAST of mRNA_H-elongata_contig20964.6056.1 vs. uniprot
Match: A0A6P8HJ46_ACTTE (Ribonuclease H2 subunit B n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HJ46_ACTTE) HSP 1 Score: 101 bits (251), Expect = 4.340e-21 Identity = 96/306 (31.37%), Postives = 146/306 (47.71%), Query Frame = 1
Query: 67 PTQRQNGSSG--DSSPLLGRVAEFPHPRTGQPAKFMLLG--DDLLELQ--ASRPREPQELGSFFIDQTVQEDGSILMASRVDPLFLLLPVLSKHATKWCPLDQALGEAGCGDLRGLRH-LDSNKLCDVNDRLGPEEL-LIRINEDMVIEWLTVKVKRATERF--IQVNRKMGAQGDEGLARGFTIIGTAGADGTAEAEAECPQQALEAVCEYLDEGWAGKLAAKFGT-ERARLFGGNTSAPKKRKGVWDESMEADRYLELTHGGGGKAKTSSEASAAPGAKKPMSQAQKKLTKVNKKGMKSITSFF 951
P NGSS D P ++ HPRT + F++ D + E+ A PR S+FI+ +VQ+DGS+L+ + +DP+FL +P L+++ TK+ +DQ L + + L + S+ L +V D G ++L R+NED +I WL KV+ ++ ++N G+Q + T + + + VC+YLD WA KL A E + P KR + + +A LE K KT + S PG M+ AQK L+KVNK GMKS+ SFF
Sbjct: 23 PETALNGSSDGKDDEPTFVKLL---HPRTEKECMFLMSRNKDAVYEIMKFAEGPR------SWFIEDSVQKDGSLLVTTSIDPIFLCIPYLTRNKTKFRTIDQVLMDDDYPAVSSLSMCVSSDVLSNVCDCKGNDDLQAYRLNEDKLIAWLKTKVECVADKLESSKINVSKGSQSATFVRSKLQSNVT---------RDDYLRYSCGIVCQYLDSSWADKLQAALNLPEEKTVLSSPEEPPSKRTKL---NNDAGTVLEDYSKEYEKIKTKT-TSKTPG---KMTAAQKSLSKVNKNGMKSMASFF 303
BLAST of mRNA_H-elongata_contig20964.6056.1 vs. uniprot
Match: A0A4P9XKZ7_9FUNG (Ribonuclease H2 subunit B n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XKZ7_9FUNG) HSP 1 Score: 96.7 bits (239), Expect = 1.390e-19 Identity = 90/294 (30.61%), Postives = 131/294 (44.56%), Query Frame = 1
Query: 130 FPHPRTGQPAKFMLLGDDLLELQASRPREPQELGSFFIDQTVQEDGSILMASRVDPLFLLLPVLSK-------HATKWCPLDQALGEA-GCGDLRGLRHLDSN--KLCDVNDRLGPEELLIRINEDMVIEWLTVKVKRATERF------IQVNR----KMGAQGDEGLARGFTIIGTAGADGTAEAEAECPQQALEAVCEYLDEGWAGKLAAKFGTERARLFGGNTSAPKKRKGVWDESMEADRYLELTHGGGGKAKTSSEASAAPGAKKPMSQAQKKLTKVNKKGMKSITSFF 951
PHPRTG+ +F L G LLE+Q P S+ +D +VQ+DGSI+M + VDPLF+LLPVL A +C LD L G L ++ L+ ++CDV G + R+N+ VI WL KV R +F +Q+ R + G Q + GL + + A+ V +YL++ W +L + + + + K+RK V + A + G K KT A+AA KKP VN KGM S+ S+F
Sbjct: 21 LPHPRTGERIQFALDGPMLLEMQRMAP---DAAASWLVDDSVQQDGSIMMFTPVDPLFILLPVLETCRRRKGDSAGVFCALDDLLQTIPGLSVLARVKQLEQKLGRVCDVQAVPGHGNVY-RLNDSKVIGWLQRKVNRIVSKFAGFATLVQMERVYYAEPGVQDNVGLQQAIRVW-----------------LAITVVDDYLNQAWRDRLRTAYESTLEPVV----ALLKRRKRVAAAAQNASLAKAASTTGTRKGKT---AAAAARGKKP----------VNTKGMMSLRSYF 276
BLAST of mRNA_H-elongata_contig20964.6056.1 vs. uniprot
Match: A7RQZ3_NEMVE (Ribonuclease H2 subunit B n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RQZ3_NEMVE) HSP 1 Score: 95.9 bits (237), Expect = 4.630e-19 Identity = 85/291 (29.21%), Postives = 140/291 (48.11%), Query Frame = 1
Query: 97 DSSPLLGRVAEFPHPRTGQPAKFMLLGDDLLELQASRPREPQELGSFFIDQTVQEDGSILMASRVDPLFLLLPVLSKHATKWCPLDQALGEAGCGDLRGLRH-LDSNKLCDVNDRLGPEELLI-RINEDMVIEWLTVKVKRATERFI--QVNRKMGAQGDEGLARGFTIIGTAGADGTAEAEAECPQQALEAVCEYLDEGWAGKL--AAKFGTERARLFGGNTSAPKKRKGVWDESMEADRYLELTHGGGGKAKTSSEASAAPGAKKPMSQAQKKLTKVNKKGMKSITSFF 951
+S PL ++ PHPRTG+ + + D+ + ++ ++ E S+FID TV EDGS+++A+ +D +FL LP L K ++++ LDQ L ++ + L + + L V D G ++L + RINED + WL KV+ + +N G+Q + +D T E + + + +C+YL W KL A + + P KR + + S + Y + K K+ A PG M+ Q+ L+KV+K GMKSI+SFF
Sbjct: 38 ESPPLFAKI---PHPRTGKGVQLLFSSDEKSVCEVAKFKD--EPRSWFIDDTVHEDGSMVIATPIDSVFLCLPYLEKCSSQFRTLDQILIDSKFPSVGKLTNCITHESLTSVCDCKGDDDLHVYRINEDKTMAWLKTKVECVADYLATSDINVSKGSQS------ATFVRSRKHSDVTRE---DHLRYSSGMICDYLSLSWEEKLKKALNLPEKDKEKEVSDEEPPSKRVKLEEGSETVEDYSKEYE----KLKSKIPAGKTPG---KMTAGQRALSKVDKTGMKSISSFF 307 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20964.6056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20964.6056.1 >prot_H-elongata_contig20964.6056.1 ID=prot_H-elongata_contig20964.6056.1|Name=mRNA_H-elongata_contig20964.6056.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=319bp MASQRIILVHNEAFSLPSLRSRPTQRQNGSSGDSSPLLGRVAEFPHPRTGback to top mRNA from alignment at H-elongata_contig20964:3257..6386- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20964.6056.1 ID=mRNA_H-elongata_contig20964.6056.1|Name=mRNA_H-elongata_contig20964.6056.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3130bp|location=Sequence derived from alignment at H-elongata_contig20964:3257..6386- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20964:3257..6386- >mRNA_H-elongata_contig20964.6056.1 ID=mRNA_H-elongata_contig20964.6056.1|Name=mRNA_H-elongata_contig20964.6056.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1914bp|location=Sequence derived from alignment at H-elongata_contig20964:3257..6386- (Himanthalia elongata Himel1 dioecious)back to top |